Wall clock time and date at job start Tue Mar 31 2020 13:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.52998 * 109.46869 * 120.00164 * 2 1 3 5 5 C 1.50695 * 109.47243 * 175.00010 * 4 2 1 6 6 C 1.33814 * 124.52225 * 89.99752 * 5 4 2 7 7 C 1.37475 * 115.10326 * 180.02562 * 6 5 4 8 8 C 1.36652 * 113.29531 * 0.02562 * 7 6 5 9 9 C 1.46584 * 125.45799 * 179.97438 * 8 7 6 10 10 O 1.21702 * 119.99965 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99515 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99745 * 180.02562 * 11 9 8 13 13 H 1.09009 * 112.84691 * 336.19449 * 12 11 9 14 14 C 1.53782 * 113.61802 * 107.49888 * 12 11 9 15 15 C 1.53780 * 87.07601 * 89.11640 * 14 12 11 16 16 H 1.08998 * 113.69333 * 270.86944 * 15 14 12 17 17 N 1.46502 * 113.61026 * 139.98332 * 15 14 12 18 18 C 1.36945 * 120.00046 * 107.50235 * 17 15 14 19 19 H 1.08000 * 119.99956 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99781 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99591 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47356 * 90.00459 * 22 20 18 24 24 H 1.48499 * 109.47100 * 210.00607 * 22 20 18 25 25 H 1.48507 * 109.47415 * 330.00289 * 22 20 18 26 26 C 1.53777 * 87.08456 * 25.43483 * 15 14 12 27 27 S 1.70613 * 124.52374 * 270.02204 * 5 4 2 28 28 H 1.08992 * 109.47460 * 300.00224 * 1 2 3 29 29 H 1.09005 * 109.46723 * 60.00190 * 1 2 3 30 30 H 1.09003 * 109.47117 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47091 * 239.99961 * 2 1 3 32 32 H 1.08993 * 109.46687 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47083 * 299.99715 * 3 2 1 34 34 H 1.08997 * 109.46784 * 59.99894 * 3 2 1 35 35 H 1.09000 * 109.47644 * 54.99716 * 4 2 1 36 36 H 1.09002 * 109.46907 * 295.00309 * 4 2 1 37 37 H 1.07999 * 122.45084 * 0.02562 * 6 5 4 38 38 H 1.07998 * 123.35225 * 179.72591 * 7 6 5 39 39 H 0.97002 * 120.00690 * 0.02562 * 11 9 8 40 40 H 1.08996 * 113.61324 * 203.66804 * 14 12 11 41 41 H 1.08999 * 113.61212 * 334.57359 * 14 12 11 42 42 H 0.96998 * 120.00104 * 287.49859 * 17 15 14 43 43 H 0.96999 * 119.99893 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61079 * 220.01685 * 26 15 14 45 45 H 1.09003 * 113.61233 * 89.11381 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1889 6 6 4.3882 0.0833 1.6800 7 6 5.7214 -0.2112 1.5189 8 6 5.9390 -1.3981 0.8775 9 6 7.2532 -1.9683 0.5668 10 8 8.2656 -1.3734 0.8865 11 7 7.3401 -3.1513 -0.0729 12 6 8.6535 -3.7216 -0.3829 13 1 9.4397 -2.9684 -0.4377 14 6 9.0198 -4.9347 0.4884 15 6 8.3310 -5.8067 -0.5746 16 1 7.2656 -5.9536 -0.3974 17 7 9.0388 -7.0583 -0.8553 18 6 8.5251 -8.2490 -0.4152 19 1 7.5984 -8.2653 0.1391 20 6 9.1960 -9.4348 -0.6808 21 7 8.7020 -10.5792 -0.2583 22 14 10.7992 -9.4065 -1.6391 23 1 11.9373 -9.2637 -0.6959 24 1 10.9433 -10.6733 -2.4004 25 1 10.7917 -8.2599 -2.5829 26 6 8.6394 -4.6856 -1.5809 27 16 4.3900 -2.1317 0.4850 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6054 -1.7198 1.2952 36 1 1.7516 -0.1584 2.1369 37 1 4.0489 0.9853 2.1673 38 1 6.5174 0.4337 1.8606 39 1 6.5332 -3.6253 -0.3280 40 1 10.0930 -5.1078 0.5668 41 1 8.5164 -4.9457 1.4552 42 1 9.8713 -7.0436 -1.3530 43 1 9.1707 -11.4079 -0.4441 44 1 7.8290 -4.4955 -2.2847 45 1 9.6087 -4.7908 -2.0683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020246378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:30 Heat of formation + Delta-G solvation = 12.462852 kcal Electronic energy + Delta-G solvation = -23894.655236 eV Core-core repulsion = 20425.146854 eV Total energy + Delta-G solvation = -3469.508382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.10332 -38.81866 -37.92146 -36.15463 -34.17791 -32.69466 -31.01466 -30.38243 -27.68841 -27.26898 -25.26173 -24.78464 -23.84314 -22.25398 -21.55444 -20.64165 -19.55011 -19.09354 -18.16866 -17.49359 -16.34642 -16.02417 -15.38524 -15.16545 -15.10414 -14.88150 -14.67099 -14.37313 -14.04437 -13.55279 -13.26858 -13.05399 -12.90443 -12.65967 -12.64401 -12.46166 -12.21471 -12.19279 -12.02926 -12.01031 -11.44737 -11.27945 -11.19717 -11.03661 -11.01495 -10.89554 -10.43942 -10.22869 -10.07897 -9.91622 -9.59578 -9.06041 -8.93260 -8.83564 -8.75798 -7.30763 -5.81241 -3.17235 0.28879 1.21212 1.64253 2.17254 3.08198 3.14816 3.35151 3.38198 3.43385 4.22479 4.40503 4.48401 4.55457 4.69651 4.77054 4.90748 5.03798 5.07139 5.07470 5.18158 5.23818 5.24364 5.28133 5.38291 5.39260 5.46135 5.53812 5.67436 5.70891 5.73146 5.74268 5.84341 5.88884 5.91109 5.97246 6.09237 6.13028 6.16205 6.38088 6.49880 6.55082 6.92065 7.45633 7.94358 8.13407 8.38227 9.15665 9.88256 10.07820 11.36862 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.002402 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.992820 B =11652.738367 C =12548.520621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.049 4.049 5 C -0.189 4.189 6 C -0.153 4.153 7 C -0.054 4.054 8 C -0.266 4.266 9 C 0.592 3.408 10 O -0.533 6.533 11 N -0.703 5.703 12 C 0.117 3.883 13 H 0.100 0.900 14 C -0.176 4.176 15 C 0.172 3.828 16 H 0.082 0.918 17 N -0.736 5.736 18 C -0.250 4.250 19 H 0.091 0.909 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.163 4.163 27 S 0.205 5.795 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.398 0.602 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.161 24.975 0.702 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.088 4.088 5 C -0.309 4.309 6 C -0.184 4.184 7 C -0.087 4.087 8 C -0.386 4.386 9 C 0.378 3.622 10 O -0.411 6.411 11 N -0.353 5.353 12 C 0.012 3.988 13 H 0.118 0.882 14 C -0.218 4.218 15 C 0.060 3.940 16 H 0.100 0.900 17 N -0.376 5.376 18 C -0.379 4.379 19 H 0.109 0.891 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.203 4.203 27 S 0.474 5.526 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.233 0.767 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.003 23.789 0.287 28.126 hybrid contribution 1.197 0.996 0.044 1.558 sum -13.806 24.785 0.331 28.373 Atomic orbital electron populations 1.21848 0.94636 1.01999 1.02046 1.21140 0.95792 0.96774 0.97488 1.21913 1.01792 0.95436 1.01691 1.20327 0.87244 1.01826 0.99381 1.24221 1.01015 0.99948 1.05672 1.19935 0.91850 1.01483 1.05083 1.20736 0.97114 0.94815 0.96036 1.24616 0.96873 1.02877 1.14281 1.16931 0.86985 0.80688 0.77623 1.90817 1.36016 1.61046 1.53262 1.45578 1.09419 1.21141 1.59136 1.21831 0.84439 0.94930 0.97603 0.88214 1.24285 1.02255 0.95639 0.99625 1.21613 0.95987 0.84307 0.92049 0.90036 1.42745 1.26056 1.02603 1.66153 1.19126 1.06665 0.82952 1.29197 0.89148 1.24702 0.98595 0.95230 1.00558 1.69702 1.40208 0.97232 1.50785 0.86545 0.84874 0.76875 0.80195 1.21003 1.21691 1.20276 1.23896 1.02756 0.96777 0.96829 1.83123 0.94738 1.20562 1.54215 0.92520 0.92382 0.92471 0.90885 0.92029 0.92699 0.92669 0.90415 0.89726 0.83982 0.83075 0.76729 0.89467 0.91852 0.80361 0.92996 0.91346 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.09 -0.53 2.91 -90.62 -0.26 -0.80 16 3 C -0.15 -0.86 8.87 37.16 0.33 -0.53 16 4 C -0.05 -0.30 5.12 -27.89 -0.14 -0.44 16 5 C -0.19 -1.53 5.05 -35.86 -0.18 -1.71 16 6 C -0.15 -1.28 8.50 -41.41 -0.35 -1.64 16 7 C -0.05 -0.57 10.01 -40.43 -0.40 -0.97 16 8 C -0.27 -3.15 6.45 -36.79 -0.24 -3.38 16 9 C 0.59 8.58 7.78 -12.90 -0.10 8.48 16 10 O -0.53 -9.44 16.44 5.19 0.09 -9.35 16 11 N -0.70 -9.45 5.26 -54.35 -0.29 -9.74 16 12 C 0.12 1.72 4.32 -67.12 -0.29 1.43 16 13 H 0.10 1.52 7.46 -51.92 -0.39 1.13 16 14 C -0.18 -2.98 7.68 -25.92 -0.20 -3.18 16 15 C 0.17 3.16 4.36 -67.12 -0.29 2.87 16 16 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 17 N -0.74 -16.99 5.21 -52.64 -0.27 -17.26 16 18 C -0.25 -6.93 10.45 -15.06 -0.16 -7.08 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 21 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 22 Si 0.88 21.88 27.73 -169.99 -4.71 17.16 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 26 C -0.16 -2.42 7.58 -25.92 -0.20 -2.61 16 27 S 0.21 1.89 22.10 -107.50 -2.38 -0.49 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.41 6.38 -51.93 -0.33 0.08 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.40 4.66 7.81 -40.82 -0.32 4.34 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.36 8.23 5.78 -40.82 -0.24 7.99 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.33 8.12 -51.93 -0.42 0.91 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -32.72 380.92 -10.49 -43.21 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.20 Total: 8.84 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.24 Total: -9.87 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.22 Total: -55.24 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.72 -10.49 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020246378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.674 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds