Wall clock time and date at job start Tue Mar 31 2020 13:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.52998 * 109.46869 * 120.00164 * 2 1 3 5 5 C 1.50695 * 109.47243 * 175.00010 * 4 2 1 6 6 C 1.33814 * 124.52225 * 89.99752 * 5 4 2 7 7 C 1.37475 * 115.10326 * 180.02562 * 6 5 4 8 8 C 1.36652 * 113.29531 * 0.02562 * 7 6 5 9 9 C 1.46584 * 125.45799 * 179.97438 * 8 7 6 10 10 O 1.21702 * 119.99965 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99515 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99745 * 180.02562 * 11 9 8 13 13 H 1.09009 * 112.84691 * 336.19449 * 12 11 9 14 14 C 1.53782 * 113.61802 * 107.49888 * 12 11 9 15 15 C 1.53780 * 87.07601 * 89.11640 * 14 12 11 16 16 H 1.08998 * 113.69333 * 270.86944 * 15 14 12 17 17 N 1.46502 * 113.61026 * 139.98332 * 15 14 12 18 18 C 1.36945 * 120.00046 * 107.50235 * 17 15 14 19 19 H 1.08000 * 119.99956 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99781 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99591 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47356 * 90.00459 * 22 20 18 24 24 H 1.48499 * 109.47100 * 210.00607 * 22 20 18 25 25 H 1.48507 * 109.47415 * 330.00289 * 22 20 18 26 26 C 1.53777 * 87.08456 * 25.43483 * 15 14 12 27 27 S 1.70613 * 124.52374 * 270.02204 * 5 4 2 28 28 H 1.08992 * 109.47460 * 300.00224 * 1 2 3 29 29 H 1.09005 * 109.46723 * 60.00190 * 1 2 3 30 30 H 1.09003 * 109.47117 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47091 * 239.99961 * 2 1 3 32 32 H 1.08993 * 109.46687 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47083 * 299.99715 * 3 2 1 34 34 H 1.08997 * 109.46784 * 59.99894 * 3 2 1 35 35 H 1.09000 * 109.47644 * 54.99716 * 4 2 1 36 36 H 1.09002 * 109.46907 * 295.00309 * 4 2 1 37 37 H 1.07999 * 122.45084 * 0.02562 * 6 5 4 38 38 H 1.07998 * 123.35225 * 179.72591 * 7 6 5 39 39 H 0.97002 * 120.00690 * 0.02562 * 11 9 8 40 40 H 1.08996 * 113.61324 * 203.66804 * 14 12 11 41 41 H 1.08999 * 113.61212 * 334.57359 * 14 12 11 42 42 H 0.96998 * 120.00104 * 287.49859 * 17 15 14 43 43 H 0.96999 * 119.99893 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.61079 * 220.01685 * 26 15 14 45 45 H 1.09003 * 113.61233 * 89.11381 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1889 6 6 4.3882 0.0833 1.6800 7 6 5.7214 -0.2112 1.5189 8 6 5.9390 -1.3981 0.8775 9 6 7.2532 -1.9683 0.5668 10 8 8.2656 -1.3734 0.8865 11 7 7.3401 -3.1513 -0.0729 12 6 8.6535 -3.7216 -0.3829 13 1 9.4397 -2.9684 -0.4377 14 6 9.0198 -4.9347 0.4884 15 6 8.3310 -5.8067 -0.5746 16 1 7.2656 -5.9536 -0.3974 17 7 9.0388 -7.0583 -0.8553 18 6 8.5251 -8.2490 -0.4152 19 1 7.5984 -8.2653 0.1391 20 6 9.1960 -9.4348 -0.6808 21 7 8.7020 -10.5792 -0.2583 22 14 10.7992 -9.4065 -1.6391 23 1 11.9373 -9.2637 -0.6959 24 1 10.9433 -10.6733 -2.4004 25 1 10.7917 -8.2599 -2.5829 26 6 8.6394 -4.6856 -1.5809 27 16 4.3900 -2.1317 0.4850 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6054 -1.7198 1.2952 36 1 1.7516 -0.1584 2.1369 37 1 4.0489 0.9853 2.1673 38 1 6.5174 0.4337 1.8606 39 1 6.5332 -3.6253 -0.3280 40 1 10.0930 -5.1078 0.5668 41 1 8.5164 -4.9457 1.4552 42 1 9.8713 -7.0436 -1.3530 43 1 9.1707 -11.4079 -0.4441 44 1 7.8290 -4.4955 -2.2847 45 1 9.6087 -4.7908 -2.0683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020246378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:29 Heat of formation + Delta-G solvation = -7.472047 kcal Electronic energy + Delta-G solvation = -23895.519678 eV Core-core repulsion = 20425.146854 eV Total energy + Delta-G solvation = -3470.372824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29046 -39.75197 -38.97320 -36.75515 -35.88248 -34.24607 -32.53510 -31.49430 -28.28877 -27.87100 -26.60245 -26.34601 -24.72636 -23.72994 -22.73093 -21.11680 -20.77768 -20.29304 -19.37662 -19.05438 -17.31520 -17.13530 -16.55938 -16.33066 -16.16979 -15.94615 -15.73384 -15.28516 -15.13024 -14.82967 -14.44788 -14.17230 -13.99634 -13.80246 -13.67547 -13.45859 -13.35579 -13.11409 -12.97358 -12.89750 -12.59392 -12.52526 -12.07343 -12.01999 -11.89280 -11.84337 -11.76201 -11.72377 -11.52812 -11.30820 -11.21821 -10.90371 -10.21070 -9.63212 -9.53223 -9.28968 -8.02500 -5.36002 -0.52336 0.44788 0.90033 1.37155 1.38898 1.42400 1.49412 2.00556 2.12945 2.48856 3.27184 3.57359 3.65329 3.68137 3.73775 3.80929 3.95849 4.04951 4.20182 4.22658 4.23446 4.38319 4.51265 4.63610 4.70559 4.74374 4.85263 4.85480 4.86603 4.94568 5.01948 5.05532 5.07802 5.11169 5.13851 5.16461 5.19372 5.31141 5.40860 5.47450 5.49534 5.57793 5.76929 6.22247 6.37342 7.03633 7.07528 7.83828 8.03093 9.18838 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.002402 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.992820 B =11652.738367 C =12548.520621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.049 4.049 5 C -0.175 4.175 6 C -0.157 4.157 7 C -0.050 4.050 8 C -0.302 4.302 9 C 0.591 3.409 10 O -0.573 6.573 11 N -0.698 5.698 12 C 0.131 3.869 13 H 0.100 0.900 14 C -0.174 4.174 15 C 0.155 3.845 16 H 0.078 0.922 17 N -0.740 5.740 18 C -0.234 4.234 19 H 0.058 0.942 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.955 3.045 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.247 1.247 26 C -0.142 4.142 27 S 0.220 5.780 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.165 0.835 38 H 0.149 0.851 39 H 0.407 0.593 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.368 0.632 43 H 0.257 0.743 44 H 0.089 0.911 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.924 27.144 -0.180 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.089 4.089 5 C -0.295 4.295 6 C -0.187 4.187 7 C -0.084 4.084 8 C -0.422 4.422 9 C 0.379 3.621 10 O -0.454 6.454 11 N -0.348 5.348 12 C 0.025 3.975 13 H 0.118 0.882 14 C -0.216 4.216 15 C 0.045 3.955 16 H 0.096 0.904 17 N -0.381 5.381 18 C -0.365 4.365 19 H 0.076 0.924 20 C -0.257 4.257 21 N -0.634 5.634 22 Si 0.782 3.218 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.171 1.171 26 C -0.181 4.181 27 S 0.489 5.511 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.183 0.817 38 H 0.167 0.833 39 H 0.243 0.757 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.202 0.798 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.795 26.018 -0.612 30.444 hybrid contribution 1.253 0.412 0.410 1.382 sum -14.542 26.431 -0.202 30.168 Atomic orbital electron populations 1.21831 0.93761 1.02260 1.02492 1.21120 0.96475 0.96606 0.96818 1.21911 1.01101 0.95523 1.02266 1.20455 0.85561 1.02597 1.00237 1.24572 1.02118 0.98943 1.03905 1.20087 0.90810 1.02423 1.05331 1.20932 0.98176 0.94240 0.95076 1.24440 0.96806 1.04164 1.16819 1.17284 0.87608 0.80421 0.76762 1.90784 1.37611 1.62088 1.54959 1.45517 1.09347 1.21029 1.58911 1.21621 0.85121 0.94162 0.96612 0.88152 1.24190 1.01837 0.96545 0.98996 1.21932 0.95619 0.83473 0.94450 0.90409 1.42726 1.26577 1.02512 1.66298 1.19101 1.05153 0.84820 1.27420 0.92412 1.25538 1.02771 0.94805 1.02611 1.69886 1.42294 0.97999 1.53234 0.85408 0.79884 0.77450 0.79032 1.20770 1.22383 1.17150 1.23737 1.04068 0.93887 0.96429 1.83038 0.93258 1.20733 1.54050 0.91799 0.92255 0.92325 0.91780 0.93037 0.92592 0.91722 0.89791 0.88190 0.81717 0.83333 0.75682 0.89676 0.92930 0.79828 0.93383 0.89289 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 71.98 0.66 -0.40 16 2 C -0.09 -0.84 2.91 -10.79 -0.03 -0.87 16 3 C -0.15 -1.39 8.87 71.98 0.64 -0.75 16 4 C -0.05 -0.47 5.12 29.85 0.15 -0.32 16 5 C -0.18 -2.47 5.05 24.68 0.12 -2.35 16 6 C -0.16 -2.33 8.50 21.08 0.18 -2.15 16 7 C -0.05 -1.01 10.01 21.72 0.22 -0.79 16 8 C -0.30 -6.97 6.45 24.08 0.16 -6.81 16 9 C 0.59 17.00 7.78 86.42 0.67 17.68 16 10 O -0.57 -20.42 16.44 -4.36 -0.07 -20.49 16 11 N -0.70 -18.18 5.26 -444.07 -2.34 -20.51 16 12 C 0.13 3.67 4.32 45.52 0.20 3.86 16 13 H 0.10 2.91 7.46 -2.38 -0.02 2.89 16 14 C -0.17 -5.78 7.68 31.12 0.24 -5.54 16 15 C 0.15 5.52 4.36 45.52 0.20 5.72 16 16 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 17 N -0.74 -33.44 5.21 -320.44 -1.67 -35.10 16 18 C -0.23 -13.13 10.45 84.03 0.88 -12.25 16 19 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 21 N -0.98 -62.89 13.97 21.65 0.30 -62.58 16 22 Si 0.96 45.02 27.73 68.60 1.90 46.92 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.25 -10.32 6.52 99.48 0.65 -9.68 16 26 C -0.14 -3.86 7.58 31.12 0.24 -3.62 16 27 S 0.22 3.77 22.10 -56.49 -1.25 2.52 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.58 6.38 -2.39 -0.02 0.57 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.41 9.09 7.81 -92.71 -0.72 8.37 16 40 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 42 H 0.37 15.84 5.78 -92.71 -0.54 15.30 16 43 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.10 2.64 8.12 -2.39 -0.02 2.62 16 Total: -1.00 -71.78 380.92 1.54 -70.24 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.33 Total: 31.00 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.99 Total: -11.99 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -3.70 Total: -118.20 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.07 Total: -20.49 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.25 Total: 2.52 kcal Total: -71.78 1.54 -70.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020246378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.769 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds