Wall clock time and date at job start Tue Mar 31 2020 13:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 C 1.50703 * 109.47115 * 180.02562 * 3 2 1 5 5 C 1.37475 * 122.44570 * 265.02784 * 4 3 2 6 6 C 1.36652 * 113.29531 * 179.97438 * 5 4 3 7 7 C 1.46584 * 125.45799 * 179.97438 * 6 5 4 8 8 O 1.21702 * 119.99965 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99515 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99745 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84850 * 25.32546 * 10 9 7 12 12 C 1.53782 * 113.61877 * 156.52647 * 10 9 7 13 13 C 1.53787 * 87.08024 * 139.97883 * 12 10 9 14 14 H 1.08995 * 113.61130 * 220.02121 * 13 12 10 15 15 N 1.46499 * 113.60928 * 89.20459 * 13 12 10 16 16 C 1.36940 * 119.99729 * 155.00245 * 15 13 12 17 17 H 1.08000 * 120.00052 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99992 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00097 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47075 * 90.00035 * 20 18 16 22 22 H 1.48497 * 109.47306 * 210.00047 * 20 18 16 23 23 H 1.48506 * 109.47104 * 329.99961 * 20 18 16 24 24 C 1.53780 * 113.61441 * 254.13573 * 10 9 7 25 25 S 1.75831 * 109.08102 * 359.97438 * 6 5 4 26 26 C 1.33814 * 122.45104 * 85.00172 * 4 3 2 27 27 C 1.50695 * 124.52225 * 0.04506 * 26 4 3 28 28 H 1.08993 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47183 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.99647 * 1 2 3 31 31 H 1.09003 * 109.47180 * 240.00729 * 2 1 3 32 32 H 1.08997 * 109.47242 * 119.99899 * 2 1 3 33 33 H 1.08999 * 109.47258 * 60.00391 * 3 2 1 34 34 H 1.09002 * 109.47446 * 300.00164 * 3 2 1 35 35 H 1.07998 * 123.35225 * 359.70157 * 5 4 3 36 36 H 0.97002 * 120.00690 * 0.02562 * 9 7 6 37 37 H 1.08991 * 113.61511 * 254.52952 * 12 10 9 38 38 H 1.09004 * 113.60747 * 25.35080 * 12 10 9 39 39 H 0.97003 * 119.99949 * 334.99347 * 15 13 12 40 40 H 0.96996 * 120.00259 * 180.02562 * 19 18 16 41 41 H 1.09001 * 113.61242 * 334.57073 * 24 10 9 42 42 H 1.09011 * 113.61555 * 105.46611 * 24 10 9 43 43 H 1.08998 * 109.47730 * 89.99989 * 27 26 4 44 44 H 1.09000 * 109.47041 * 210.00416 * 27 26 4 45 45 H 1.09002 * 109.47412 * 329.99763 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2850 1.5429 1.1549 6 6 5.6341 1.5236 0.9378 7 6 6.6639 1.6143 1.9770 8 8 6.3414 1.7162 3.1461 9 7 7.9679 1.5848 1.6377 10 6 8.9972 1.6749 2.6763 11 1 8.6485 1.3280 3.6491 12 6 10.3498 1.0751 2.2571 13 6 11.0104 2.2638 2.9750 14 1 11.8698 2.6721 2.4433 15 7 11.2842 2.0146 4.3925 16 6 12.2808 2.7052 5.0290 17 1 12.8652 3.4332 4.4860 18 6 12.5399 2.4694 6.3722 19 7 11.8280 1.5819 7.0339 20 14 13.8998 3.4109 7.2403 21 1 13.3441 4.6590 7.8223 22 1 14.4698 2.5706 8.3238 23 1 14.9665 3.7517 6.2650 24 6 9.7042 3.0396 2.7263 25 16 5.9366 1.3725 -0.7877 26 6 4.2645 1.3444 -1.1258 27 6 3.6745 1.2247 -2.5073 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.8427 1.6328 2.1360 36 1 8.2250 1.5039 0.7059 37 1 10.5627 0.1119 2.7205 38 1 10.5099 1.0707 1.1788 39 1 10.7594 1.3605 4.8801 40 1 12.0088 1.4174 7.9725 41 1 9.6881 3.5747 1.7768 42 1 9.3967 3.6602 3.5682 43 1 3.5328 2.2196 -2.9294 44 1 4.3508 0.6532 -3.1430 45 1 2.7130 0.7146 -2.4488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021025078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:12 Heat of formation + Delta-G solvation = 6.158673 kcal Electronic energy + Delta-G solvation = -23842.171511 eV Core-core repulsion = 20372.389760 eV Total energy + Delta-G solvation = -3469.781751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95475 -39.03681 -37.80666 -34.51439 -34.04184 -32.74409 -32.13928 -29.76921 -28.80738 -26.35625 -25.10838 -24.55902 -23.61542 -22.64582 -21.86997 -20.54365 -19.22890 -18.47722 -17.99447 -17.32413 -16.53794 -15.86461 -15.14314 -15.06203 -14.98007 -14.83526 -14.37462 -13.97929 -13.92476 -13.74230 -13.39194 -13.10455 -13.01529 -12.72933 -12.47916 -12.31122 -12.14481 -12.02917 -11.95843 -11.74502 -11.57234 -11.44566 -11.07677 -10.90821 -10.86405 -10.79216 -10.26377 -10.15481 -10.00728 -9.72948 -9.65155 -8.92872 -8.88409 -8.73038 -8.57662 -6.99621 -5.77983 -3.08153 0.33150 1.23925 1.65040 2.15570 3.25220 3.26786 3.44236 3.48928 3.50898 4.42439 4.52767 4.57177 4.64349 4.76819 4.80725 4.87247 5.07286 5.09971 5.14563 5.23838 5.25216 5.28873 5.40162 5.44926 5.47280 5.48277 5.53063 5.64957 5.73673 5.77733 5.88233 5.96314 5.99747 6.09324 6.11084 6.19664 6.23129 6.37004 6.61676 6.72665 6.78546 7.03265 7.60247 7.70532 8.28449 8.40108 9.50843 10.07054 10.41120 11.44162 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.002164 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.963078 B =12934.815505 C =13592.359006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.059 4.059 4 C -0.118 4.118 5 C -0.050 4.050 6 C -0.258 4.258 7 C 0.585 3.415 8 O -0.526 6.526 9 N -0.713 5.713 10 C 0.126 3.874 11 H 0.115 0.885 12 C -0.164 4.164 13 C 0.173 3.827 14 H 0.069 0.931 15 N -0.705 5.705 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.184 4.184 25 S 0.191 5.809 26 C -0.199 4.199 27 C -0.085 4.085 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.393 0.607 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.088 -2.611 -22.805 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.098 4.098 4 C -0.131 4.131 5 C -0.083 4.083 6 C -0.378 4.378 7 C 0.370 3.630 8 O -0.403 6.403 9 N -0.362 5.362 10 C 0.022 3.978 11 H 0.133 0.867 12 C -0.204 4.204 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.343 5.343 16 C -0.376 4.376 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.227 4.227 25 S 0.460 5.540 26 C -0.318 4.318 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.170 0.830 36 H 0.226 0.774 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.775 -2.533 -22.752 29.607 hybrid contribution -0.731 0.355 1.098 1.366 sum -19.506 -2.178 -21.655 29.226 Atomic orbital electron populations 1.21785 0.95619 1.01747 1.01863 1.21520 0.95620 0.96147 1.02508 1.20338 0.89095 0.97435 1.02974 1.18638 0.97419 1.05705 0.91312 1.20633 0.91020 0.96819 0.99842 1.24642 0.98166 1.18049 0.96945 1.17009 0.81953 0.76761 0.87280 1.90862 1.81586 1.49552 1.18347 1.46024 1.05404 1.74261 1.10546 1.22712 0.84831 0.98375 0.91843 0.86691 1.23904 0.95113 1.00968 1.00416 1.20933 0.93625 0.92524 0.86987 0.91271 1.42201 1.40413 1.47486 1.04248 1.19269 1.09214 1.16410 0.92741 0.90906 1.24791 0.99781 0.99457 0.96782 1.69667 1.42272 1.36361 1.09436 0.86156 0.81443 0.79040 0.79312 1.21652 1.21752 1.20695 1.24362 1.00458 0.96606 1.01234 1.82897 1.03512 1.68385 0.99188 1.23970 0.98301 1.09262 1.00301 1.20396 1.01154 1.02829 0.89964 0.92663 0.92568 0.92780 0.91939 0.91649 0.90758 0.90968 0.83040 0.77364 0.90699 0.90303 0.77956 0.93364 0.91240 0.90902 0.90515 0.91165 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.79 5.85 -26.73 -0.16 -0.95 16 3 C -0.06 -0.42 4.82 -27.88 -0.13 -0.56 16 4 C -0.12 -1.11 5.04 -106.45 -0.54 -1.65 16 5 C -0.05 -0.60 9.78 -40.43 -0.40 -0.99 16 6 C -0.26 -3.30 6.45 -36.79 -0.24 -3.54 16 7 C 0.58 9.42 7.78 -12.90 -0.10 9.32 16 8 O -0.53 -10.68 16.46 5.19 0.09 -10.60 16 9 N -0.71 -10.31 5.36 -54.35 -0.29 -10.60 16 10 C 0.13 2.16 4.09 -67.12 -0.27 1.88 16 11 H 0.12 2.35 7.50 -51.93 -0.39 1.96 16 12 C -0.16 -2.64 7.58 -25.92 -0.20 -2.83 16 13 C 0.17 3.40 4.57 -67.03 -0.31 3.09 16 14 H 0.07 1.33 8.10 -51.93 -0.42 0.90 16 15 N -0.71 -17.78 5.31 -52.55 -0.28 -18.06 16 16 C -0.25 -6.83 9.97 -15.06 -0.15 -6.98 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.18 -3.32 7.69 -25.83 -0.20 -3.52 16 25 S 0.19 1.76 22.10 -107.50 -2.38 -0.61 16 26 C -0.20 -1.70 6.28 -35.86 -0.23 -1.92 16 27 C -0.09 -0.48 9.71 36.00 0.35 -0.13 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.40 7.24 -51.93 -0.38 0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.07 0.43 7.46 -51.93 -0.39 0.05 16 35 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.39 4.49 7.82 -40.82 -0.32 4.17 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 39 H 0.39 10.43 7.90 -40.82 -0.32 10.10 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.52 8.14 -51.92 -0.42 1.09 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.38 6.40 -51.93 -0.33 0.05 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -32.82 384.28 -10.82 -43.64 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.16 Total: 10.31 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.29 Total: -9.68 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.15 Total: -56.34 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.38 Total: -0.61 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.82 -10.82 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021025078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.796 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds