Wall clock time and date at job start Tue Mar 31 2020 13:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 C 1.50703 * 109.47115 * 180.02562 * 3 2 1 5 5 C 1.37475 * 122.44570 * 265.02784 * 4 3 2 6 6 C 1.36652 * 113.29531 * 179.97438 * 5 4 3 7 7 C 1.46584 * 125.45799 * 179.97438 * 6 5 4 8 8 O 1.21702 * 119.99965 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99515 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99745 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84850 * 25.32546 * 10 9 7 12 12 C 1.53782 * 113.61877 * 156.52647 * 10 9 7 13 13 C 1.53787 * 87.08024 * 139.97883 * 12 10 9 14 14 H 1.08995 * 113.61130 * 220.02121 * 13 12 10 15 15 N 1.46499 * 113.60928 * 89.20459 * 13 12 10 16 16 C 1.36940 * 119.99729 * 155.00245 * 15 13 12 17 17 H 1.08000 * 120.00052 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99992 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00097 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47075 * 90.00035 * 20 18 16 22 22 H 1.48497 * 109.47306 * 210.00047 * 20 18 16 23 23 H 1.48506 * 109.47104 * 329.99961 * 20 18 16 24 24 C 1.53780 * 113.61441 * 254.13573 * 10 9 7 25 25 S 1.75831 * 109.08102 * 359.97438 * 6 5 4 26 26 C 1.33814 * 122.45104 * 85.00172 * 4 3 2 27 27 C 1.50695 * 124.52225 * 0.04506 * 26 4 3 28 28 H 1.08993 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47183 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.99647 * 1 2 3 31 31 H 1.09003 * 109.47180 * 240.00729 * 2 1 3 32 32 H 1.08997 * 109.47242 * 119.99899 * 2 1 3 33 33 H 1.08999 * 109.47258 * 60.00391 * 3 2 1 34 34 H 1.09002 * 109.47446 * 300.00164 * 3 2 1 35 35 H 1.07998 * 123.35225 * 359.70157 * 5 4 3 36 36 H 0.97002 * 120.00690 * 0.02562 * 9 7 6 37 37 H 1.08991 * 113.61511 * 254.52952 * 12 10 9 38 38 H 1.09004 * 113.60747 * 25.35080 * 12 10 9 39 39 H 0.97003 * 119.99949 * 334.99347 * 15 13 12 40 40 H 0.96996 * 120.00259 * 180.02562 * 19 18 16 41 41 H 1.09001 * 113.61242 * 334.57073 * 24 10 9 42 42 H 1.09011 * 113.61555 * 105.46611 * 24 10 9 43 43 H 1.08998 * 109.47730 * 89.99989 * 27 26 4 44 44 H 1.09000 * 109.47041 * 210.00416 * 27 26 4 45 45 H 1.09002 * 109.47412 * 329.99763 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2850 1.5429 1.1549 6 6 5.6341 1.5236 0.9378 7 6 6.6639 1.6143 1.9770 8 8 6.3414 1.7162 3.1461 9 7 7.9679 1.5848 1.6377 10 6 8.9972 1.6749 2.6763 11 1 8.6485 1.3280 3.6491 12 6 10.3498 1.0751 2.2571 13 6 11.0104 2.2638 2.9750 14 1 11.8698 2.6721 2.4433 15 7 11.2842 2.0146 4.3925 16 6 12.2808 2.7052 5.0290 17 1 12.8652 3.4332 4.4860 18 6 12.5399 2.4694 6.3722 19 7 11.8280 1.5819 7.0339 20 14 13.8998 3.4109 7.2403 21 1 13.3441 4.6590 7.8223 22 1 14.4698 2.5706 8.3238 23 1 14.9665 3.7517 6.2650 24 6 9.7042 3.0396 2.7263 25 16 5.9366 1.3725 -0.7877 26 6 4.2645 1.3444 -1.1258 27 6 3.6745 1.2247 -2.5073 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.8427 1.6328 2.1360 36 1 8.2250 1.5039 0.7059 37 1 10.5627 0.1119 2.7205 38 1 10.5099 1.0707 1.1788 39 1 10.7594 1.3605 4.8801 40 1 12.0088 1.4174 7.9725 41 1 9.6881 3.5747 1.7768 42 1 9.3967 3.6602 3.5682 43 1 3.5328 2.2196 -2.9294 44 1 4.3508 0.6532 -3.1430 45 1 2.7130 0.7146 -2.4488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021025078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:11 Heat of formation + Delta-G solvation = -14.354599 kcal Electronic energy + Delta-G solvation = -23843.061033 eV Core-core repulsion = 20372.389760 eV Total energy + Delta-G solvation = -3470.671274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22757 -39.98848 -39.14162 -35.78206 -35.12634 -34.36674 -32.90377 -31.68699 -29.47593 -27.25764 -26.55862 -26.07046 -24.94685 -23.82885 -22.66998 -21.63142 -20.44937 -19.52655 -19.41235 -18.93131 -17.60267 -17.09609 -16.65877 -16.25788 -16.05192 -15.74701 -15.69288 -15.18440 -15.07277 -14.77543 -14.41708 -14.33151 -13.89797 -13.69649 -13.66974 -13.36085 -13.32845 -12.98781 -12.84642 -12.80675 -12.71547 -12.63762 -12.35172 -12.17626 -11.99350 -11.85360 -11.75497 -11.69919 -11.47138 -11.40103 -11.13357 -10.88904 -10.16180 -9.61748 -9.34755 -9.04654 -7.96360 -5.26529 -0.54571 0.43914 0.86262 1.29355 1.46691 1.49293 1.57578 2.06535 2.09488 2.54750 3.35128 3.58013 3.71212 3.80413 3.82253 3.86382 4.02888 4.09722 4.26396 4.26599 4.29707 4.31073 4.53386 4.63856 4.72210 4.74631 4.76632 4.78979 4.88192 4.93999 4.98251 5.02459 5.10335 5.11618 5.18091 5.19512 5.23018 5.25712 5.41065 5.48834 5.49672 5.54429 5.61788 6.25621 6.42098 7.08812 7.30309 8.06049 8.27606 9.27150 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.002164 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.963078 B =12934.815505 C =13592.359006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.056 4.056 4 C -0.133 4.133 5 C -0.052 4.052 6 C -0.302 4.302 7 C 0.581 3.419 8 O -0.584 6.584 9 N -0.697 5.697 10 C 0.129 3.871 11 H 0.072 0.928 12 C -0.137 4.137 13 C 0.154 3.846 14 H 0.083 0.917 15 N -0.723 5.723 16 C -0.243 4.243 17 H 0.084 0.916 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.978 3.022 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.263 1.263 24 C -0.172 4.172 25 S 0.244 5.756 26 C -0.185 4.185 27 C -0.089 4.089 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.411 0.589 37 H 0.064 0.936 38 H 0.127 0.873 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.105 0.895 42 H 0.035 0.965 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.315 -2.194 -27.123 33.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.095 4.095 4 C -0.145 4.145 5 C -0.087 4.087 6 C -0.421 4.421 7 C 0.369 3.631 8 O -0.466 6.466 9 N -0.348 5.348 10 C 0.025 3.975 11 H 0.091 0.909 12 C -0.177 4.177 13 C 0.043 3.957 14 H 0.101 0.899 15 N -0.360 5.360 16 C -0.375 4.375 17 H 0.102 0.898 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.806 3.194 21 H -0.217 1.217 22 H -0.223 1.223 23 H -0.188 1.188 24 C -0.214 4.214 25 S 0.514 5.486 26 C -0.305 4.305 27 C -0.147 4.147 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.124 0.876 42 H 0.054 0.946 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.985 -2.099 -27.179 33.219 hybrid contribution -0.763 0.235 2.264 2.400 sum -19.748 -1.864 -24.915 31.847 Atomic orbital electron populations 1.21769 0.94672 1.02071 1.02305 1.21492 0.96411 0.95659 1.01987 1.20371 0.87578 0.97908 1.03663 1.18743 0.98575 1.06546 0.90616 1.20756 0.91251 0.96345 1.00328 1.24366 0.97472 1.21508 0.98801 1.17503 0.82779 0.75472 0.87315 1.90825 1.82477 1.52260 1.20994 1.45756 1.04489 1.73663 1.10875 1.22319 0.86042 0.98045 0.91127 0.90950 1.23752 0.92580 0.98747 1.02594 1.21253 0.94774 0.95015 0.84665 0.89939 1.42407 1.39926 1.47145 1.06556 1.19730 1.08979 1.15727 0.93056 0.89842 1.25670 1.02664 1.01040 0.97862 1.69844 1.44482 1.38626 1.09303 0.85074 0.78941 0.77259 0.78080 1.21749 1.22324 1.18786 1.24237 0.99141 0.96477 1.01517 1.82589 1.03689 1.67113 0.95197 1.24501 0.98096 1.06289 1.01570 1.20594 1.01932 1.04215 0.87943 0.92427 0.92935 0.91540 0.91213 0.93427 0.91291 0.89063 0.84689 0.75127 0.91688 0.85538 0.79697 0.94062 0.87643 0.94569 0.88909 0.89710 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.39 5.85 30.59 0.18 -1.21 16 3 C -0.06 -0.71 4.82 29.85 0.14 -0.57 16 4 C -0.13 -2.32 5.04 -21.05 -0.11 -2.43 16 5 C -0.05 -1.27 9.78 21.72 0.21 -1.06 16 6 C -0.30 -7.71 6.45 24.08 0.16 -7.55 16 7 C 0.58 19.36 7.78 86.42 0.67 20.03 16 8 O -0.58 -25.53 16.46 -4.36 -0.07 -25.61 16 9 N -0.70 -19.78 5.36 -444.08 -2.38 -22.16 16 10 C 0.13 4.49 4.09 45.52 0.19 4.68 16 11 H 0.07 3.19 7.50 -2.38 -0.02 3.17 16 12 C -0.14 -4.19 7.58 31.12 0.24 -3.96 16 13 C 0.15 5.95 4.57 45.58 0.21 6.16 16 14 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 15 N -0.72 -37.35 5.31 -320.17 -1.70 -39.05 16 16 C -0.24 -13.69 9.97 84.03 0.84 -12.86 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 18 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 19 N -0.97 -61.63 13.06 21.65 0.28 -61.34 16 20 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 C -0.17 -6.14 7.69 31.18 0.24 -5.90 16 25 S 0.24 3.86 22.10 -56.49 -1.25 2.62 16 26 C -0.18 -2.60 6.28 24.68 0.15 -2.45 16 27 C -0.09 -0.61 9.71 71.23 0.69 0.08 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.71 7.24 -2.39 -0.02 0.70 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.94 8.10 -2.39 -0.02 0.93 16 34 H 0.09 0.82 7.46 -2.39 -0.02 0.80 16 35 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.41 8.39 7.82 -92.71 -0.73 7.66 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.13 2.69 8.11 -2.38 -0.02 2.67 16 39 H 0.37 21.06 7.90 -92.71 -0.73 20.33 16 40 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.09 0.47 6.40 -2.39 -0.02 0.45 16 Total: -1.00 -75.92 384.28 1.45 -74.47 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.46 Total: 33.99 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 4.99 Total: -11.97 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -3.80 Total: -122.56 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.07 Total: -25.61 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.25 Total: 2.62 kcal Total: -75.92 1.45 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021025078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.116 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds