Wall clock time and date at job start Tue Mar 31 2020 13:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46834 * 2 1 4 4 C 1.53000 * 109.46924 * 240.00068 * 2 1 3 5 5 C 1.50694 * 109.47431 * 119.99796 * 2 1 3 6 6 C 1.33815 * 124.52169 * 59.72416 * 5 2 1 7 7 C 1.37476 * 115.10504 * 180.26458 * 6 5 2 8 8 C 1.36647 * 113.29097 * 0.02562 * 7 6 5 9 9 C 1.46590 * 125.45326 * 179.97438 * 8 7 6 10 10 O 1.21700 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99628 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99680 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.84858 * 23.79824 * 12 11 9 14 14 C 1.53776 * 113.61440 * 155.00233 * 12 11 9 15 15 C 1.53779 * 87.08150 * 139.97796 * 14 12 11 16 16 H 1.08996 * 113.61474 * 89.20412 * 15 14 12 17 17 N 1.46502 * 113.61256 * 220.01486 * 15 14 12 18 18 C 1.36937 * 120.00403 * 204.99905 * 17 15 14 19 19 H 1.08003 * 119.99525 * 359.97438 * 18 17 15 20 20 C 1.38805 * 120.00173 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00529 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47004 * 90.00160 * 22 20 18 24 24 H 1.48498 * 109.46982 * 210.00048 * 22 20 18 25 25 H 1.48499 * 109.46977 * 329.99817 * 22 20 18 26 26 C 1.53781 * 87.08128 * 334.56378 * 15 14 12 27 27 S 1.70618 * 124.52621 * 240.02571 * 5 2 1 28 28 H 1.08999 * 109.46737 * 299.99998 * 1 2 3 29 29 H 1.08993 * 109.47438 * 59.99782 * 1 2 3 30 30 H 1.09002 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46748 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46848 * 299.99756 * 3 2 1 33 33 H 1.08993 * 109.47229 * 60.00055 * 3 2 1 34 34 H 1.08994 * 109.47148 * 300.00021 * 4 2 1 35 35 H 1.09007 * 109.47009 * 59.99709 * 4 2 1 36 36 H 1.09002 * 109.47114 * 179.97438 * 4 2 1 37 37 H 1.08005 * 122.45134 * 0.24141 * 6 5 2 38 38 H 1.08002 * 123.35070 * 180.02562 * 7 6 5 39 39 H 0.96996 * 119.99903 * 0.02562 * 11 9 8 40 40 H 1.09004 * 113.61034 * 254.52753 * 14 12 11 41 41 H 1.08999 * 113.61624 * 25.42392 * 14 12 11 42 42 H 0.97007 * 119.99994 * 24.99963 * 17 15 14 43 43 H 0.96993 * 120.00184 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.61406 * 270.88532 * 26 15 14 45 45 H 1.09001 * 113.61041 * 139.98333 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 6 1.7612 -1.9850 1.5341 7 6 2.3156 -2.4355 2.7087 8 6 3.0511 -1.4847 3.3585 9 6 3.7558 -1.6766 4.6295 10 8 3.7132 -2.7549 5.1922 11 7 4.4510 -0.6589 5.1748 12 6 5.1559 -0.8508 6.4447 13 1 5.3985 -1.8953 6.6405 14 6 6.3446 0.1050 6.6400 15 6 5.9055 0.2250 8.1089 16 1 6.3540 -0.5242 8.7613 17 7 6.0142 1.5842 8.6447 18 6 6.1643 1.7792 9.9918 19 1 6.2021 0.9310 10.6593 20 6 6.2667 3.0670 10.4995 21 7 6.2191 4.1008 9.6862 22 14 6.4722 3.3329 12.3371 23 1 7.9178 3.3511 12.6760 24 1 5.8573 4.6289 12.7214 25 1 5.8046 2.2303 13.0744 26 6 4.4889 -0.1382 7.6331 27 16 3.0169 0.0055 2.4260 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 -1.7488 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.1510 -2.6140 0.9027 38 1 2.1829 -3.4407 3.0807 39 1 4.4847 0.2006 4.7265 40 1 7.3154 -0.3739 6.5122 41 1 6.2535 1.0354 6.0796 42 1 5.9798 2.3460 8.0452 43 1 6.2904 5.0007 10.0411 44 1 3.8905 0.7258 7.3442 45 1 3.9617 -0.8133 8.3071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023115268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:01 Heat of formation + Delta-G solvation = 10.180838 kcal Electronic energy + Delta-G solvation = -23984.902013 eV Core-core repulsion = 20515.294675 eV Total energy + Delta-G solvation = -3469.607337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94139 -39.03875 -37.92452 -36.07418 -34.10236 -32.74698 -30.07290 -29.15639 -27.86528 -27.69242 -25.55608 -25.12966 -24.27653 -22.54279 -20.88968 -20.77138 -19.78028 -18.68879 -17.76530 -17.12715 -16.35494 -15.95647 -15.53917 -15.08126 -14.72193 -14.53787 -14.49861 -14.39737 -14.06576 -13.35997 -13.19348 -13.05565 -13.01811 -12.78468 -12.48586 -12.26869 -12.13816 -12.08764 -11.92417 -11.72048 -11.41219 -11.40240 -11.27142 -10.93574 -10.88318 -10.65696 -10.50201 -10.35114 -10.07484 -9.87723 -9.62148 -8.98449 -8.90416 -8.80146 -8.68040 -6.99310 -5.80759 -3.09636 0.34041 1.25404 1.69397 2.22322 3.20449 3.23466 3.42364 3.47958 3.49435 4.07866 4.38517 4.48893 4.57767 4.76669 4.80639 5.05179 5.11776 5.13096 5.18094 5.22102 5.27707 5.31623 5.36620 5.42589 5.44070 5.46873 5.51029 5.66617 5.72766 5.84792 5.85135 5.87357 5.92429 5.99065 6.11529 6.15872 6.24585 6.30432 6.47321 6.61030 6.72410 7.05228 7.56113 7.68495 8.21058 8.37742 9.49137 10.05566 10.40214 11.41670 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.002327 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.394531 B =12031.985990 C =12874.642160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.000 4.000 3 C -0.156 4.156 4 C -0.136 4.136 5 C -0.183 4.183 6 C -0.153 4.153 7 C -0.055 4.055 8 C -0.270 4.270 9 C 0.588 3.412 10 O -0.535 6.535 11 N -0.709 5.709 12 C 0.118 3.882 13 H 0.112 0.888 14 C -0.159 4.159 15 C 0.170 3.830 16 H 0.081 0.919 17 N -0.710 5.710 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.176 4.176 27 S 0.209 5.791 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.396 0.604 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.080 0.920 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 -8.957 -24.456 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 C -0.214 4.214 4 C -0.194 4.194 5 C -0.303 4.303 6 C -0.184 4.184 7 C -0.088 4.088 8 C -0.391 4.391 9 C 0.374 3.626 10 O -0.414 6.414 11 N -0.359 5.359 12 C 0.013 3.987 13 H 0.130 0.870 14 C -0.199 4.199 15 C 0.057 3.943 16 H 0.099 0.901 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.218 4.218 27 S 0.479 5.521 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.061 -8.246 -23.590 26.582 hybrid contribution -0.665 -0.566 0.312 0.927 sum -9.726 -8.813 -23.277 26.723 Atomic orbital electron populations 1.21896 0.92849 1.02444 1.02301 1.19166 0.96023 0.94539 0.90479 1.22032 1.01689 0.94658 1.02991 1.21891 1.01480 1.00345 0.95715 1.24297 1.04906 0.99029 1.02040 1.19860 1.04697 0.95333 0.98496 1.20716 0.94507 1.00165 0.93384 1.24755 1.11889 0.99738 1.02685 1.17001 0.78390 0.84389 0.82811 1.90808 1.62445 1.25614 1.62569 1.45953 1.51526 1.13763 1.24615 1.22565 0.93730 1.00365 0.81997 0.87021 1.23880 0.96949 0.98746 1.00323 1.21344 0.92565 0.89440 0.90980 0.90110 1.42358 1.85927 1.00950 1.05544 1.19318 1.42116 0.92176 0.83876 0.90962 1.24767 1.02707 0.95522 0.97902 1.69654 1.57219 0.97743 1.33504 0.86175 0.77684 0.77183 0.85071 1.21659 1.21766 1.20679 1.24348 1.01276 0.99832 0.96391 1.83051 1.45466 1.11710 1.11884 0.92184 0.91871 0.92154 0.91858 0.91212 0.91782 0.92159 0.91887 0.92244 0.84121 0.83169 0.76958 0.91332 0.89958 0.78087 0.93448 0.90170 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.33 37.16 0.31 -0.49 16 2 C 0.00 0.00 0.90 -155.66 -0.14 -0.14 16 3 C -0.16 -0.96 7.52 37.16 0.28 -0.68 16 4 C -0.14 -0.77 8.33 37.16 0.31 -0.46 16 5 C -0.18 -1.57 4.97 -35.86 -0.18 -1.75 16 6 C -0.15 -1.38 9.18 -41.41 -0.38 -1.76 16 7 C -0.05 -0.61 10.01 -40.43 -0.40 -1.01 16 8 C -0.27 -3.36 6.45 -36.79 -0.24 -3.60 16 9 C 0.59 8.93 7.78 -12.89 -0.10 8.83 16 10 O -0.54 -9.86 16.44 5.19 0.09 -9.78 16 11 N -0.71 -10.02 5.35 -54.35 -0.29 -10.31 16 12 C 0.12 1.83 4.24 -67.12 -0.28 1.55 16 13 H 0.11 1.79 7.46 -51.93 -0.39 1.40 16 14 C -0.16 -2.54 7.58 -25.92 -0.20 -2.73 16 15 C 0.17 3.31 4.48 -67.12 -0.30 3.01 16 16 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 17 N -0.71 -17.51 5.40 -52.64 -0.28 -17.80 16 18 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.18 -3.15 7.68 -25.92 -0.20 -3.35 16 27 S 0.21 2.00 20.43 -107.50 -2.20 -0.19 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 7.84 -51.93 -0.41 -0.07 16 31 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 34 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.14 0.98 7.90 -52.48 -0.41 0.57 16 38 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.40 4.84 7.84 -40.82 -0.32 4.52 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 42 H 0.39 9.99 7.92 -40.82 -0.32 9.67 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -31.91 382.65 -10.26 -42.18 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.27 Total: 9.92 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.77 Total: -9.90 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.15 Total: -55.25 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.20 Total: -0.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.91 -10.26 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023115268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.356 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds