Wall clock time and date at job start Tue Mar 31 2020 13:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46834 * 2 1 4 4 C 1.53000 * 109.46924 * 240.00068 * 2 1 3 5 5 C 1.50694 * 109.47431 * 119.99796 * 2 1 3 6 6 C 1.33815 * 124.52169 * 59.72416 * 5 2 1 7 7 C 1.37476 * 115.10504 * 180.26458 * 6 5 2 8 8 C 1.36647 * 113.29097 * 0.02562 * 7 6 5 9 9 C 1.46590 * 125.45326 * 179.97438 * 8 7 6 10 10 O 1.21700 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99628 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99680 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.84858 * 23.79824 * 12 11 9 14 14 C 1.53776 * 113.61440 * 155.00233 * 12 11 9 15 15 C 1.53779 * 87.08150 * 139.97796 * 14 12 11 16 16 H 1.08996 * 113.61474 * 89.20412 * 15 14 12 17 17 N 1.46502 * 113.61256 * 220.01486 * 15 14 12 18 18 C 1.36937 * 120.00403 * 204.99905 * 17 15 14 19 19 H 1.08003 * 119.99525 * 359.97438 * 18 17 15 20 20 C 1.38805 * 120.00173 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00529 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47004 * 90.00160 * 22 20 18 24 24 H 1.48498 * 109.46982 * 210.00048 * 22 20 18 25 25 H 1.48499 * 109.46977 * 329.99817 * 22 20 18 26 26 C 1.53781 * 87.08128 * 334.56378 * 15 14 12 27 27 S 1.70618 * 124.52621 * 240.02571 * 5 2 1 28 28 H 1.08999 * 109.46737 * 299.99998 * 1 2 3 29 29 H 1.08993 * 109.47438 * 59.99782 * 1 2 3 30 30 H 1.09002 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46748 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46848 * 299.99756 * 3 2 1 33 33 H 1.08993 * 109.47229 * 60.00055 * 3 2 1 34 34 H 1.08994 * 109.47148 * 300.00021 * 4 2 1 35 35 H 1.09007 * 109.47009 * 59.99709 * 4 2 1 36 36 H 1.09002 * 109.47114 * 179.97438 * 4 2 1 37 37 H 1.08005 * 122.45134 * 0.24141 * 6 5 2 38 38 H 1.08002 * 123.35070 * 180.02562 * 7 6 5 39 39 H 0.96996 * 119.99903 * 0.02562 * 11 9 8 40 40 H 1.09004 * 113.61034 * 254.52753 * 14 12 11 41 41 H 1.08999 * 113.61624 * 25.42392 * 14 12 11 42 42 H 0.97007 * 119.99994 * 24.99963 * 17 15 14 43 43 H 0.96993 * 120.00184 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.61406 * 270.88532 * 26 15 14 45 45 H 1.09001 * 113.61041 * 139.98333 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 6 1.7612 -1.9850 1.5341 7 6 2.3156 -2.4355 2.7087 8 6 3.0511 -1.4847 3.3585 9 6 3.7558 -1.6766 4.6295 10 8 3.7132 -2.7549 5.1922 11 7 4.4510 -0.6589 5.1748 12 6 5.1559 -0.8508 6.4447 13 1 5.3985 -1.8953 6.6405 14 6 6.3446 0.1050 6.6400 15 6 5.9055 0.2250 8.1089 16 1 6.3540 -0.5242 8.7613 17 7 6.0142 1.5842 8.6447 18 6 6.1643 1.7792 9.9918 19 1 6.2021 0.9310 10.6593 20 6 6.2667 3.0670 10.4995 21 7 6.2191 4.1008 9.6862 22 14 6.4722 3.3329 12.3371 23 1 7.9178 3.3511 12.6760 24 1 5.8573 4.6289 12.7214 25 1 5.8046 2.2303 13.0744 26 6 4.4889 -0.1382 7.6331 27 16 3.0169 0.0055 2.4260 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 -1.7488 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.1510 -2.6140 0.9027 38 1 2.1829 -3.4407 3.0807 39 1 4.4847 0.2006 4.7265 40 1 7.3154 -0.3739 6.5122 41 1 6.2535 1.0354 6.0796 42 1 5.9798 2.3460 8.0452 43 1 6.2904 5.0007 10.0411 44 1 3.8905 0.7258 7.3442 45 1 3.9617 -0.8133 8.3071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023115268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:00 Heat of formation + Delta-G solvation = -8.756795 kcal Electronic energy + Delta-G solvation = -23985.723210 eV Core-core repulsion = 20515.294675 eV Total energy + Delta-G solvation = -3470.428535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16975 -39.85830 -39.18563 -36.79369 -35.80714 -34.34421 -31.91471 -30.10838 -28.32834 -28.11747 -26.76535 -26.55200 -25.83763 -23.93126 -22.11805 -21.43130 -21.10873 -19.85872 -19.07520 -18.61953 -17.58676 -16.88661 -16.62881 -16.24571 -16.12655 -15.96830 -15.29327 -15.27043 -14.98835 -14.93532 -14.56857 -14.02112 -13.90233 -13.61385 -13.54036 -13.34530 -13.17036 -12.96123 -12.83088 -12.82258 -12.57414 -12.42147 -12.24958 -12.18372 -12.07580 -11.95431 -11.90754 -11.78969 -11.54662 -11.49465 -11.12755 -10.87210 -10.16577 -9.65208 -9.52761 -8.99663 -7.95458 -5.23705 -0.51622 0.45423 0.91156 1.37595 1.48237 1.49213 1.57685 2.07519 2.13734 2.56949 3.35878 3.49397 3.62740 3.78313 3.81895 3.89718 3.93616 4.01424 4.23474 4.25079 4.28673 4.39506 4.52483 4.68264 4.71680 4.76892 4.85147 4.86872 4.87649 4.93249 5.00829 5.01261 5.05735 5.08732 5.12553 5.17102 5.30487 5.33044 5.34786 5.41529 5.43395 5.50016 5.62241 6.26890 6.40650 7.05158 7.33532 8.08376 8.32250 9.27688 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.002327 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.394531 B =12031.985990 C =12874.642160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.159 4.159 4 C -0.135 4.135 5 C -0.171 4.171 6 C -0.159 4.159 7 C -0.050 4.050 8 C -0.309 4.309 9 C 0.588 3.412 10 O -0.576 6.576 11 N -0.703 5.703 12 C 0.134 3.866 13 H 0.111 0.889 14 C -0.140 4.140 15 C 0.153 3.847 16 H 0.082 0.918 17 N -0.723 5.723 18 C -0.245 4.245 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.271 1.271 26 C -0.171 4.171 27 S 0.230 5.770 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.164 0.836 38 H 0.147 0.853 39 H 0.406 0.594 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.070 0.930 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -9.328 -26.286 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 C -0.217 4.217 4 C -0.193 4.193 5 C -0.291 4.291 6 C -0.189 4.189 7 C -0.085 4.085 8 C -0.429 4.429 9 C 0.376 3.624 10 O -0.458 6.458 11 N -0.353 5.353 12 C 0.029 3.971 13 H 0.129 0.871 14 C -0.180 4.180 15 C 0.042 3.958 16 H 0.100 0.900 17 N -0.360 5.360 18 C -0.377 4.377 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.196 1.196 26 C -0.213 4.213 27 S 0.500 5.500 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.181 0.819 38 H 0.165 0.835 39 H 0.242 0.758 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.662 -8.647 -25.443 28.556 hybrid contribution -0.547 -0.497 0.753 1.055 sum -10.209 -9.144 -24.689 28.238 Atomic orbital electron populations 1.21907 0.92015 1.02851 1.02663 1.19308 0.96601 0.94625 0.89805 1.22073 1.01584 0.94483 1.03532 1.21896 1.01138 1.00654 0.95621 1.24725 1.03312 0.98949 1.02091 1.20004 1.05026 0.95795 0.98067 1.20906 0.93796 0.99923 0.93834 1.24571 1.13774 1.01919 1.02653 1.17357 0.77899 0.83729 0.83427 1.90775 1.63978 1.27048 1.63984 1.45825 1.51194 1.14248 1.24016 1.22262 0.92982 0.99951 0.81898 0.87101 1.23690 0.97934 0.99134 0.97224 1.21642 0.93991 0.87167 0.92983 0.89982 1.42498 1.86343 1.02575 1.04622 1.19698 1.40326 0.92292 0.85360 0.90562 1.25545 1.03699 0.95481 1.01981 1.69798 1.59159 0.97816 1.35109 0.85169 0.77540 0.76855 0.80375 1.21311 1.22266 1.19635 1.24186 1.00044 0.99608 0.97445 1.82952 1.45446 1.10069 1.11493 0.93071 0.90319 0.91760 0.92091 0.89628 0.92371 0.91775 0.90360 0.92807 0.81859 0.83485 0.75774 0.89544 0.89476 0.79190 0.93982 0.91153 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.33 71.98 0.60 -0.64 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 3 C -0.16 -1.60 7.52 71.98 0.54 -1.05 16 4 C -0.13 -1.14 8.33 71.98 0.60 -0.54 16 5 C -0.17 -2.61 4.97 24.68 0.12 -2.48 16 6 C -0.16 -2.57 9.18 21.08 0.19 -2.38 16 7 C -0.05 -1.09 10.01 21.72 0.22 -0.87 16 8 C -0.31 -7.55 6.45 24.08 0.16 -7.40 16 9 C 0.59 17.86 7.78 86.42 0.67 18.53 16 10 O -0.58 -21.52 16.44 -4.35 -0.07 -21.59 16 11 N -0.70 -19.53 5.35 -444.08 -2.38 -21.90 16 12 C 0.13 4.09 4.24 45.52 0.19 4.29 16 13 H 0.11 3.49 7.46 -2.39 -0.02 3.48 16 14 C -0.14 -4.31 7.58 31.12 0.24 -4.08 16 15 C 0.15 5.93 4.48 45.52 0.20 6.13 16 16 H 0.08 3.15 8.10 -2.39 -0.02 3.13 16 17 N -0.72 -35.89 5.40 -320.45 -1.73 -37.62 16 18 C -0.24 -13.53 9.97 84.03 0.84 -12.69 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 21 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 22 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C -0.17 -6.10 7.68 31.12 0.24 -5.86 16 27 S 0.23 4.14 20.43 -56.49 -1.15 2.98 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.54 7.84 -2.39 -0.02 0.52 16 31 H 0.06 0.64 7.90 -2.39 -0.02 0.62 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.66 7.90 -2.39 -0.02 0.64 16 34 H 0.06 0.50 7.87 -2.39 -0.02 0.49 16 35 H 0.08 0.44 8.14 -2.38 -0.02 0.43 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.16 1.85 7.90 -2.91 -0.02 1.83 16 38 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.41 9.62 7.84 -92.71 -0.73 8.89 16 40 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.09 2.63 8.09 -2.39 -0.02 2.61 16 42 H 0.38 19.78 7.92 -92.70 -0.73 19.05 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.64 382.65 1.74 -66.90 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -0.47 Total: 34.42 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.23 Total: -12.90 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -3.82 Total: -117.91 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.07 Total: -21.59 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.15 Total: 2.98 kcal Total: -68.64 1.74 -66.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023115268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.147 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds