Wall clock time and date at job start Tue Mar 31 2020 13:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47445 * 2 1 4 4 C 1.33816 * 124.52245 * 89.99621 * 3 2 1 5 5 C 1.37472 * 115.09945 * 179.73176 * 4 3 2 6 6 C 1.36643 * 113.29968 * 0.45715 * 5 4 3 7 7 C 1.46584 * 125.45919 * 179.83991 * 6 5 4 8 8 O 1.21693 * 120.00093 * 359.72001 * 7 6 5 9 9 N 1.34777 * 119.99551 * 179.72000 * 7 6 5 10 10 C 1.46502 * 119.99636 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47292 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.70161 * 301.04638 * 11 10 9 13 13 C 1.52763 * 109.51194 * 180.92474 * 11 10 9 14 14 C 1.53040 * 109.38325 * 185.70629 * 13 11 10 15 15 C 1.53041 * 109.53914 * 61.24318 * 14 13 11 16 16 C 1.53195 * 109.30850 * 298.63011 * 15 14 13 17 17 N 1.46930 * 109.58563 * 61.39701 * 11 10 9 18 18 C 1.36936 * 120.62976 * 353.42217 * 17 11 10 19 19 H 1.07990 * 120.00062 * 19.64121 * 18 17 11 20 20 C 1.38812 * 119.99571 * 199.36605 * 18 17 11 21 21 N 1.31611 * 119.99951 * 219.21699 * 20 18 17 22 22 Si 1.86800 * 119.99877 * 39.22292 * 20 18 17 23 23 H 1.48499 * 109.47286 * 85.14365 * 22 20 18 24 24 H 1.48501 * 109.47118 * 205.14121 * 22 20 18 25 25 H 1.48495 * 109.47352 * 325.14295 * 22 20 18 26 26 S 1.70620 * 124.52295 * 269.98074 * 3 2 1 27 27 H 1.09001 * 109.47191 * 59.99746 * 1 2 3 28 28 H 1.08991 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46731 * 300.00011 * 1 2 3 30 30 H 1.09000 * 109.46751 * 240.00537 * 2 1 3 31 31 H 1.08994 * 109.47314 * 119.99894 * 2 1 3 32 32 H 1.08000 * 122.44836 * 0.02562 * 4 3 2 33 33 H 1.08000 * 123.34888 * 180.27664 * 5 4 3 34 34 H 0.96994 * 120.00526 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47514 * 59.99466 * 10 9 7 36 36 H 1.09004 * 109.47103 * 299.99883 * 10 9 7 37 37 H 1.09003 * 109.56179 * 65.67153 * 13 11 10 38 38 H 1.08998 * 109.38567 * 305.63588 * 13 11 10 39 39 H 1.09003 * 109.46038 * 301.21890 * 14 13 11 40 40 H 1.08996 * 109.44831 * 181.25544 * 14 13 11 41 41 H 1.08994 * 109.49649 * 178.68403 * 15 14 13 42 42 H 1.08991 * 109.49984 * 58.58268 * 15 14 13 43 43 H 1.08999 * 109.59073 * 294.85293 * 16 15 14 44 44 H 1.09000 * 109.70187 * 174.49242 * 16 15 14 45 45 H 0.97004 * 119.99934 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7428 3.4125 0.8774 6 6 2.8472 3.7232 -0.4491 7 6 3.3026 5.0080 -0.9883 8 8 3.6210 5.9067 -0.2321 9 7 3.3685 5.1938 -2.3215 10 6 3.8241 6.4777 -2.8604 11 6 3.8059 6.4244 -4.3893 12 1 4.4533 5.6193 -4.7367 13 6 4.3026 7.7549 -4.9522 14 6 4.1496 7.7510 -6.4749 15 6 2.6721 7.5915 -6.8405 16 6 2.1580 6.2536 -6.2995 17 7 2.4332 6.1894 -4.8576 18 6 1.4284 5.9212 -3.9668 19 1 1.5450 6.1845 -2.9260 20 6 0.2577 5.3160 -4.4027 21 7 -0.9028 5.6999 -3.9147 22 14 0.3293 3.9565 -5.6818 23 1 0.5791 2.6564 -5.0091 24 1 -0.9622 3.8956 -6.4123 25 1 1.4278 4.2366 -6.6409 26 16 2.3552 2.3323 -1.4057 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1447 1.7374 2.0964 33 1 2.9921 4.1022 1.6702 34 1 3.1151 4.4774 -2.9242 35 1 4.8390 6.6767 -2.5162 36 1 3.1615 7.2719 -2.5162 37 1 5.3523 7.8919 -4.6924 38 1 3.7139 8.5690 -4.5294 39 1 4.7192 6.9220 -6.8950 40 1 4.5244 8.6910 -6.8797 41 1 2.5613 7.6123 -7.9246 42 1 2.0983 8.4067 -6.3999 43 1 2.6684 5.4343 -6.8058 44 1 1.0842 6.1764 -6.4703 45 1 -1.7208 5.2767 -4.2190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024540882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:34 Heat of formation + Delta-G solvation = 17.105129 kcal Electronic energy + Delta-G solvation = -25757.425283 eV Core-core repulsion = 22288.118205 eV Total energy + Delta-G solvation = -3469.307078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.40187 -38.19106 -37.46829 -34.31428 -33.67071 -33.06655 -31.08260 -30.67327 -28.69533 -26.30562 -25.22422 -24.19874 -22.68154 -22.28614 -21.25181 -20.50068 -19.51449 -18.79622 -17.60974 -16.55690 -15.95352 -15.62501 -15.33099 -14.90993 -14.63736 -14.24768 -14.09469 -13.74890 -13.67977 -13.58335 -13.21830 -13.07299 -12.76669 -12.48777 -12.20414 -12.14157 -12.05111 -11.75089 -11.70195 -11.51064 -11.33825 -11.12576 -10.76468 -10.60513 -10.49652 -10.47890 -10.20099 -9.91556 -9.74636 -9.47900 -9.24125 -8.59218 -8.42285 -8.35940 -8.23019 -7.11004 -6.05791 -3.19604 0.77479 1.70585 2.14325 2.62560 3.35237 3.46491 3.52424 3.62857 3.80919 4.54561 4.67617 4.75698 4.96339 5.19651 5.21513 5.29598 5.29810 5.38562 5.44991 5.54643 5.56417 5.68452 5.72953 5.77690 5.86332 5.89153 5.97406 6.11687 6.13476 6.17838 6.21163 6.24543 6.38530 6.43802 6.45809 6.50528 6.56080 6.61243 6.77152 6.82751 6.99882 7.08026 7.86855 8.09428 8.28084 8.72098 8.90945 9.71475 10.09109 11.06669 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.004869 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.070159 B = 5749.145946 C = 7056.939205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C -0.207 4.207 4 C -0.153 4.153 5 C -0.066 4.066 6 C -0.251 4.251 7 C 0.585 3.415 8 O -0.550 6.550 9 N -0.693 5.693 10 C 0.133 3.867 11 C 0.163 3.837 12 H 0.035 0.965 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.140 4.140 16 C 0.147 3.853 17 N -0.598 5.598 18 C -0.284 4.284 19 H 0.097 0.903 20 C 0.044 3.956 21 N -0.871 5.871 22 Si 0.809 3.191 23 H -0.289 1.289 24 H -0.297 1.297 25 H -0.251 1.251 26 S 0.221 5.779 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.407 0.593 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 -7.760 2.818 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.327 4.327 4 C -0.185 4.185 5 C -0.099 4.099 6 C -0.372 4.372 7 C 0.371 3.629 8 O -0.431 6.431 9 N -0.343 5.343 10 C 0.010 3.990 11 C 0.057 3.943 12 H 0.052 0.948 13 C -0.168 4.168 14 C -0.145 4.145 15 C -0.179 4.179 16 C 0.021 3.979 17 N -0.323 5.323 18 C -0.411 4.411 19 H 0.114 0.886 20 C -0.158 4.158 21 N -0.510 5.510 22 Si 0.636 3.364 23 H -0.217 1.217 24 H -0.224 1.224 25 H -0.175 1.175 26 S 0.489 5.511 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.244 0.756 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.084 0.916 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.951 -7.407 1.783 11.013 hybrid contribution -0.417 -0.939 0.543 1.162 sum 7.535 -8.347 2.326 11.483 Atomic orbital electron populations 1.21818 0.94172 1.01877 1.02966 1.20098 0.96358 0.89606 1.03058 1.24275 1.08028 1.02067 0.98359 1.19848 1.05140 0.94291 0.99180 1.20640 0.97963 0.96151 0.95141 1.24685 1.14926 0.99663 0.97926 1.16887 0.77940 0.85448 0.82618 1.90761 1.50995 1.42908 1.58395 1.45858 1.65663 1.17060 1.05711 1.21364 0.98539 0.85891 0.93219 1.20627 0.87381 0.95058 0.91271 0.94763 1.21855 0.99843 0.99071 0.96004 1.21362 0.97015 1.00335 0.95814 1.22085 0.95940 1.00851 0.99051 1.21405 0.99148 0.93219 0.84124 1.44404 1.03620 1.82139 1.02099 1.18987 0.93118 1.35802 0.93143 0.88596 1.24978 0.94611 0.99819 0.96352 1.70187 0.97209 1.38729 1.44880 0.88178 0.77871 0.86832 0.83568 1.21697 1.22352 1.17549 1.83409 1.58858 1.02039 1.06756 0.92083 0.92117 0.92173 0.90852 0.90129 0.84379 0.83319 0.75596 0.92097 0.90669 0.92551 0.91507 0.92827 0.93140 0.93146 0.91835 0.95593 0.91602 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.90 37.16 0.37 -1.21 16 2 C -0.05 -0.55 6.36 -27.88 -0.18 -0.72 16 3 C -0.21 -2.80 5.53 -35.86 -0.20 -3.00 16 4 C -0.15 -2.06 9.99 -41.41 -0.41 -2.47 16 5 C -0.07 -1.04 10.01 -40.44 -0.40 -1.44 16 6 C -0.25 -4.49 6.45 -36.79 -0.24 -4.72 16 7 C 0.59 11.85 7.78 -12.89 -0.10 11.75 16 8 O -0.55 -12.39 16.84 5.19 0.09 -12.30 16 9 N -0.69 -13.56 3.67 -61.65 -0.23 -13.78 16 10 C 0.13 2.50 4.40 -4.04 -0.02 2.48 16 11 C 0.16 2.96 2.98 -67.82 -0.20 2.76 16 12 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 13 C -0.13 -2.01 5.35 -26.83 -0.14 -2.15 16 14 C -0.11 -1.60 5.89 -26.69 -0.16 -1.76 16 15 C -0.14 -2.40 6.08 -26.61 -0.16 -2.57 16 16 C 0.15 3.02 4.28 -3.71 -0.02 3.00 16 17 N -0.60 -12.97 2.83 -165.02 -0.47 -13.44 16 18 C -0.28 -7.21 7.74 -15.06 -0.12 -7.32 16 19 H 0.10 2.65 5.48 -52.49 -0.29 2.36 16 20 C 0.04 1.19 4.84 -17.43 -0.08 1.10 16 21 N -0.87 -25.36 13.97 55.49 0.78 -24.58 16 22 Si 0.81 19.48 26.45 -169.99 -4.50 14.98 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.25 -5.64 4.54 56.52 0.26 -5.38 16 26 S 0.22 3.52 22.10 -107.50 -2.38 1.14 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.41 8.01 6.61 -40.82 -0.27 7.74 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.59 7.45 -51.93 -0.39 1.21 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.03 0.53 6.82 -51.93 -0.35 0.18 16 44 H 0.07 1.50 5.09 -51.93 -0.26 1.24 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -30.12 363.92 -10.47 -40.59 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.19 Total: 8.18 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.06 Total: -6.27 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.08 Total: -51.81 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.50 Total: 14.98 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.38 Total: 1.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.12 -10.47 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024540882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.694 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds