Wall clock time and date at job start Tue Mar 31 2020 13:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47445 * 2 1 4 4 C 1.33816 * 124.52245 * 89.99621 * 3 2 1 5 5 C 1.37472 * 115.09945 * 179.73176 * 4 3 2 6 6 C 1.36643 * 113.29968 * 0.45715 * 5 4 3 7 7 C 1.46584 * 125.45919 * 179.83991 * 6 5 4 8 8 O 1.21693 * 120.00093 * 359.72001 * 7 6 5 9 9 N 1.34777 * 119.99551 * 179.72000 * 7 6 5 10 10 C 1.46502 * 119.99636 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47292 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.70161 * 301.04638 * 11 10 9 13 13 C 1.52763 * 109.51194 * 180.92474 * 11 10 9 14 14 C 1.53040 * 109.38325 * 185.70629 * 13 11 10 15 15 C 1.53041 * 109.53914 * 61.24318 * 14 13 11 16 16 C 1.53195 * 109.30850 * 298.63011 * 15 14 13 17 17 N 1.46930 * 109.58563 * 61.39701 * 11 10 9 18 18 C 1.36936 * 120.62976 * 353.42217 * 17 11 10 19 19 H 1.07990 * 120.00062 * 19.64121 * 18 17 11 20 20 C 1.38812 * 119.99571 * 199.36605 * 18 17 11 21 21 N 1.31611 * 119.99951 * 219.21699 * 20 18 17 22 22 Si 1.86800 * 119.99877 * 39.22292 * 20 18 17 23 23 H 1.48499 * 109.47286 * 85.14365 * 22 20 18 24 24 H 1.48501 * 109.47118 * 205.14121 * 22 20 18 25 25 H 1.48495 * 109.47352 * 325.14295 * 22 20 18 26 26 S 1.70620 * 124.52295 * 269.98074 * 3 2 1 27 27 H 1.09001 * 109.47191 * 59.99746 * 1 2 3 28 28 H 1.08991 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46731 * 300.00011 * 1 2 3 30 30 H 1.09000 * 109.46751 * 240.00537 * 2 1 3 31 31 H 1.08994 * 109.47314 * 119.99894 * 2 1 3 32 32 H 1.08000 * 122.44836 * 0.02562 * 4 3 2 33 33 H 1.08000 * 123.34888 * 180.27664 * 5 4 3 34 34 H 0.96994 * 120.00526 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47514 * 59.99466 * 10 9 7 36 36 H 1.09004 * 109.47103 * 299.99883 * 10 9 7 37 37 H 1.09003 * 109.56179 * 65.67153 * 13 11 10 38 38 H 1.08998 * 109.38567 * 305.63588 * 13 11 10 39 39 H 1.09003 * 109.46038 * 301.21890 * 14 13 11 40 40 H 1.08996 * 109.44831 * 181.25544 * 14 13 11 41 41 H 1.08994 * 109.49649 * 178.68403 * 15 14 13 42 42 H 1.08991 * 109.49984 * 58.58268 * 15 14 13 43 43 H 1.08999 * 109.59073 * 294.85293 * 16 15 14 44 44 H 1.09000 * 109.70187 * 174.49242 * 16 15 14 45 45 H 0.97004 * 119.99934 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7428 3.4125 0.8774 6 6 2.8472 3.7232 -0.4491 7 6 3.3026 5.0080 -0.9883 8 8 3.6210 5.9067 -0.2321 9 7 3.3685 5.1938 -2.3215 10 6 3.8241 6.4777 -2.8604 11 6 3.8059 6.4244 -4.3893 12 1 4.4533 5.6193 -4.7367 13 6 4.3026 7.7549 -4.9522 14 6 4.1496 7.7510 -6.4749 15 6 2.6721 7.5915 -6.8405 16 6 2.1580 6.2536 -6.2995 17 7 2.4332 6.1894 -4.8576 18 6 1.4284 5.9212 -3.9668 19 1 1.5450 6.1845 -2.9260 20 6 0.2577 5.3160 -4.4027 21 7 -0.9028 5.6999 -3.9147 22 14 0.3293 3.9565 -5.6818 23 1 0.5791 2.6564 -5.0091 24 1 -0.9622 3.8956 -6.4123 25 1 1.4278 4.2366 -6.6409 26 16 2.3552 2.3323 -1.4057 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1447 1.7374 2.0964 33 1 2.9921 4.1022 1.6702 34 1 3.1151 4.4774 -2.9242 35 1 4.8390 6.6767 -2.5162 36 1 3.1615 7.2719 -2.5162 37 1 5.3523 7.8919 -4.6924 38 1 3.7139 8.5690 -4.5294 39 1 4.7192 6.9220 -6.8950 40 1 4.5244 8.6910 -6.8797 41 1 2.5613 7.6123 -7.9246 42 1 2.0983 8.4067 -6.3999 43 1 2.6684 5.4343 -6.8058 44 1 1.0842 6.1764 -6.4703 45 1 -1.7208 5.2767 -4.2190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024540882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:33 Heat of formation + Delta-G solvation = -0.430388 kcal Electronic energy + Delta-G solvation = -25758.185680 eV Core-core repulsion = 22288.118205 eV Total energy + Delta-G solvation = -3470.067475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94606 -39.63000 -38.75008 -35.85340 -34.88529 -34.67508 -32.65814 -32.37098 -29.89964 -27.78616 -26.72730 -25.57491 -24.30088 -23.28408 -22.65017 -22.02621 -20.96359 -20.20056 -18.97823 -18.28384 -17.45264 -17.14075 -16.76638 -16.65776 -15.85666 -15.73847 -15.34771 -15.14399 -14.97408 -14.87804 -14.77220 -14.38284 -14.22706 -13.93402 -13.73767 -13.60829 -13.30027 -13.28113 -12.93444 -12.78910 -12.63524 -12.44189 -12.16423 -12.06521 -12.01726 -11.69367 -11.67127 -11.44526 -11.33529 -11.06202 -10.97625 -10.38180 -10.08483 -9.62444 -9.54722 -8.95152 -8.12343 -5.21571 -0.48152 0.46985 0.94393 1.39636 1.41864 1.51358 1.53018 2.13201 2.33351 2.54377 2.94429 3.40896 3.70423 3.84623 3.92545 4.12610 4.13026 4.21606 4.33348 4.34440 4.37592 4.44657 4.47919 4.52936 4.65922 4.73253 4.78241 4.89579 4.92896 4.98719 5.00460 5.09331 5.12522 5.17825 5.20347 5.28109 5.31300 5.32546 5.35292 5.44514 5.48786 5.66739 5.92264 6.23581 6.52012 6.97720 7.15115 7.75521 8.14280 9.03807 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.004869 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.070159 B = 5749.145946 C = 7056.939205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.186 4.186 4 C -0.156 4.156 5 C -0.056 4.056 6 C -0.293 4.293 7 C 0.580 3.420 8 O -0.585 6.585 9 N -0.693 5.693 10 C 0.136 3.864 11 C 0.162 3.838 12 H 0.056 0.944 13 C -0.124 4.124 14 C -0.102 4.102 15 C -0.135 4.135 16 C 0.139 3.861 17 N -0.609 5.609 18 C -0.252 4.252 19 H 0.065 0.935 20 C -0.011 4.011 21 N -0.928 5.928 22 Si 0.866 3.134 23 H -0.291 1.291 24 H -0.313 1.313 25 H -0.222 1.222 26 S 0.192 5.808 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.406 0.594 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.201 -9.541 2.112 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.092 4.092 3 C -0.306 4.306 4 C -0.186 4.186 5 C -0.090 4.090 6 C -0.414 4.414 7 C 0.368 3.632 8 O -0.468 6.468 9 N -0.342 5.342 10 C 0.012 3.988 11 C 0.056 3.944 12 H 0.073 0.927 13 C -0.163 4.163 14 C -0.139 4.139 15 C -0.174 4.174 16 C 0.015 3.985 17 N -0.335 5.335 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.693 3.307 23 H -0.219 1.219 24 H -0.242 1.242 25 H -0.145 1.145 26 S 0.461 5.539 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.192 0.808 33 H 0.171 0.829 34 H 0.243 0.757 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.191 -9.193 1.028 13.763 hybrid contribution -1.062 -0.379 0.867 1.423 sum 9.129 -9.572 1.895 13.362 Atomic orbital electron populations 1.21828 0.94092 1.03145 1.01786 1.20299 0.96231 0.87609 1.05056 1.24735 1.05912 1.03126 0.96817 1.20137 1.04495 0.93127 1.00829 1.20953 0.96396 0.97224 0.94418 1.24549 1.18141 0.99591 0.99084 1.17281 0.77267 0.86118 0.82551 1.90716 1.52802 1.44317 1.59002 1.45882 1.65486 1.17140 1.05700 1.21386 0.98739 0.84678 0.93983 1.20872 0.85677 0.97250 0.90579 0.92672 1.21830 1.01330 0.96450 0.96714 1.21358 0.95242 1.02459 0.94883 1.21998 0.97384 0.97696 1.00297 1.21469 0.97892 0.95763 0.83413 1.44535 1.04503 1.82084 1.02336 1.18828 0.93469 1.33245 0.92476 0.91788 1.25429 0.94323 1.01994 0.99048 1.70287 0.97818 1.40766 1.48336 0.87276 0.77789 0.83794 0.81820 1.21909 1.24154 1.14503 1.83420 1.59688 1.02204 1.08626 0.94472 0.89684 0.92179 0.89918 0.87021 0.80796 0.82948 0.75740 0.89903 0.94127 0.89256 0.93311 0.91187 0.90460 0.90620 0.93840 0.94329 0.94384 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.90 71.98 0.71 -2.10 16 2 C -0.05 -0.95 6.36 29.85 0.19 -0.76 16 3 C -0.19 -4.68 5.53 24.68 0.14 -4.54 16 4 C -0.16 -3.86 9.99 21.08 0.21 -3.65 16 5 C -0.06 -1.74 10.01 21.72 0.22 -1.52 16 6 C -0.29 -10.74 6.45 24.08 0.16 -10.59 16 7 C 0.58 24.50 7.78 86.42 0.67 25.17 16 8 O -0.58 -27.53 16.84 -4.33 -0.07 -27.60 16 9 N -0.69 -27.97 3.67 -467.17 -1.72 -29.69 16 10 C 0.14 5.14 4.40 86.38 0.38 5.52 16 11 C 0.16 5.64 2.98 44.83 0.13 5.77 16 12 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 13 C -0.12 -3.55 5.35 30.53 0.16 -3.39 16 14 C -0.10 -2.63 5.89 30.62 0.18 -2.45 16 15 C -0.13 -4.30 6.08 30.67 0.19 -4.11 16 16 C 0.14 5.52 4.28 86.36 0.37 5.89 16 17 N -0.61 -26.24 2.83 -676.01 -1.92 -28.15 16 18 C -0.25 -13.18 7.74 84.03 0.65 -12.53 16 19 H 0.06 3.75 5.48 -2.92 -0.02 3.73 16 20 C -0.01 -0.59 4.84 84.86 0.41 -0.18 16 21 N -0.93 -56.89 13.97 21.65 0.30 -56.58 16 22 Si 0.87 41.32 26.45 68.60 1.81 43.13 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 25 H -0.22 -9.39 4.54 99.48 0.45 -8.94 16 26 S 0.19 6.14 22.10 -56.49 -1.25 4.89 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.15 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.41 16.37 6.61 -92.71 -0.61 15.76 16 35 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.04 1.81 7.45 -2.38 -0.02 1.79 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 1.45 6.82 -2.39 -0.02 1.43 16 44 H 0.04 1.71 5.09 -2.39 -0.01 1.70 16 45 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -69.57 363.92 2.05 -67.52 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.12 Total: 29.94 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.77 Total: -3.46 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -3.33 Total: -114.42 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.07 Total: -27.60 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.81 Total: 43.13 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.25 Total: 4.89 kcal Total: -69.57 2.05 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024540882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.093 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds