Wall clock time and date at job start Tue Mar 31 2020 13:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47235 * 2 1 4 4 C 1.37474 * 123.34780 * 265.02327 * 3 2 1 5 5 C 1.33822 * 115.09687 * 179.97438 * 4 3 2 6 6 S 1.70619 * 110.95393 * 359.72564 * 5 4 3 7 7 C 1.36651 * 123.35213 * 85.00096 * 3 2 1 8 8 C 1.46582 * 125.45551 * 0.02562 * 7 3 2 9 9 O 1.21698 * 120.00187 * 0.02562 * 8 7 3 10 10 N 1.34776 * 119.99751 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00041 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47382 * 179.97438 * 11 10 8 13 13 H 1.09009 * 109.69880 * 60.13758 * 12 11 10 14 14 C 1.53621 * 109.66826 * 180.73209 * 12 11 10 15 15 C 1.53038 * 109.24268 * 174.54925 * 14 12 11 16 16 C 1.53044 * 109.53942 * 298.51307 * 15 14 12 17 17 C 1.53189 * 109.31134 * 61.36738 * 16 15 14 18 18 N 1.46928 * 108.77333 * 305.36271 * 17 16 15 19 19 C 1.36944 * 120.62904 * 233.58808 * 18 17 16 20 20 H 1.08003 * 119.99445 * 148.88571 * 19 18 17 21 21 C 1.38810 * 120.00011 * 329.15956 * 19 18 17 22 22 N 1.31617 * 120.00224 * 162.62100 * 21 19 18 23 23 Si 1.86804 * 119.99906 * 342.61579 * 21 19 18 24 24 H 1.48502 * 109.46971 * 89.16236 * 23 21 19 25 25 H 1.48500 * 109.47236 * 209.16167 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.16447 * 23 21 19 27 27 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47253 * 300.00240 * 1 2 3 29 29 H 1.08997 * 109.46951 * 59.99665 * 1 2 3 30 30 H 1.08996 * 109.47466 * 240.00076 * 2 1 3 31 31 H 1.09005 * 109.47631 * 119.99874 * 2 1 3 32 32 H 1.07994 * 122.45394 * 0.02562 * 4 3 2 33 33 H 1.08002 * 124.51858 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00178 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.47030 * 59.99989 * 11 10 8 36 36 H 1.08996 * 109.47090 * 299.99807 * 11 10 8 37 37 H 1.08995 * 109.62980 * 54.56324 * 14 12 11 38 38 H 1.09000 * 109.45722 * 294.43381 * 14 12 11 39 39 H 1.08999 * 109.46277 * 178.48984 * 15 14 12 40 40 H 1.09008 * 109.44986 * 58.52404 * 15 14 12 41 41 H 1.08992 * 109.49714 * 301.41368 * 16 15 14 42 42 H 1.09001 * 109.52141 * 181.33034 * 16 15 14 43 43 H 1.09001 * 109.58423 * 185.57807 * 17 16 15 44 44 H 1.08999 * 109.70475 * 65.22236 * 17 16 15 45 45 H 0.96996 * 120.00484 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3782 2.1002 -1.1441 5 6 2.8035 3.3545 -0.9528 6 16 2.7847 3.7591 0.7046 7 6 2.1890 2.1623 1.1371 8 6 1.9006 1.7023 2.4987 9 8 1.4853 0.5735 2.6844 10 7 2.0954 2.5294 3.5448 11 6 1.8077 2.0694 4.9057 12 6 2.1123 3.1927 5.8988 13 1 1.4918 4.0603 5.6740 14 6 1.8295 2.7090 7.3292 15 6 2.2649 3.7890 8.3222 16 6 3.7695 4.0335 8.1854 17 6 4.0756 4.5281 6.7682 18 7 3.5308 3.5637 5.8029 19 6 4.3285 3.0252 4.8287 20 1 4.1388 2.0253 4.4671 21 6 5.3842 3.7623 4.3101 22 7 6.3450 3.1573 3.6445 23 14 5.4411 5.6131 4.5567 24 1 6.1503 5.9220 5.8243 25 1 6.1615 6.2420 3.4206 26 1 4.0569 6.1468 4.6213 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.3108 1.6545 -2.1254 33 1 3.1123 4.0232 -1.7427 34 1 2.4267 3.4289 3.3968 35 1 2.4286 1.2035 5.1354 36 1 0.7561 1.7928 4.9809 37 1 2.3858 1.7918 7.5223 38 1 0.7624 2.5184 7.4437 39 1 2.0412 3.4607 9.3372 40 1 1.7263 4.7133 8.1125 41 1 4.3074 3.1038 8.3704 42 1 4.0835 4.7858 8.9090 43 1 5.1543 4.6091 6.6346 44 1 3.6137 5.5028 6.6114 45 1 7.0825 3.6724 3.2817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024814957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:56 Heat of formation + Delta-G solvation = 10.847342 kcal Electronic energy + Delta-G solvation = -26217.173055 eV Core-core repulsion = 22747.594619 eV Total energy + Delta-G solvation = -3469.578436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.48583 -38.30981 -37.30214 -34.25601 -33.05378 -32.46067 -31.11920 -30.71520 -29.01420 -26.27958 -25.18486 -24.18498 -22.68708 -22.12006 -21.18600 -20.42583 -19.51565 -18.37390 -17.73607 -16.55193 -15.80217 -15.43071 -15.27384 -14.98356 -14.47622 -14.21436 -13.81814 -13.73990 -13.69680 -13.37092 -13.23317 -13.08188 -12.68677 -12.50594 -12.20561 -12.01564 -11.95847 -11.65453 -11.64210 -11.31433 -11.21291 -10.85146 -10.74870 -10.64422 -10.46500 -10.36857 -10.20964 -9.96230 -9.60725 -9.49273 -9.25285 -8.71965 -8.55263 -8.17849 -8.12124 -6.95472 -5.98190 -3.39886 0.88831 1.85380 2.25401 2.69663 3.25588 3.40780 3.42996 3.69479 3.91244 4.46066 4.79469 5.03941 5.21854 5.27716 5.32160 5.37891 5.40839 5.47594 5.52192 5.64208 5.70392 5.74510 5.85466 5.92077 5.94577 5.99897 6.10098 6.18170 6.20758 6.24297 6.28847 6.37601 6.41410 6.46259 6.48406 6.56020 6.64564 6.68408 6.73522 6.80493 6.97101 7.13642 7.92748 8.20913 8.33022 8.82901 8.89042 9.66196 10.04680 11.16153 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.005191 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.893126 B = 5392.853442 C = 6722.869082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.035 4.035 4 C -0.147 4.147 5 C -0.245 4.245 6 S 0.219 5.781 7 C -0.250 4.250 8 C 0.587 3.413 9 O -0.546 6.546 10 N -0.690 5.690 11 C 0.137 3.863 12 C 0.162 3.838 13 H 0.037 0.963 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.135 4.135 17 C 0.125 3.875 18 N -0.604 5.604 19 C -0.266 4.266 20 H 0.093 0.907 21 C 0.033 3.967 22 N -0.899 5.899 23 Si 0.874 3.126 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.271 1.271 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.163 0.837 34 H 0.408 0.592 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.023 0.977 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 1.310 -3.404 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.050 4.050 4 C -0.179 4.179 5 C -0.383 4.383 6 S 0.489 5.511 7 C -0.370 4.370 8 C 0.373 3.627 9 O -0.428 6.428 10 N -0.340 5.340 11 C 0.013 3.987 12 C 0.055 3.945 13 H 0.054 0.946 14 C -0.167 4.167 15 C -0.146 4.146 16 C -0.175 4.175 17 C 0.000 4.000 18 N -0.330 5.330 19 C -0.395 4.395 20 H 0.111 0.889 21 C -0.167 4.167 22 N -0.541 5.541 23 Si 0.704 3.296 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.196 1.196 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.245 0.755 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.041 0.959 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.770 1.898 -2.536 10.271 hybrid contribution 0.359 0.452 -0.901 1.070 sum -9.412 2.350 -3.436 10.291 Atomic orbital electron populations 1.21584 0.94786 1.01264 1.01519 1.20343 0.96088 0.90953 1.03341 1.19398 0.97839 0.97331 0.90477 1.19800 1.04492 0.94289 0.99341 1.25229 1.09051 1.01711 1.02355 1.83395 1.58921 1.11212 0.97609 1.24520 1.15070 0.99607 0.97838 1.16829 0.78022 0.85035 0.82850 1.90713 1.47830 1.18916 1.85301 1.45824 1.65091 1.17353 1.05760 1.21269 0.99084 0.97793 0.80521 1.20853 0.86636 0.94568 0.92412 0.94585 1.21999 0.99785 0.99061 0.95874 1.21367 0.96598 0.98583 0.98030 1.21999 0.95899 1.01182 0.98375 1.21377 0.98652 0.91749 0.88236 1.44418 1.04450 1.51299 1.32790 1.18996 1.08545 0.98723 1.13187 0.88933 1.25312 0.96984 0.97105 0.97345 1.69802 1.10208 1.35124 1.38984 0.87126 0.77945 0.88448 0.76091 1.21498 1.23131 1.19563 0.92759 0.92211 0.93584 0.91843 0.88663 0.84454 0.81933 0.75530 0.91000 0.92213 0.91547 0.92565 0.93060 0.92782 0.91786 0.93098 0.90961 0.95895 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.78 37.16 0.36 -1.43 16 2 C -0.07 -1.02 5.50 -27.88 -0.15 -1.17 16 3 C -0.04 -0.58 5.16 -105.47 -0.54 -1.12 16 4 C -0.15 -2.08 9.96 -41.41 -0.41 -2.49 16 5 C -0.25 -3.41 10.92 29.18 0.32 -3.09 16 6 S 0.22 3.61 22.16 -107.50 -2.38 1.23 16 7 C -0.25 -4.58 6.45 -36.79 -0.24 -4.82 16 8 C 0.59 11.84 7.78 -12.90 -0.10 11.74 16 9 O -0.55 -11.73 13.72 5.19 0.07 -11.66 16 10 N -0.69 -13.65 3.84 -61.65 -0.24 -13.89 16 11 C 0.14 2.55 4.44 -4.04 -0.02 2.53 16 12 C 0.16 2.94 3.03 -67.38 -0.20 2.73 16 13 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 14 C -0.13 -1.97 5.40 -26.39 -0.14 -2.11 16 15 C -0.11 -1.59 5.88 -26.69 -0.16 -1.75 16 16 C -0.14 -2.28 6.08 -26.61 -0.16 -2.45 16 17 C 0.13 2.56 4.19 -3.71 -0.02 2.55 16 18 N -0.60 -13.07 2.71 -164.52 -0.45 -13.52 16 19 C -0.27 -6.74 7.42 -15.06 -0.11 -6.85 16 20 H 0.09 2.60 6.06 -52.48 -0.32 2.28 16 21 C 0.03 0.87 5.26 -17.43 -0.09 0.78 16 22 N -0.90 -26.05 13.97 55.49 0.78 -25.27 16 23 Si 0.87 20.94 24.32 -169.99 -4.13 16.81 16 24 H -0.29 -6.80 6.52 56.52 0.37 -6.43 16 25 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.27 -6.26 6.74 56.52 0.38 -5.88 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.91 7.60 -51.93 -0.39 0.52 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.10 1.67 6.32 -51.93 -0.33 1.34 16 32 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.41 8.28 6.50 -40.82 -0.27 8.01 16 35 H 0.07 1.49 7.42 -51.93 -0.39 1.11 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.65 4.65 -51.93 -0.24 1.40 16 44 H 0.02 0.47 7.04 -51.93 -0.37 0.10 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -29.26 357.92 -9.61 -38.87 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.98 Total: 9.00 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.67 Total: -6.96 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.09 Total: -52.68 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.13 Total: 16.81 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.38 Total: 1.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.26 -9.61 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024814957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.717 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds