Wall clock time and date at job start Tue Mar 31 2020 13:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47235 * 2 1 4 4 C 1.37474 * 123.34780 * 265.02327 * 3 2 1 5 5 C 1.33822 * 115.09687 * 179.97438 * 4 3 2 6 6 S 1.70619 * 110.95393 * 359.72564 * 5 4 3 7 7 C 1.36651 * 123.35213 * 85.00096 * 3 2 1 8 8 C 1.46582 * 125.45551 * 0.02562 * 7 3 2 9 9 O 1.21698 * 120.00187 * 0.02562 * 8 7 3 10 10 N 1.34776 * 119.99751 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00041 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47382 * 179.97438 * 11 10 8 13 13 H 1.09009 * 109.69880 * 60.13758 * 12 11 10 14 14 C 1.53621 * 109.66826 * 180.73209 * 12 11 10 15 15 C 1.53038 * 109.24268 * 174.54925 * 14 12 11 16 16 C 1.53044 * 109.53942 * 298.51307 * 15 14 12 17 17 C 1.53189 * 109.31134 * 61.36738 * 16 15 14 18 18 N 1.46928 * 108.77333 * 305.36271 * 17 16 15 19 19 C 1.36944 * 120.62904 * 233.58808 * 18 17 16 20 20 H 1.08003 * 119.99445 * 148.88571 * 19 18 17 21 21 C 1.38810 * 120.00011 * 329.15956 * 19 18 17 22 22 N 1.31617 * 120.00224 * 162.62100 * 21 19 18 23 23 Si 1.86804 * 119.99906 * 342.61579 * 21 19 18 24 24 H 1.48502 * 109.46971 * 89.16236 * 23 21 19 25 25 H 1.48500 * 109.47236 * 209.16167 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.16447 * 23 21 19 27 27 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47253 * 300.00240 * 1 2 3 29 29 H 1.08997 * 109.46951 * 59.99665 * 1 2 3 30 30 H 1.08996 * 109.47466 * 240.00076 * 2 1 3 31 31 H 1.09005 * 109.47631 * 119.99874 * 2 1 3 32 32 H 1.07994 * 122.45394 * 0.02562 * 4 3 2 33 33 H 1.08002 * 124.51858 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00178 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.47030 * 59.99989 * 11 10 8 36 36 H 1.08996 * 109.47090 * 299.99807 * 11 10 8 37 37 H 1.08995 * 109.62980 * 54.56324 * 14 12 11 38 38 H 1.09000 * 109.45722 * 294.43381 * 14 12 11 39 39 H 1.08999 * 109.46277 * 178.48984 * 15 14 12 40 40 H 1.09008 * 109.44986 * 58.52404 * 15 14 12 41 41 H 1.08992 * 109.49714 * 301.41368 * 16 15 14 42 42 H 1.09001 * 109.52141 * 181.33034 * 16 15 14 43 43 H 1.09001 * 109.58423 * 185.57807 * 17 16 15 44 44 H 1.08999 * 109.70475 * 65.22236 * 17 16 15 45 45 H 0.96996 * 120.00484 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3782 2.1002 -1.1441 5 6 2.8035 3.3545 -0.9528 6 16 2.7847 3.7591 0.7046 7 6 2.1890 2.1623 1.1371 8 6 1.9006 1.7023 2.4987 9 8 1.4853 0.5735 2.6844 10 7 2.0954 2.5294 3.5448 11 6 1.8077 2.0694 4.9057 12 6 2.1123 3.1927 5.8988 13 1 1.4918 4.0603 5.6740 14 6 1.8295 2.7090 7.3292 15 6 2.2649 3.7890 8.3222 16 6 3.7695 4.0335 8.1854 17 6 4.0756 4.5281 6.7682 18 7 3.5308 3.5637 5.8029 19 6 4.3285 3.0252 4.8287 20 1 4.1388 2.0253 4.4671 21 6 5.3842 3.7623 4.3101 22 7 6.3450 3.1573 3.6445 23 14 5.4411 5.6131 4.5567 24 1 6.1503 5.9220 5.8243 25 1 6.1615 6.2420 3.4206 26 1 4.0569 6.1468 4.6213 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.3108 1.6545 -2.1254 33 1 3.1123 4.0232 -1.7427 34 1 2.4267 3.4289 3.3968 35 1 2.4286 1.2035 5.1354 36 1 0.7561 1.7928 4.9809 37 1 2.3858 1.7918 7.5223 38 1 0.7624 2.5184 7.4437 39 1 2.0412 3.4607 9.3372 40 1 1.7263 4.7133 8.1125 41 1 4.3074 3.1038 8.3704 42 1 4.0835 4.7858 8.9090 43 1 5.1543 4.6091 6.6346 44 1 3.6137 5.5028 6.6114 45 1 7.0825 3.6724 3.2817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024814957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:55 Heat of formation + Delta-G solvation = -6.430717 kcal Electronic energy + Delta-G solvation = -26217.922288 eV Core-core repulsion = 22747.594619 eV Total energy + Delta-G solvation = -3470.327668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97582 -39.75206 -38.67472 -35.77510 -34.85665 -33.61744 -32.68347 -32.42431 -30.31182 -27.79066 -26.69219 -25.62566 -24.29674 -23.27777 -22.60488 -21.94756 -20.98275 -19.83857 -19.02773 -18.34136 -17.46103 -16.81473 -16.78318 -16.66777 -15.82906 -15.65381 -15.28413 -15.18352 -14.98594 -14.79749 -14.61537 -14.47422 -14.27152 -13.91028 -13.73173 -13.52593 -13.25518 -13.19984 -12.92517 -12.80047 -12.54121 -12.35176 -12.28452 -11.96970 -11.92794 -11.70219 -11.59021 -11.55351 -11.22829 -11.20603 -10.79112 -10.60564 -10.02333 -9.61222 -9.38726 -8.77682 -8.05824 -5.42852 -0.38633 0.58664 1.03927 1.32894 1.42494 1.48194 1.50766 2.19626 2.43752 2.46921 3.11015 3.32637 3.88677 3.92529 3.95601 4.07635 4.17276 4.21120 4.31717 4.35206 4.42807 4.50436 4.50900 4.57789 4.62646 4.70975 4.81499 4.87109 4.92129 4.93869 5.06100 5.09626 5.13665 5.16486 5.25112 5.30486 5.30983 5.36305 5.45925 5.56165 5.60878 5.64618 5.97309 6.27525 6.62927 6.97895 7.26836 7.69212 8.10188 9.12678 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.005191 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.893126 B = 5392.853442 C = 6722.869082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C -0.030 4.030 4 C -0.152 4.152 5 C -0.221 4.221 6 S 0.185 5.815 7 C -0.293 4.293 8 C 0.579 3.421 9 O -0.571 6.571 10 N -0.694 5.694 11 C 0.140 3.860 12 C 0.160 3.840 13 H 0.052 0.948 14 C -0.122 4.122 15 C -0.103 4.103 16 C -0.130 4.130 17 C 0.118 3.882 18 N -0.616 5.616 19 C -0.234 4.234 20 H 0.055 0.945 21 C -0.019 4.019 22 N -0.951 5.951 23 Si 0.929 3.071 24 H -0.283 1.283 25 H -0.315 1.315 26 H -0.255 1.255 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.175 0.825 33 H 0.200 0.800 34 H 0.404 0.596 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.033 0.967 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 2.632 -3.635 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.109 4.109 3 C -0.046 4.046 4 C -0.182 4.182 5 C -0.359 4.359 6 S 0.454 5.546 7 C -0.413 4.413 8 C 0.367 3.633 9 O -0.454 6.454 10 N -0.343 5.343 11 C 0.016 3.984 12 C 0.055 3.945 13 H 0.070 0.930 14 C -0.162 4.162 15 C -0.140 4.140 16 C -0.169 4.169 17 C -0.006 4.006 18 N -0.342 5.342 19 C -0.363 4.363 20 H 0.073 0.927 21 C -0.214 4.214 22 N -0.596 5.596 23 Si 0.759 3.241 24 H -0.210 1.210 25 H -0.244 1.244 26 H -0.179 1.179 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.192 0.808 33 H 0.217 0.783 34 H 0.240 0.760 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.735 3.239 -2.716 12.473 hybrid contribution 0.909 -0.065 -0.866 1.258 sum -10.825 3.174 -3.583 11.836 Atomic orbital electron populations 1.21520 0.93452 1.02204 1.01202 1.20388 0.97222 0.90215 1.03073 1.19840 0.96222 0.97770 0.90760 1.20120 1.03906 0.94194 1.00006 1.25651 1.06929 1.02091 1.01193 1.83441 1.59818 1.10905 1.00402 1.24469 1.18259 1.01120 0.97456 1.17206 0.77480 0.84751 0.83842 1.90679 1.49077 1.19698 1.85934 1.45870 1.65121 1.17118 1.06215 1.21291 0.99560 0.97041 0.80476 1.21079 0.84608 0.94705 0.94138 0.93025 1.21964 1.01634 0.98709 0.93867 1.21367 0.94637 0.98815 0.99205 1.21928 0.97771 1.01006 0.96227 1.21438 0.97040 0.91968 0.90173 1.44538 1.05814 1.51441 1.32448 1.18717 1.07942 0.96954 1.12701 0.92723 1.25777 0.97011 1.00577 0.98046 1.69943 1.11418 1.36397 1.41887 0.86214 0.78432 0.83982 0.75503 1.21000 1.24402 1.17903 0.91234 0.94802 0.91484 0.88978 0.91950 0.80764 0.78320 0.75978 0.94189 0.90119 0.93058 0.89391 0.90235 0.91407 0.93335 0.90585 0.93708 0.94871 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.78 71.98 0.70 -2.55 16 2 C -0.07 -2.05 5.50 29.85 0.16 -1.89 16 3 C -0.03 -0.96 5.16 -20.41 -0.11 -1.06 16 4 C -0.15 -3.88 9.96 21.08 0.21 -3.67 16 5 C -0.22 -5.62 10.92 66.82 0.73 -4.89 16 6 S 0.19 6.13 22.16 -56.49 -1.25 4.87 16 7 C -0.29 -11.04 6.45 24.08 0.16 -10.89 16 8 C 0.58 24.60 7.78 86.42 0.67 25.28 16 9 O -0.57 -25.90 13.72 -4.34 -0.06 -25.95 16 10 N -0.69 -28.64 3.84 -467.19 -1.80 -30.43 16 11 C 0.14 5.33 4.44 86.38 0.38 5.72 16 12 C 0.16 5.65 3.03 45.12 0.14 5.79 16 13 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 14 C -0.12 -3.49 5.40 30.82 0.17 -3.32 16 15 C -0.10 -2.63 5.88 30.62 0.18 -2.45 16 16 C -0.13 -4.09 6.08 30.67 0.19 -3.90 16 17 C 0.12 4.70 4.19 86.36 0.36 5.06 16 18 N -0.62 -26.66 2.71 -674.41 -1.83 -28.49 16 19 C -0.23 -12.26 7.42 84.03 0.62 -11.64 16 20 H 0.06 3.28 6.06 -2.91 -0.02 3.27 16 21 C -0.02 -1.03 5.26 84.86 0.45 -0.58 16 22 N -0.95 -57.69 13.97 21.65 0.30 -57.38 16 23 Si 0.93 44.09 24.32 68.60 1.67 45.76 16 24 H -0.28 -13.06 6.52 99.48 0.65 -12.41 16 25 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 26 H -0.25 -11.26 6.74 99.48 0.67 -10.59 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 1.03 7.60 -2.39 -0.02 1.01 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 2.14 8.12 -2.39 -0.02 2.13 16 31 H 0.06 2.27 6.32 -2.38 -0.02 2.25 16 32 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 34 H 0.40 17.04 6.50 -92.71 -0.60 16.43 16 35 H 0.04 1.76 7.42 -2.39 -0.02 1.74 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 2.02 4.65 -2.39 -0.01 2.01 16 44 H 0.03 1.26 7.04 -2.39 -0.02 1.25 16 45 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -67.83 357.92 2.35 -65.48 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.30 Total: 31.14 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 5.02 Total: -4.99 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -3.32 Total: -116.30 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.06 Total: -25.95 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.67 Total: 45.76 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.25 Total: 4.87 kcal Total: -67.83 2.35 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024814957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.052 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds