Wall clock time and date at job start Tue Mar 31 2020 13:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.47119 * 2 1 4 4 C 1.33811 * 124.52155 * 89.99872 * 3 2 1 5 5 C 1.37475 * 115.09755 * 180.02562 * 4 3 2 6 6 C 1.36644 * 113.29968 * 359.97438 * 5 4 3 7 7 C 1.46582 * 125.46374 * 179.97438 * 6 5 4 8 8 O 1.21706 * 119.99398 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00338 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 14 14 N 1.46505 * 109.46998 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99584 * 204.99673 * 14 13 12 16 16 H 1.07993 * 120.00301 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99501 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00187 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47101 * 90.00007 * 19 17 15 21 21 H 1.48504 * 109.47431 * 209.99887 * 19 17 15 22 22 H 1.48498 * 109.47164 * 330.00128 * 19 17 15 23 23 C 1.53002 * 109.46891 * 299.99597 * 13 12 11 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 13 12 25 25 S 1.70616 * 124.51747 * 270.26863 * 3 2 1 26 26 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47454 * 300.00524 * 1 2 3 28 28 H 1.09006 * 109.47047 * 60.00415 * 1 2 3 29 29 H 1.08997 * 109.46969 * 239.99459 * 2 1 3 30 30 H 1.09003 * 109.46544 * 119.99569 * 2 1 3 31 31 H 1.07997 * 122.45580 * 359.97153 * 4 3 2 32 32 H 1.08002 * 123.35062 * 180.02562 * 5 4 3 33 33 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.46845 * 325.00694 * 10 9 7 35 35 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 36 36 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 37 37 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47554 * 59.99639 * 13 12 11 40 40 H 0.97001 * 119.99745 * 24.99557 * 14 13 12 41 41 H 0.96998 * 120.00284 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47097 * 180.02562 * 23 13 12 43 43 H 1.09001 * 109.47142 * 300.00176 * 23 13 12 44 44 H 1.09001 * 109.47375 * 59.99908 * 24 23 13 45 45 H 1.09000 * 109.47140 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7367 3.4147 0.8774 6 6 2.8460 3.7236 -0.4492 7 6 3.2994 5.0090 -0.9885 8 8 3.6167 5.9082 -0.2322 9 7 3.3649 5.1950 -2.3217 10 6 3.8185 6.4795 -2.8607 11 6 3.2413 6.6763 -4.2638 12 6 3.7156 8.0175 -4.8269 13 6 5.2439 8.0290 -4.8980 14 7 5.6981 9.3135 -5.4366 15 6 6.9111 9.4016 -6.0659 16 1 7.5328 8.5242 -6.1655 17 6 7.3412 10.6186 -6.5767 18 7 6.5833 11.6879 -6.4557 19 14 8.9956 10.7387 -7.4357 20 1 8.8204 10.4740 -8.8864 21 1 9.5546 12.1013 -7.2451 22 1 9.9269 9.7364 -6.8586 23 6 5.8212 7.8322 -3.4948 24 6 5.3469 6.4910 -2.9317 25 16 2.3484 2.3346 -1.4058 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.1439 1.7378 2.0964 32 1 2.9815 4.1061 1.6702 33 1 3.1117 4.4784 -2.9245 34 1 3.4786 7.2863 -2.2114 35 1 2.1525 6.6677 -4.2133 36 1 3.5813 5.8694 -4.9130 37 1 3.3040 8.1579 -5.8264 38 1 3.3760 8.8247 -4.1778 39 1 5.5836 7.2220 -5.5470 40 1 5.1395 10.1015 -5.3475 41 1 6.8840 12.5384 -6.8123 42 1 6.9100 7.8409 -3.5453 43 1 5.4815 8.6394 -2.8457 44 1 5.6866 5.6839 -3.5808 45 1 5.7585 6.3506 -1.9322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026523600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:30 Heat of formation + Delta-G solvation = -19.946272 kcal Electronic energy + Delta-G solvation = -24094.250257 eV Core-core repulsion = 20623.336511 eV Total energy + Delta-G solvation = -3470.913747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08566 -38.53945 -37.68926 -34.86550 -34.16679 -33.04184 -30.78005 -30.39430 -29.20219 -27.33072 -25.49316 -23.63523 -22.78394 -22.39036 -21.83154 -20.71809 -19.84783 -19.15684 -18.12154 -17.01445 -16.59910 -15.97877 -15.51031 -15.13249 -14.99057 -14.64747 -14.37926 -13.94469 -13.81161 -13.67482 -13.53878 -13.26666 -13.01499 -12.73273 -12.50177 -12.31387 -12.03007 -11.98223 -11.79531 -11.60859 -11.41849 -11.20211 -11.03994 -10.80369 -10.75022 -10.65938 -10.18783 -10.10004 -10.05438 -9.74933 -9.57320 -9.13135 -8.94228 -8.88178 -8.82296 -6.91565 -5.73169 -3.01541 0.19816 1.10797 1.52987 2.09625 3.02238 3.09082 3.45407 3.50649 3.52373 4.19236 4.51599 4.60042 4.63823 4.74919 4.91049 4.92414 5.05280 5.06249 5.21401 5.28696 5.33457 5.42524 5.53781 5.62049 5.66641 5.67509 5.69374 5.74019 5.81177 5.87374 5.89853 6.03326 6.05360 6.24715 6.26131 6.31681 6.49526 6.58251 6.65963 6.74892 7.01322 7.17710 7.37106 7.73353 8.07216 8.45716 9.56606 10.15392 10.49972 11.49595 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034064 B = 0.002101 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.787238 B =13326.509196 C =13440.437126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.192 4.192 4 C -0.153 4.153 5 C -0.054 4.054 6 C -0.264 4.264 7 C 0.588 3.412 8 O -0.527 6.527 9 N -0.721 5.721 10 C 0.146 3.854 11 C -0.119 4.119 12 C -0.120 4.120 13 C 0.177 3.823 14 N -0.725 5.725 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.132 4.132 24 C -0.124 4.124 25 S 0.197 5.803 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.394 0.606 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.882 -25.327 12.835 31.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.312 4.312 4 C -0.184 4.184 5 C -0.087 4.087 6 C -0.385 4.385 7 C 0.374 3.626 8 O -0.405 6.405 9 N -0.371 5.371 10 C 0.043 3.957 11 C -0.158 4.158 12 C -0.159 4.159 13 C 0.067 3.933 14 N -0.366 5.366 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.173 4.173 24 C -0.163 4.163 25 S 0.465 5.535 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.586 -24.953 11.703 30.728 hybrid contribution 0.797 0.274 0.949 1.270 sum -12.788 -24.679 12.653 30.540 Atomic orbital electron populations 1.21809 0.93978 1.02245 1.02671 1.20167 0.96425 0.89342 1.03604 1.24258 1.07129 1.02069 0.97751 1.19960 1.04700 0.94113 0.99593 1.20770 0.96398 0.96203 0.95289 1.24670 1.16252 0.99445 0.98089 1.16954 0.77596 0.85553 0.82510 1.90852 1.49060 1.42575 1.57989 1.46056 1.67906 1.17136 1.05992 1.21172 0.94970 0.84454 0.95128 1.21762 0.99988 0.99452 0.94593 1.21750 0.97742 0.95385 1.01008 1.20243 0.90687 0.90161 0.92217 1.42430 1.20853 1.05716 1.67563 1.19242 0.94830 0.94473 1.28191 0.91232 1.24742 0.98638 0.95799 1.01948 1.69661 1.37560 0.99558 1.51414 0.86209 0.83820 0.76818 0.79466 1.21801 1.21825 1.20811 1.22225 1.01362 0.94580 0.99112 1.21908 0.94002 0.99447 1.00987 1.82947 1.60032 1.02709 1.07810 0.91808 0.92142 0.92320 0.90545 0.89753 0.83888 0.82929 0.77212 0.89162 0.91798 0.91523 0.91291 0.91907 0.93581 0.78297 0.93572 0.91742 0.92438 0.92262 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.06 -0.27 6.37 -27.88 -0.18 -0.45 16 3 C -0.19 -1.39 5.53 -35.86 -0.20 -1.59 16 4 C -0.15 -1.20 9.99 -41.41 -0.41 -1.61 16 5 C -0.05 -0.54 10.01 -40.44 -0.40 -0.94 16 6 C -0.26 -2.89 6.45 -36.79 -0.24 -3.13 16 7 C 0.59 8.02 7.75 -12.90 -0.10 7.92 16 8 O -0.53 -9.17 16.50 5.18 0.09 -9.09 16 9 N -0.72 -8.57 5.07 -55.14 -0.28 -8.85 16 10 C 0.15 2.00 2.46 -67.93 -0.17 1.84 16 11 C -0.12 -1.50 5.39 -26.73 -0.14 -1.65 16 12 C -0.12 -1.93 5.39 -26.73 -0.14 -2.07 16 13 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 14 N -0.73 -18.21 5.12 -53.43 -0.27 -18.49 16 15 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 19 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.13 -2.43 5.50 -26.73 -0.15 -2.58 16 24 C -0.12 -1.90 5.49 -26.73 -0.15 -2.04 16 25 S 0.20 1.54 22.10 -107.50 -2.38 -0.84 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.39 3.66 7.72 -40.82 -0.31 3.35 16 34 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 41 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -32.67 380.43 -11.09 -43.76 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.33 Total: 8.49 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.35 Total: -10.59 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.17 Total: -55.05 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.38 Total: -0.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.67 -11.09 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026523600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.813 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds