Wall clock time and date at job start Tue Mar 31 2020 13:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.47119 * 2 1 4 4 C 1.33811 * 124.52155 * 89.99872 * 3 2 1 5 5 C 1.37475 * 115.09755 * 180.02562 * 4 3 2 6 6 C 1.36644 * 113.29968 * 359.97438 * 5 4 3 7 7 C 1.46582 * 125.46374 * 179.97438 * 6 5 4 8 8 O 1.21706 * 119.99398 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00338 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 14 14 N 1.46505 * 109.46998 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99584 * 204.99673 * 14 13 12 16 16 H 1.07993 * 120.00301 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99501 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00187 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47101 * 90.00007 * 19 17 15 21 21 H 1.48504 * 109.47431 * 209.99887 * 19 17 15 22 22 H 1.48498 * 109.47164 * 330.00128 * 19 17 15 23 23 C 1.53002 * 109.46891 * 299.99597 * 13 12 11 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 13 12 25 25 S 1.70616 * 124.51747 * 270.26863 * 3 2 1 26 26 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47454 * 300.00524 * 1 2 3 28 28 H 1.09006 * 109.47047 * 60.00415 * 1 2 3 29 29 H 1.08997 * 109.46969 * 239.99459 * 2 1 3 30 30 H 1.09003 * 109.46544 * 119.99569 * 2 1 3 31 31 H 1.07997 * 122.45580 * 359.97153 * 4 3 2 32 32 H 1.08002 * 123.35062 * 180.02562 * 5 4 3 33 33 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.46845 * 325.00694 * 10 9 7 35 35 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 36 36 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 37 37 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47554 * 59.99639 * 13 12 11 40 40 H 0.97001 * 119.99745 * 24.99557 * 14 13 12 41 41 H 0.96998 * 120.00284 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47097 * 180.02562 * 23 13 12 43 43 H 1.09001 * 109.47142 * 300.00176 * 23 13 12 44 44 H 1.09001 * 109.47375 * 59.99908 * 24 23 13 45 45 H 1.09000 * 109.47140 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7367 3.4147 0.8774 6 6 2.8460 3.7236 -0.4492 7 6 3.2994 5.0090 -0.9885 8 8 3.6167 5.9082 -0.2322 9 7 3.3649 5.1950 -2.3217 10 6 3.8185 6.4795 -2.8607 11 6 3.2413 6.6763 -4.2638 12 6 3.7156 8.0175 -4.8269 13 6 5.2439 8.0290 -4.8980 14 7 5.6981 9.3135 -5.4366 15 6 6.9111 9.4016 -6.0659 16 1 7.5328 8.5242 -6.1655 17 6 7.3412 10.6186 -6.5767 18 7 6.5833 11.6879 -6.4557 19 14 8.9956 10.7387 -7.4357 20 1 8.8204 10.4740 -8.8864 21 1 9.5546 12.1013 -7.2451 22 1 9.9269 9.7364 -6.8586 23 6 5.8212 7.8322 -3.4948 24 6 5.3469 6.4910 -2.9317 25 16 2.3484 2.3346 -1.4058 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.1439 1.7378 2.0964 32 1 2.9815 4.1061 1.6702 33 1 3.1117 4.4784 -2.9245 34 1 3.4786 7.2863 -2.2114 35 1 2.1525 6.6677 -4.2133 36 1 3.5813 5.8694 -4.9130 37 1 3.3040 8.1579 -5.8264 38 1 3.3760 8.8247 -4.1778 39 1 5.5836 7.2220 -5.5470 40 1 5.1395 10.1015 -5.3475 41 1 6.8840 12.5384 -6.8123 42 1 6.9100 7.8409 -3.5453 43 1 5.4815 8.6394 -2.8457 44 1 5.6866 5.6839 -3.5808 45 1 5.7585 6.3506 -1.9322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026523600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:29 Heat of formation + Delta-G solvation = -39.880331 kcal Electronic energy + Delta-G solvation = -24095.114663 eV Core-core repulsion = 20623.336511 eV Total energy + Delta-G solvation = -3471.778153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.16968 -39.53653 -38.70892 -36.39747 -34.79496 -34.56279 -32.52837 -31.71537 -30.13552 -28.67489 -26.31819 -25.40897 -23.71663 -23.30292 -22.94232 -21.91655 -21.14192 -20.16814 -19.16299 -18.79362 -17.53023 -16.91082 -16.84804 -16.30128 -16.13138 -15.68289 -15.38594 -15.18489 -15.05542 -14.95231 -14.67544 -14.37219 -14.05002 -13.80555 -13.48462 -13.31624 -13.14908 -13.10804 -12.86842 -12.81100 -12.49327 -12.36520 -12.32195 -12.15590 -12.08076 -12.04989 -11.70229 -11.66856 -11.48790 -11.24150 -11.14430 -10.84241 -10.20625 -9.64898 -9.52916 -8.99016 -7.92900 -5.20999 -0.52961 0.44763 0.87893 1.37234 1.46829 1.48578 1.56798 2.02235 2.14481 2.56983 3.39720 3.64799 3.71636 3.78030 3.86652 3.90394 4.14727 4.26915 4.33613 4.35184 4.37812 4.41502 4.48900 4.50517 4.57712 4.63537 4.80167 4.83409 4.92507 4.97907 5.04689 5.07763 5.10743 5.15258 5.20947 5.23469 5.26528 5.35832 5.40427 5.42538 5.50824 5.54634 5.62924 6.29779 6.41240 7.08421 7.35217 8.12857 8.35356 9.30741 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034064 B = 0.002101 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.787238 B =13326.509196 C =13440.437126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.163 4.163 5 C -0.056 4.056 6 C -0.303 4.303 7 C 0.586 3.414 8 O -0.577 6.577 9 N -0.708 5.708 10 C 0.153 3.847 11 C -0.106 4.106 12 C -0.112 4.112 13 C 0.172 3.828 14 N -0.739 5.739 15 C -0.235 4.235 16 H 0.075 0.925 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.971 3.029 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.271 1.271 23 C -0.122 4.122 24 C -0.113 4.113 25 S 0.240 5.760 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.798 -28.934 12.436 34.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.303 4.303 4 C -0.193 4.193 5 C -0.090 4.090 6 C -0.423 4.423 7 C 0.374 3.626 8 O -0.458 6.458 9 N -0.358 5.358 10 C 0.048 3.952 11 C -0.145 4.145 12 C -0.151 4.151 13 C 0.064 3.936 14 N -0.378 5.378 15 C -0.367 4.367 16 H 0.093 0.907 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.800 3.200 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.196 1.196 23 C -0.163 4.163 24 C -0.152 4.152 25 S 0.508 5.492 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.181 0.819 32 H 0.161 0.839 33 H 0.247 0.753 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.517 -28.644 11.289 34.039 hybrid contribution 1.026 1.262 1.140 1.987 sum -13.491 -27.382 12.429 32.958 Atomic orbital electron populations 1.21816 0.93471 1.03117 1.02277 1.20319 0.96725 0.87730 1.04905 1.24707 1.05195 1.03026 0.97354 1.20096 1.05010 0.93251 1.00943 1.20925 0.96039 0.97092 0.94970 1.24494 1.18884 0.99794 0.99172 1.17348 0.76683 0.86038 0.82510 1.90820 1.51387 1.44496 1.59106 1.45825 1.67283 1.16833 1.05869 1.20930 0.93722 0.84878 0.95647 1.21670 1.01435 0.97819 0.93538 1.21632 0.94824 0.97427 1.01241 1.20494 0.93245 0.87777 0.92097 1.42670 1.20119 1.07267 1.67741 1.19626 0.95629 0.94507 1.26972 0.90676 1.25559 1.02274 0.95702 1.03660 1.69821 1.39370 0.99860 1.53146 0.85167 0.79885 0.76477 0.78422 1.21240 1.22464 1.19598 1.22027 0.99823 0.96082 0.98375 1.21770 0.95303 0.97776 1.00337 1.82710 1.58841 1.00584 1.07037 0.90368 0.92524 0.92767 0.89412 0.88340 0.81887 0.83871 0.75316 0.91409 0.89229 0.89259 0.91169 0.92810 0.93265 0.79701 0.94163 0.93964 0.94211 0.90462 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 71.98 0.71 -0.15 16 2 C -0.06 -0.37 6.37 29.85 0.19 -0.18 16 3 C -0.18 -2.14 5.53 24.68 0.14 -2.01 16 4 C -0.16 -2.25 9.99 21.08 0.21 -2.04 16 5 C -0.06 -1.10 10.01 21.72 0.22 -0.88 16 6 C -0.30 -6.40 6.45 24.08 0.16 -6.24 16 7 C 0.59 15.92 7.75 86.42 0.67 16.59 16 8 O -0.58 -20.83 16.50 -4.37 -0.07 -20.90 16 9 N -0.71 -15.83 5.07 -446.59 -2.27 -18.10 16 10 C 0.15 4.04 2.46 44.99 0.11 4.15 16 11 C -0.11 -2.41 5.39 30.59 0.16 -2.25 16 12 C -0.11 -3.51 5.39 30.59 0.16 -3.35 16 13 C 0.17 6.73 2.77 44.99 0.12 6.86 16 14 N -0.74 -37.77 5.12 -322.95 -1.65 -39.43 16 15 C -0.24 -13.23 9.93 84.03 0.83 -12.39 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 18 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 19 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C -0.12 -4.60 5.50 30.59 0.17 -4.44 16 24 C -0.11 -3.39 5.49 30.60 0.17 -3.22 16 25 S 0.24 3.14 22.10 -56.49 -1.25 1.89 16 26 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.41 6.52 7.72 -92.70 -0.72 5.80 16 34 H 0.07 2.15 7.58 -2.39 -0.02 2.14 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 40 H 0.37 20.49 7.80 -92.71 -0.72 19.77 16 41 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -72.76 380.43 1.12 -71.64 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.45 Total: 29.92 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.49 Total: -13.74 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -3.64 Total: -117.76 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.07 Total: -20.90 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.25 Total: 1.89 kcal Total: -72.76 1.12 -71.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026523600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.762 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds