Wall clock time and date at job start Tue Mar 31 2020 13:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47177 * 2 1 4 4 C 1.33815 * 124.52402 * 89.98665 * 3 2 1 5 5 C 1.37470 * 115.10427 * 180.02562 * 4 3 2 6 6 C 1.36646 * 113.29507 * 359.97438 * 5 4 3 7 7 C 1.46582 * 125.45802 * 180.02562 * 6 5 4 8 8 O 1.21702 * 119.99857 * 318.76587 * 7 6 5 9 9 N 1.34771 * 119.99978 * 138.76598 * 7 6 5 10 10 C 1.46930 * 120.63051 * 183.78687 * 9 7 6 11 11 C 1.53628 * 108.54163 * 126.37243 * 10 9 7 12 12 C 1.53042 * 109.24685 * 54.85271 * 11 10 9 13 13 C 1.53044 * 109.53911 * 298.51765 * 12 11 10 14 14 H 1.09004 * 109.49374 * 301.41137 * 13 12 11 15 15 N 1.46497 * 109.49440 * 181.31337 * 13 12 11 16 16 C 1.46501 * 120.00175 * 300.15397 * 15 13 12 17 17 C 1.36940 * 119.99645 * 120.16434 * 15 13 12 18 18 H 1.07991 * 120.00514 * 22.30898 * 17 15 13 19 19 C 1.38817 * 119.99627 * 202.30668 * 17 15 13 20 20 N 1.31623 * 119.99708 * 14.58954 * 19 17 15 21 21 Si 1.86791 * 120.00145 * 194.58531 * 19 17 15 22 22 H 1.48494 * 109.47392 * 94.96673 * 21 19 17 23 23 H 1.48502 * 109.47424 * 214.97294 * 21 19 17 24 24 H 1.48503 * 109.47231 * 334.97032 * 21 19 17 25 25 C 1.46927 * 120.63116 * 4.06741 * 9 7 6 26 26 S 1.70619 * 124.52226 * 270.02351 * 3 2 1 27 27 H 1.09001 * 109.46595 * 299.99885 * 1 2 3 28 28 H 1.08996 * 109.47131 * 59.99808 * 1 2 3 29 29 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47094 * 240.00022 * 2 1 3 31 31 H 1.09003 * 109.47455 * 119.99963 * 2 1 3 32 32 H 1.08004 * 122.44784 * 0.03563 * 4 3 2 33 33 H 1.08001 * 123.35231 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.58811 * 246.20228 * 10 9 7 35 35 H 1.08990 * 109.58499 * 6.63182 * 10 9 7 36 36 H 1.09008 * 109.63312 * 294.86628 * 11 10 9 37 37 H 1.08994 * 109.43388 * 174.73147 * 11 10 9 38 38 H 1.08992 * 109.46269 * 178.49196 * 12 11 10 39 39 H 1.09001 * 109.45636 * 58.53236 * 12 11 10 40 40 H 1.09002 * 109.46442 * 95.00310 * 16 15 13 41 41 H 1.08993 * 109.47203 * 215.00456 * 16 15 13 42 42 H 1.08998 * 109.47008 * 335.00807 * 16 15 13 43 43 H 0.97002 * 119.99579 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58904 * 353.37440 * 25 9 7 45 45 H 1.09004 * 109.58819 * 113.65785 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2849 2.1359 1.1025 5 6 2.7365 3.4147 0.8775 6 6 2.8461 3.7235 -0.4491 7 6 3.3007 5.0085 -0.9883 8 8 2.9313 6.0485 -0.4753 9 7 4.1275 5.0384 -2.0521 10 6 4.6576 6.3140 -2.5527 11 6 6.1890 6.2131 -2.6222 12 6 6.5767 4.9971 -3.4666 13 6 6.0398 3.7243 -2.8078 14 1 6.4468 3.6366 -1.8005 15 7 6.4382 2.5583 -3.6002 16 6 6.0137 2.4425 -4.9976 17 6 7.2072 1.5764 -3.0345 18 1 7.2255 1.4558 -1.9616 19 6 7.9631 0.7362 -3.8405 20 7 8.1739 1.0484 -5.1017 21 14 8.6813 -0.8373 -3.1352 22 1 7.7652 -1.9707 -3.4200 23 1 10.0034 -1.1007 -3.7580 24 1 8.8464 -0.6913 -1.6666 25 6 4.5112 3.7964 -2.7371 26 16 2.3541 2.3326 -1.4057 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1444 1.7375 2.0965 33 1 2.9804 4.1064 1.6703 34 1 4.2562 6.5116 -3.5467 35 1 4.3734 7.1189 -1.8750 36 1 6.5947 6.1019 -1.6165 37 1 6.5916 7.1169 -3.0794 38 1 7.6624 4.9375 -3.5405 39 1 6.1499 5.0971 -4.4646 40 1 6.7986 2.8274 -5.6487 41 1 5.8259 1.3954 -5.2347 42 1 5.1010 3.0187 -5.1490 43 1 8.7025 0.4615 -5.6647 44 1 4.1303 2.9398 -2.1811 45 1 4.0961 3.7917 -3.7449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027480837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:41 Heat of formation + Delta-G solvation = 17.730717 kcal Electronic energy + Delta-G solvation = -25810.981566 eV Core-core repulsion = 22341.701616 eV Total energy + Delta-G solvation = -3469.279950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01603 -38.11426 -37.25818 -34.94047 -33.86239 -32.46495 -31.50171 -29.07009 -28.49405 -26.06514 -25.81292 -24.48831 -23.59045 -22.44403 -21.85546 -20.47304 -19.36008 -18.21693 -17.84759 -16.75305 -16.05994 -15.96235 -15.25533 -14.95380 -14.75696 -14.26307 -14.18871 -13.92349 -13.67758 -13.52704 -13.15616 -13.00268 -12.73977 -12.69805 -12.56988 -12.08528 -12.03542 -11.81634 -11.58173 -11.25157 -11.13434 -10.96557 -10.87268 -10.81419 -10.61938 -10.42340 -10.35427 -10.22155 -9.95091 -9.80434 -9.77017 -8.71156 -8.59974 -8.34593 -8.26488 -6.81154 -5.76962 -3.23026 0.66679 1.49010 1.96048 2.52226 3.00965 3.33656 3.35034 3.42541 3.43505 4.43109 4.58849 4.69232 4.90552 5.11437 5.17276 5.25462 5.26746 5.29046 5.40000 5.43490 5.51000 5.56543 5.60373 5.67413 5.68827 5.75473 5.87446 5.97134 6.00031 6.03513 6.09418 6.18717 6.23442 6.35490 6.39527 6.43412 6.65626 6.72454 6.85465 6.95199 7.30507 7.52893 7.68016 7.77466 8.24269 8.34838 9.18322 9.80938 10.29409 11.27679 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.005425 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.252523 B = 5160.366721 C = 7296.564993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.210 4.210 4 C -0.154 4.154 5 C -0.063 4.063 6 C -0.266 4.266 7 C 0.591 3.409 8 O -0.543 6.543 9 N -0.599 5.599 10 C 0.115 3.885 11 C -0.131 4.131 12 C -0.132 4.132 13 C 0.171 3.829 14 H 0.066 0.934 15 N -0.591 5.591 16 C 0.160 3.840 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.077 3.923 26 S 0.239 5.761 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.032 0.968 41 H 0.042 0.958 42 H -0.001 1.001 43 H 0.252 0.748 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.569 2.827 7.000 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.330 4.330 4 C -0.184 4.184 5 C -0.096 4.096 6 C -0.387 4.387 7 C 0.379 3.621 8 O -0.423 6.423 9 N -0.331 5.331 10 C -0.007 4.007 11 C -0.170 4.170 12 C -0.172 4.172 13 C 0.062 3.938 14 H 0.084 0.916 15 N -0.313 5.313 16 C 0.016 3.984 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.049 4.049 26 S 0.509 5.491 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.763 2.947 5.550 14.226 hybrid contribution 0.725 -0.726 1.786 2.060 sum -12.038 2.221 7.337 14.271 Atomic orbital electron populations 1.21793 0.94318 1.01969 1.02412 1.20135 0.96070 0.89648 1.03683 1.24478 1.07190 1.02327 0.98961 1.19826 1.05183 0.94085 0.99330 1.20546 0.98083 0.96363 0.94655 1.24483 1.16427 0.99494 0.98271 1.17045 0.78387 0.87106 0.79602 1.90778 1.57865 1.33329 1.60307 1.48068 1.46163 1.08887 1.29972 1.21723 0.94096 0.85428 0.99483 1.22014 0.94480 0.99305 1.01232 1.22126 1.01953 0.94336 0.98783 1.20538 0.89993 0.87414 0.95869 0.91551 1.43902 1.58941 1.19201 1.09219 1.20799 0.93878 0.98908 0.84833 1.19214 1.19951 1.07512 0.91821 0.91376 1.24970 0.98014 1.00088 0.96300 1.70078 1.41886 1.36821 1.06133 0.86274 0.78290 0.83823 0.78410 1.21506 1.21779 1.20436 1.23007 0.99841 0.84823 0.97193 1.83425 1.57564 1.01554 1.06589 0.92347 0.92451 0.92001 0.90411 0.89963 0.84351 0.83660 0.91504 0.89321 0.91762 0.91179 0.91305 0.92389 0.94965 0.93974 0.98255 0.93750 0.89394 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.06 -0.56 6.36 -27.88 -0.18 -0.73 16 3 C -0.21 -2.59 5.53 -35.86 -0.20 -2.79 16 4 C -0.15 -1.88 9.99 -41.41 -0.41 -2.30 16 5 C -0.06 -0.88 10.21 -40.44 -0.41 -1.30 16 6 C -0.27 -4.14 5.63 -36.79 -0.21 -4.35 16 7 C 0.59 10.16 7.55 -12.90 -0.10 10.06 16 8 O -0.54 -10.47 16.49 5.19 0.09 -10.38 16 9 N -0.60 -9.71 2.97 -174.08 -0.52 -10.23 16 10 C 0.11 1.65 6.45 -3.48 -0.02 1.63 16 11 C -0.13 -1.88 6.10 -26.38 -0.16 -2.04 16 12 C -0.13 -2.31 5.14 -26.69 -0.14 -2.45 16 13 C 0.17 3.36 2.74 -67.81 -0.19 3.18 16 14 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 15 N -0.59 -13.91 2.81 -173.35 -0.49 -14.39 16 16 C 0.16 3.70 8.03 59.85 0.48 4.18 16 17 C -0.26 -6.72 9.59 -15.06 -0.14 -6.87 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 20 N -0.90 -25.45 10.76 55.49 0.60 -24.86 16 21 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.08 1.31 5.22 -3.71 -0.02 1.29 16 26 S 0.24 3.30 19.54 -107.50 -2.10 1.20 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 33 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.28 7.02 -51.93 -0.36 0.91 16 36 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 40 H 0.03 0.81 7.36 -51.93 -0.38 0.43 16 41 H 0.04 1.05 7.33 -51.93 -0.38 0.67 16 42 H 0.00 -0.02 6.36 -51.93 -0.33 -0.35 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.09 1.53 3.71 -25.98 -0.10 1.43 16 45 H 0.07 1.20 6.51 -51.93 -0.34 0.86 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -29.97 366.39 -10.24 -40.22 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.90 Total: -0.04 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.42 Total: -3.30 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.41 Total: -49.48 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.10 Total: 1.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.97 -10.24 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027480837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.949 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds