Wall clock time and date at job start Tue Mar 31 2020 13:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47177 * 2 1 4 4 C 1.33815 * 124.52402 * 89.98665 * 3 2 1 5 5 C 1.37470 * 115.10427 * 180.02562 * 4 3 2 6 6 C 1.36646 * 113.29507 * 359.97438 * 5 4 3 7 7 C 1.46582 * 125.45802 * 180.02562 * 6 5 4 8 8 O 1.21702 * 119.99857 * 318.76587 * 7 6 5 9 9 N 1.34771 * 119.99978 * 138.76598 * 7 6 5 10 10 C 1.46930 * 120.63051 * 183.78687 * 9 7 6 11 11 C 1.53628 * 108.54163 * 126.37243 * 10 9 7 12 12 C 1.53042 * 109.24685 * 54.85271 * 11 10 9 13 13 C 1.53044 * 109.53911 * 298.51765 * 12 11 10 14 14 H 1.09004 * 109.49374 * 301.41137 * 13 12 11 15 15 N 1.46497 * 109.49440 * 181.31337 * 13 12 11 16 16 C 1.46501 * 120.00175 * 300.15397 * 15 13 12 17 17 C 1.36940 * 119.99645 * 120.16434 * 15 13 12 18 18 H 1.07991 * 120.00514 * 22.30898 * 17 15 13 19 19 C 1.38817 * 119.99627 * 202.30668 * 17 15 13 20 20 N 1.31623 * 119.99708 * 14.58954 * 19 17 15 21 21 Si 1.86791 * 120.00145 * 194.58531 * 19 17 15 22 22 H 1.48494 * 109.47392 * 94.96673 * 21 19 17 23 23 H 1.48502 * 109.47424 * 214.97294 * 21 19 17 24 24 H 1.48503 * 109.47231 * 334.97032 * 21 19 17 25 25 C 1.46927 * 120.63116 * 4.06741 * 9 7 6 26 26 S 1.70619 * 124.52226 * 270.02351 * 3 2 1 27 27 H 1.09001 * 109.46595 * 299.99885 * 1 2 3 28 28 H 1.08996 * 109.47131 * 59.99808 * 1 2 3 29 29 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47094 * 240.00022 * 2 1 3 31 31 H 1.09003 * 109.47455 * 119.99963 * 2 1 3 32 32 H 1.08004 * 122.44784 * 0.03563 * 4 3 2 33 33 H 1.08001 * 123.35231 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.58811 * 246.20228 * 10 9 7 35 35 H 1.08990 * 109.58499 * 6.63182 * 10 9 7 36 36 H 1.09008 * 109.63312 * 294.86628 * 11 10 9 37 37 H 1.08994 * 109.43388 * 174.73147 * 11 10 9 38 38 H 1.08992 * 109.46269 * 178.49196 * 12 11 10 39 39 H 1.09001 * 109.45636 * 58.53236 * 12 11 10 40 40 H 1.09002 * 109.46442 * 95.00310 * 16 15 13 41 41 H 1.08993 * 109.47203 * 215.00456 * 16 15 13 42 42 H 1.08998 * 109.47008 * 335.00807 * 16 15 13 43 43 H 0.97002 * 119.99579 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58904 * 353.37440 * 25 9 7 45 45 H 1.09004 * 109.58819 * 113.65785 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2849 2.1359 1.1025 5 6 2.7365 3.4147 0.8775 6 6 2.8461 3.7235 -0.4491 7 6 3.3007 5.0085 -0.9883 8 8 2.9313 6.0485 -0.4753 9 7 4.1275 5.0384 -2.0521 10 6 4.6576 6.3140 -2.5527 11 6 6.1890 6.2131 -2.6222 12 6 6.5767 4.9971 -3.4666 13 6 6.0398 3.7243 -2.8078 14 1 6.4468 3.6366 -1.8005 15 7 6.4382 2.5583 -3.6002 16 6 6.0137 2.4425 -4.9976 17 6 7.2072 1.5764 -3.0345 18 1 7.2255 1.4558 -1.9616 19 6 7.9631 0.7362 -3.8405 20 7 8.1739 1.0484 -5.1017 21 14 8.6813 -0.8373 -3.1352 22 1 7.7652 -1.9707 -3.4200 23 1 10.0034 -1.1007 -3.7580 24 1 8.8464 -0.6913 -1.6666 25 6 4.5112 3.7964 -2.7371 26 16 2.3541 2.3326 -1.4057 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1444 1.7375 2.0965 33 1 2.9804 4.1064 1.6703 34 1 4.2562 6.5116 -3.5467 35 1 4.3734 7.1189 -1.8750 36 1 6.5947 6.1019 -1.6165 37 1 6.5916 7.1169 -3.0794 38 1 7.6624 4.9375 -3.5405 39 1 6.1499 5.0971 -4.4646 40 1 6.7986 2.8274 -5.6487 41 1 5.8259 1.3954 -5.2347 42 1 5.1010 3.0187 -5.1490 43 1 8.7025 0.4615 -5.6647 44 1 4.1303 2.9398 -2.1811 45 1 4.0961 3.7917 -3.7449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027480837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:40 Heat of formation + Delta-G solvation = 2.467349 kcal Electronic energy + Delta-G solvation = -25811.643436 eV Core-core repulsion = 22341.701616 eV Total energy + Delta-G solvation = -3469.941819 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33874 -39.30230 -38.59013 -36.63090 -34.76274 -33.90985 -33.17924 -30.54527 -29.69082 -28.01625 -26.94530 -25.67177 -25.25103 -23.41844 -23.09865 -21.86233 -20.73628 -19.41270 -19.12934 -18.64746 -17.28424 -17.13310 -16.95410 -16.24182 -16.00358 -15.74407 -15.41563 -15.15590 -15.01329 -14.78091 -14.47785 -14.39110 -14.09536 -13.95231 -13.71994 -13.65798 -13.11219 -12.89407 -12.85234 -12.75745 -12.53934 -12.40557 -12.30107 -12.18663 -12.06369 -11.96299 -11.90679 -11.67738 -11.56303 -11.44784 -11.12287 -10.63700 -9.89078 -9.57163 -9.36145 -8.74135 -7.80737 -5.28357 -0.41713 0.40590 0.91716 1.43816 1.47210 1.48708 1.56905 1.77160 2.08943 2.52166 3.32107 3.36395 3.71604 3.77026 3.87566 3.98130 4.08616 4.14376 4.20738 4.32901 4.36385 4.41276 4.48252 4.53381 4.64214 4.74373 4.79666 4.85661 4.90101 4.91781 4.96197 5.03995 5.06850 5.12811 5.23029 5.28003 5.33677 5.41733 5.44116 5.45660 5.47142 5.67431 5.76313 6.19734 6.35441 6.94020 7.17087 7.87646 8.30878 9.21711 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.005425 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.252523 B = 5160.366721 C = 7296.564993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.201 4.201 4 C -0.158 4.158 5 C -0.060 4.060 6 C -0.301 4.301 7 C 0.591 3.409 8 O -0.570 6.570 9 N -0.598 5.598 10 C 0.112 3.888 11 C -0.119 4.119 12 C -0.124 4.124 13 C 0.169 3.831 14 H 0.048 0.952 15 N -0.603 5.603 16 C 0.177 3.823 17 C -0.259 4.259 18 H 0.065 0.935 19 C -0.045 4.045 20 N -0.933 5.933 21 Si 0.960 3.040 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.271 1.271 25 C 0.090 3.910 26 S 0.226 5.774 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.167 0.833 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.006 0.994 41 H 0.016 0.984 42 H 0.033 0.967 43 H 0.248 0.752 44 H 0.089 0.911 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.724 2.480 8.171 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.320 4.320 4 C -0.188 4.188 5 C -0.094 4.094 6 C -0.421 4.421 7 C 0.379 3.621 8 O -0.452 6.452 9 N -0.330 5.330 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.067 0.933 15 N -0.326 5.326 16 C 0.032 3.968 17 C -0.390 4.390 18 H 0.083 0.917 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.789 3.211 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.196 1.196 25 C -0.035 4.035 26 S 0.495 5.505 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.024 0.976 41 H 0.035 0.965 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.930 2.625 6.737 15.694 hybrid contribution 1.039 -0.615 1.496 1.923 sum -12.890 2.009 8.233 15.427 Atomic orbital electron populations 1.21780 0.93015 1.03095 1.02294 1.20286 0.97127 0.87993 1.04394 1.24845 1.05902 1.03220 0.98039 1.20083 1.04711 0.93342 1.00629 1.20834 0.97001 0.97217 0.94304 1.24471 1.18781 0.99652 0.99213 1.17268 0.78064 0.87425 0.79318 1.90751 1.58956 1.34415 1.61066 1.48102 1.45961 1.09098 1.29811 1.21883 0.93868 0.84683 1.00483 1.21925 0.94603 0.98859 1.00384 1.21968 1.00317 0.94689 0.99366 1.20643 0.91642 0.87090 0.94506 0.93326 1.44047 1.58815 1.20181 1.09532 1.20527 0.94335 0.97645 0.84266 1.19453 1.19556 1.08120 0.91823 0.91677 1.25632 0.98971 1.02771 0.96707 1.70225 1.42946 1.37639 1.07148 0.85356 0.77163 0.80576 0.78022 1.21198 1.22347 1.19604 1.22718 0.97583 0.85571 0.97638 1.83374 1.58023 1.01451 1.07628 0.91976 0.93084 0.90295 0.90597 0.88329 0.81589 0.82981 0.89644 0.89055 0.92415 0.88269 0.93600 0.92024 0.97587 0.96479 0.94874 0.94304 0.89397 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 71.98 0.71 -1.33 16 2 C -0.06 -1.02 6.36 29.85 0.19 -0.83 16 3 C -0.20 -4.56 5.53 24.68 0.14 -4.43 16 4 C -0.16 -3.52 9.99 21.08 0.21 -3.31 16 5 C -0.06 -1.59 10.21 21.72 0.22 -1.37 16 6 C -0.30 -9.16 5.63 24.08 0.14 -9.03 16 7 C 0.59 19.96 7.55 86.42 0.65 20.61 16 8 O -0.57 -21.72 16.49 -4.35 -0.07 -21.80 16 9 N -0.60 -18.83 2.97 -822.88 -2.44 -21.27 16 10 C 0.11 3.02 6.45 86.51 0.56 3.58 16 11 C -0.12 -3.20 6.10 30.82 0.19 -3.02 16 12 C -0.12 -4.24 5.14 30.62 0.16 -4.09 16 13 C 0.17 6.61 2.74 45.07 0.12 6.74 16 14 H 0.05 2.05 7.86 -2.38 -0.02 2.03 16 15 N -0.60 -28.57 2.81 -702.35 -1.98 -30.55 16 16 C 0.18 8.22 8.03 127.77 1.03 9.24 16 17 C -0.26 -13.75 9.59 84.03 0.81 -12.95 16 18 H 0.07 3.43 7.83 -2.92 -0.02 3.40 16 19 C -0.05 -2.46 5.07 84.86 0.43 -2.03 16 20 N -0.93 -53.49 10.76 21.65 0.23 -53.25 16 21 Si 0.96 44.00 29.58 68.60 2.03 46.03 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 C 0.09 3.02 5.22 86.36 0.45 3.47 16 26 S 0.23 6.03 19.54 -56.49 -1.10 4.93 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.48 7.02 -2.39 -0.02 2.46 16 36 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.06 2.07 7.71 -2.39 -0.02 2.05 16 40 H 0.01 0.30 7.36 -2.39 -0.02 0.28 16 41 H 0.02 0.85 7.33 -2.39 -0.02 0.83 16 42 H 0.03 1.28 6.36 -2.39 -0.02 1.27 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.09 3.01 3.71 -18.89 -0.07 2.94 16 45 H 0.08 2.48 6.51 -2.39 -0.02 2.46 16 Total: -1.00 -64.74 366.39 3.58 -61.15 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.92 Total: 13.49 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 6.00 Total: 1.27 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -4.18 Total: -105.08 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -1.10 Total: 4.93 kcal Total: -64.74 3.58 -61.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027480837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.620 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds