Wall clock time and date at job start Tue Mar 31 2020 13:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47277 * 2 1 4 4 C 1.37469 * 123.35078 * 265.20202 * 3 2 1 5 5 C 1.33819 * 115.10079 * 180.27009 * 4 3 2 6 6 S 1.70610 * 110.95592 * 359.75090 * 5 4 3 7 7 C 1.36643 * 123.35302 * 84.99907 * 3 2 1 8 8 C 1.46588 * 125.45980 * 0.02799 * 7 3 2 9 9 O 1.21701 * 120.00247 * 49.78159 * 8 7 3 10 10 N 1.34778 * 119.99728 * 229.78805 * 8 7 3 11 11 C 1.46927 * 120.62832 * 176.02219 * 10 8 7 12 12 C 1.53188 * 108.77545 * 233.60933 * 11 10 8 13 13 C 1.53040 * 109.31583 * 305.36472 * 12 11 10 14 14 C 1.53043 * 109.53407 * 61.36867 * 13 12 11 15 15 H 1.08995 * 109.49685 * 58.61987 * 14 13 12 16 16 N 1.46504 * 109.49608 * 178.68281 * 14 13 12 17 17 C 1.46499 * 120.00054 * 60.00093 * 16 14 13 18 18 C 1.36933 * 119.99990 * 240.00041 * 16 14 13 19 19 H 1.07998 * 120.00351 * 22.86379 * 18 16 14 20 20 C 1.38810 * 120.00003 * 202.87372 * 18 16 14 21 21 N 1.31619 * 120.00104 * 12.67020 * 20 18 16 22 22 Si 1.86802 * 120.00100 * 192.68254 * 20 18 16 23 23 H 1.48497 * 109.47242 * 59.99151 * 22 20 18 24 24 H 1.48503 * 109.47285 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46685 * 299.99165 * 22 20 18 26 26 C 1.46923 * 120.63145 * 356.02624 * 10 8 7 27 27 H 1.09005 * 109.47056 * 300.00196 * 1 2 3 28 28 H 1.09001 * 109.47396 * 59.99422 * 1 2 3 29 29 H 1.08994 * 109.47639 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47449 * 239.99944 * 2 1 3 31 31 H 1.09006 * 109.47471 * 119.99853 * 2 1 3 32 32 H 1.07998 * 122.45118 * 359.97438 * 4 3 2 33 33 H 1.08001 * 124.52173 * 179.76668 * 5 4 3 34 34 H 1.09004 * 109.58140 * 113.82576 * 11 10 8 35 35 H 1.08998 * 109.70562 * 353.47460 * 11 10 8 36 36 H 1.09005 * 109.49393 * 185.41842 * 12 11 10 37 37 H 1.08999 * 109.52302 * 65.34184 * 12 11 10 38 38 H 1.08996 * 109.45933 * 301.35070 * 13 12 11 39 39 H 1.09000 * 109.45946 * 181.38314 * 13 12 11 40 40 H 1.09004 * 109.47058 * 87.05747 * 17 16 14 41 41 H 1.08994 * 109.47467 * 207.06092 * 17 16 14 42 42 H 1.09003 * 109.46881 * 327.06179 * 17 16 14 43 43 H 0.97004 * 120.00305 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.58785 * 6.60403 * 26 10 8 45 45 H 1.08997 * 109.58891 * 246.17555 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3748 2.1013 -1.1443 5 6 2.8065 3.3534 -0.9525 6 16 2.7993 3.7540 0.7059 7 6 2.1889 2.1623 1.1370 8 6 1.9005 1.7023 2.4987 9 8 2.3457 0.6390 2.8889 10 7 1.1423 2.4570 3.3184 11 6 0.7723 1.9707 4.6546 12 6 -0.7503 2.0497 4.8039 13 6 -1.2150 3.4765 4.5034 14 6 -0.8515 3.8402 3.0620 15 1 -1.3216 3.1329 2.3788 16 7 -1.3246 5.1947 2.7653 17 6 -0.8346 6.3302 3.5506 18 6 -2.2248 5.3993 1.7539 19 1 -2.8594 4.5902 1.4238 20 6 -2.3216 6.6467 1.1527 21 7 -1.3952 7.5559 1.3705 22 14 -3.7669 7.0352 0.0348 23 1 -5.0331 6.9063 0.7999 24 1 -3.6375 8.4231 -0.4774 25 1 -3.7792 6.0851 -1.1064 26 6 0.6700 3.7816 2.8929 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3053 1.6564 -2.1259 33 1 3.1177 4.0212 -1.7421 34 1 1.2467 2.5924 5.4140 35 1 1.0980 0.9372 4.7728 36 1 -1.0301 1.7830 5.8231 37 1 -1.2212 1.3587 4.1047 38 1 -0.7251 4.1696 5.1873 39 1 -2.2953 3.5414 4.6329 40 1 0.0901 6.7040 3.1110 41 1 -1.5833 7.1223 3.5502 42 1 -0.6460 6.0090 4.5750 43 1 -1.4626 8.4275 0.9501 44 1 0.9277 3.9425 1.8461 45 1 1.1359 4.5509 3.5086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027692644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:20 Heat of formation + Delta-G solvation = 17.630809 kcal Electronic energy + Delta-G solvation = -26471.687768 eV Core-core repulsion = 23002.403485 eV Total energy + Delta-G solvation = -3469.284282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06565 -38.24708 -37.14934 -34.92599 -32.69464 -32.55929 -31.50512 -29.29277 -28.58918 -26.05025 -25.74605 -24.50833 -23.53468 -22.26743 -21.84607 -20.35903 -19.19561 -18.06548 -17.75621 -16.72588 -16.20395 -15.68696 -15.17472 -14.82466 -14.64948 -14.10526 -13.95616 -13.80061 -13.67259 -13.58165 -13.14021 -12.91379 -12.70313 -12.63238 -12.39136 -12.03474 -11.92784 -11.70436 -11.39473 -11.17867 -11.05338 -10.92402 -10.82142 -10.62755 -10.56098 -10.41275 -10.37829 -10.28731 -9.88412 -9.83293 -9.68723 -8.62708 -8.58156 -8.31315 -8.13473 -6.80218 -5.79431 -3.23557 0.81270 1.60634 2.08712 2.61740 3.03953 3.35386 3.38870 3.41076 3.43014 4.43327 4.74086 4.91189 5.14846 5.21232 5.23939 5.26985 5.34641 5.40637 5.47540 5.52296 5.54451 5.66764 5.68903 5.77859 5.87685 5.90074 6.03067 6.05831 6.12602 6.14077 6.17635 6.33183 6.34969 6.36631 6.51644 6.54523 6.70428 6.77361 6.82713 6.92696 7.33869 7.60641 7.63568 7.76804 8.31594 8.36470 9.18361 9.80594 10.29708 11.26655 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.005479 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.817394 B = 5108.774517 C = 6153.654437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.037 4.037 4 C -0.144 4.144 5 C -0.243 4.243 6 S 0.233 5.767 7 C -0.264 4.264 8 C 0.595 3.405 9 O -0.543 6.543 10 N -0.599 5.599 11 C 0.114 3.886 12 C -0.130 4.130 13 C -0.134 4.134 14 C 0.171 3.829 15 H 0.065 0.935 16 N -0.589 5.589 17 C 0.160 3.840 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.906 5.906 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.079 3.921 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.166 0.834 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.057 0.943 42 H -0.003 1.003 43 H 0.253 0.747 44 H 0.091 0.909 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -9.947 0.483 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.051 4.051 4 C -0.176 4.176 5 C -0.381 4.381 6 S 0.503 5.497 7 C -0.384 4.384 8 C 0.382 3.618 9 O -0.422 6.422 10 N -0.331 5.331 11 C -0.008 4.008 12 C -0.169 4.169 13 C -0.173 4.173 14 C 0.061 3.939 15 H 0.083 0.917 16 N -0.311 5.311 17 C 0.015 3.985 18 C -0.385 4.385 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.046 4.046 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.076 0.924 42 H 0.015 0.985 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.537 -8.916 1.435 11.763 hybrid contribution -1.125 -0.575 -1.741 2.152 sum 6.412 -9.492 -0.307 11.459 Atomic orbital electron populations 1.21699 0.94447 1.01536 1.02421 1.20358 0.96196 0.91137 1.03484 1.19270 0.98307 0.97055 0.90513 1.19773 1.04229 0.94289 0.99309 1.25309 1.08851 1.01261 1.02676 1.83408 1.58452 1.09880 0.97999 1.24313 1.16832 0.99711 0.97548 1.17010 0.78100 0.83648 0.83031 1.90749 1.52873 1.23105 1.75521 1.48187 1.50195 1.18994 1.15722 1.21591 0.95464 1.00775 0.82945 1.21901 0.94852 0.98563 1.01554 1.22083 1.01391 0.94565 0.99305 1.20603 0.90333 0.88920 0.94016 0.91692 1.43909 1.49703 1.00475 1.37023 1.20799 0.98876 0.89625 0.89188 1.19172 1.11315 0.96916 1.11121 0.91512 1.24985 0.97945 0.97825 0.98548 1.70051 1.32626 1.05893 1.46450 0.86366 0.82528 0.77219 0.80616 1.21042 1.21603 1.20941 1.23003 0.98485 0.81555 1.01509 0.92591 0.92479 0.92409 0.90981 0.89560 0.84269 0.81658 0.91655 0.89369 0.91172 0.91791 0.92188 0.91626 0.96313 0.92413 0.98487 0.93634 0.89146 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 37.15 0.37 -1.50 16 2 C -0.07 -0.97 5.94 -27.89 -0.17 -1.13 16 3 C -0.04 -0.55 5.16 -105.48 -0.54 -1.09 16 4 C -0.14 -1.95 9.96 -41.41 -0.41 -2.36 16 5 C -0.24 -3.28 10.92 29.18 0.32 -2.96 16 6 S 0.23 3.51 20.27 -107.50 -2.18 1.33 16 7 C -0.26 -4.35 5.32 -36.79 -0.20 -4.55 16 8 C 0.60 10.41 7.17 -12.89 -0.09 10.32 16 9 O -0.54 -10.37 15.15 5.19 0.08 -10.29 16 10 N -0.60 -9.91 2.97 -174.34 -0.52 -10.43 16 11 C 0.11 1.63 6.42 -3.71 -0.02 1.61 16 12 C -0.13 -1.77 6.08 -26.61 -0.16 -1.93 16 13 C -0.13 -2.20 5.11 -26.69 -0.14 -2.34 16 14 C 0.17 3.34 2.75 -67.80 -0.19 3.16 16 15 H 0.06 1.35 7.86 -51.93 -0.41 0.95 16 16 N -0.59 -13.90 2.81 -173.34 -0.49 -14.39 16 17 C 0.16 3.70 7.97 59.85 0.48 4.18 16 18 C -0.26 -6.73 9.59 -15.06 -0.14 -6.87 16 19 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 20 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 21 N -0.91 -25.20 10.73 55.49 0.60 -24.60 16 22 Si 0.90 21.27 29.57 -169.99 -5.03 16.24 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.08 1.44 5.30 -3.71 -0.02 1.42 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.09 1.28 6.68 -51.93 -0.35 0.93 16 32 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.17 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.26 7.03 -51.93 -0.37 0.89 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.46 7.79 -51.93 -0.40 0.05 16 41 H 0.06 1.47 6.77 -51.93 -0.35 1.12 16 42 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.09 1.75 4.28 -36.41 -0.16 1.59 16 45 H 0.07 1.23 7.51 -51.93 -0.39 0.84 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -29.39 363.95 -9.94 -39.33 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.88 Total: 1.32 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.01 Total: -3.99 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.41 Total: -49.42 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.18 Total: 1.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.39 -9.94 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027692644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.960 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds