Wall clock time and date at job start Tue Mar 31 2020 13:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47277 * 2 1 4 4 C 1.37469 * 123.35078 * 265.20202 * 3 2 1 5 5 C 1.33819 * 115.10079 * 180.27009 * 4 3 2 6 6 S 1.70610 * 110.95592 * 359.75090 * 5 4 3 7 7 C 1.36643 * 123.35302 * 84.99907 * 3 2 1 8 8 C 1.46588 * 125.45980 * 0.02799 * 7 3 2 9 9 O 1.21701 * 120.00247 * 49.78159 * 8 7 3 10 10 N 1.34778 * 119.99728 * 229.78805 * 8 7 3 11 11 C 1.46927 * 120.62832 * 176.02219 * 10 8 7 12 12 C 1.53188 * 108.77545 * 233.60933 * 11 10 8 13 13 C 1.53040 * 109.31583 * 305.36472 * 12 11 10 14 14 C 1.53043 * 109.53407 * 61.36867 * 13 12 11 15 15 H 1.08995 * 109.49685 * 58.61987 * 14 13 12 16 16 N 1.46504 * 109.49608 * 178.68281 * 14 13 12 17 17 C 1.46499 * 120.00054 * 60.00093 * 16 14 13 18 18 C 1.36933 * 119.99990 * 240.00041 * 16 14 13 19 19 H 1.07998 * 120.00351 * 22.86379 * 18 16 14 20 20 C 1.38810 * 120.00003 * 202.87372 * 18 16 14 21 21 N 1.31619 * 120.00104 * 12.67020 * 20 18 16 22 22 Si 1.86802 * 120.00100 * 192.68254 * 20 18 16 23 23 H 1.48497 * 109.47242 * 59.99151 * 22 20 18 24 24 H 1.48503 * 109.47285 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46685 * 299.99165 * 22 20 18 26 26 C 1.46923 * 120.63145 * 356.02624 * 10 8 7 27 27 H 1.09005 * 109.47056 * 300.00196 * 1 2 3 28 28 H 1.09001 * 109.47396 * 59.99422 * 1 2 3 29 29 H 1.08994 * 109.47639 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47449 * 239.99944 * 2 1 3 31 31 H 1.09006 * 109.47471 * 119.99853 * 2 1 3 32 32 H 1.07998 * 122.45118 * 359.97438 * 4 3 2 33 33 H 1.08001 * 124.52173 * 179.76668 * 5 4 3 34 34 H 1.09004 * 109.58140 * 113.82576 * 11 10 8 35 35 H 1.08998 * 109.70562 * 353.47460 * 11 10 8 36 36 H 1.09005 * 109.49393 * 185.41842 * 12 11 10 37 37 H 1.08999 * 109.52302 * 65.34184 * 12 11 10 38 38 H 1.08996 * 109.45933 * 301.35070 * 13 12 11 39 39 H 1.09000 * 109.45946 * 181.38314 * 13 12 11 40 40 H 1.09004 * 109.47058 * 87.05747 * 17 16 14 41 41 H 1.08994 * 109.47467 * 207.06092 * 17 16 14 42 42 H 1.09003 * 109.46881 * 327.06179 * 17 16 14 43 43 H 0.97004 * 120.00305 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.58785 * 6.60403 * 26 10 8 45 45 H 1.08997 * 109.58891 * 246.17555 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3748 2.1013 -1.1443 5 6 2.8065 3.3534 -0.9525 6 16 2.7993 3.7540 0.7059 7 6 2.1889 2.1623 1.1370 8 6 1.9005 1.7023 2.4987 9 8 2.3457 0.6390 2.8889 10 7 1.1423 2.4570 3.3184 11 6 0.7723 1.9707 4.6546 12 6 -0.7503 2.0497 4.8039 13 6 -1.2150 3.4765 4.5034 14 6 -0.8515 3.8402 3.0620 15 1 -1.3216 3.1329 2.3788 16 7 -1.3246 5.1947 2.7653 17 6 -0.8346 6.3302 3.5506 18 6 -2.2248 5.3993 1.7539 19 1 -2.8594 4.5902 1.4238 20 6 -2.3216 6.6467 1.1527 21 7 -1.3952 7.5559 1.3705 22 14 -3.7669 7.0352 0.0348 23 1 -5.0331 6.9063 0.7999 24 1 -3.6375 8.4231 -0.4774 25 1 -3.7792 6.0851 -1.1064 26 6 0.6700 3.7816 2.8929 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3053 1.6564 -2.1259 33 1 3.1177 4.0212 -1.7421 34 1 1.2467 2.5924 5.4140 35 1 1.0980 0.9372 4.7728 36 1 -1.0301 1.7830 5.8231 37 1 -1.2212 1.3587 4.1047 38 1 -0.7251 4.1696 5.1873 39 1 -2.2953 3.5414 4.6329 40 1 0.0901 6.7040 3.1110 41 1 -1.5833 7.1223 3.5502 42 1 -0.6460 6.0090 4.5750 43 1 -1.4626 8.4275 0.9501 44 1 0.9277 3.9425 1.8461 45 1 1.1359 4.5509 3.5086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027692644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:19 Heat of formation + Delta-G solvation = 2.757701 kcal Electronic energy + Delta-G solvation = -26472.332714 eV Core-core repulsion = 23002.403485 eV Total energy + Delta-G solvation = -3469.929229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39513 -39.49287 -38.55626 -36.61531 -34.00637 -33.75365 -33.20167 -30.66847 -30.04564 -28.00244 -26.96277 -25.75363 -25.23450 -23.36456 -23.17381 -21.79479 -20.58827 -19.26764 -19.13621 -18.59032 -17.52271 -16.96333 -16.89554 -16.12128 -15.97392 -15.72709 -15.28438 -15.16548 -14.95093 -14.78487 -14.55609 -14.38535 -14.07063 -13.98520 -13.68877 -13.57211 -13.18014 -13.05558 -12.80930 -12.73451 -12.48946 -12.41979 -12.22288 -12.17743 -12.10765 -12.02281 -11.77587 -11.65169 -11.58986 -11.44535 -11.05385 -10.58088 -9.85480 -9.64227 -9.30953 -8.71822 -7.82199 -5.27787 -0.34971 0.43239 0.96728 1.47428 1.47746 1.49250 1.55172 1.76368 2.09157 2.52122 3.32260 3.39981 3.76126 3.86700 3.92023 4.00440 4.11946 4.12826 4.23844 4.31193 4.35455 4.41777 4.47384 4.57918 4.66008 4.74059 4.77942 4.84899 4.85580 4.97851 5.00478 5.02928 5.07058 5.08318 5.26977 5.29582 5.38539 5.42251 5.46021 5.48187 5.55661 5.63869 5.74600 6.23278 6.36941 6.98573 7.17862 7.88335 8.32184 9.21677 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.005479 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.817394 B = 5108.774517 C = 6153.654437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.038 4.038 4 C -0.149 4.149 5 C -0.235 4.235 6 S 0.206 5.794 7 C -0.296 4.296 8 C 0.595 3.405 9 O -0.564 6.564 10 N -0.598 5.598 11 C 0.110 3.890 12 C -0.118 4.118 13 C -0.125 4.125 14 C 0.170 3.830 15 H 0.047 0.953 16 N -0.602 5.602 17 C 0.176 3.824 18 C -0.263 4.263 19 H 0.064 0.936 20 C -0.042 4.042 21 N -0.931 5.931 22 Si 0.960 3.040 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.279 1.279 26 C 0.094 3.906 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.170 0.830 33 H 0.192 0.808 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.059 0.941 40 H -0.001 1.001 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.249 0.751 44 H 0.078 0.922 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -11.182 0.074 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.053 4.053 4 C -0.180 4.180 5 C -0.373 4.373 6 S 0.476 5.524 7 C -0.416 4.416 8 C 0.383 3.617 9 O -0.445 6.445 10 N -0.330 5.330 11 C -0.012 4.012 12 C -0.156 4.156 13 C -0.164 4.164 14 C 0.061 3.939 15 H 0.065 0.935 16 N -0.325 5.325 17 C 0.031 3.969 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.238 4.238 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.205 1.205 26 C -0.031 4.031 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.188 0.812 33 H 0.209 0.791 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.379 -10.183 1.051 12.619 hybrid contribution -1.055 -0.261 -1.630 1.959 sum 6.324 -10.444 -0.579 12.223 Atomic orbital electron populations 1.21660 0.94243 1.02526 1.01186 1.20398 0.96238 0.90296 1.04037 1.19686 0.97252 0.97755 0.90639 1.20091 1.03587 0.94177 1.00103 1.25662 1.07864 1.01727 1.02002 1.83443 1.59047 1.09930 0.99956 1.24381 1.19008 1.00611 0.97627 1.17173 0.77760 0.83314 0.83479 1.90723 1.53806 1.23920 1.76100 1.48190 1.49912 1.18293 1.16555 1.21803 0.96009 1.01227 0.82114 1.21834 0.94135 0.96300 1.03375 1.21944 1.01090 0.96553 0.96794 1.20706 0.91000 0.86498 0.95659 0.93486 1.44046 1.49810 1.01938 1.36670 1.20536 0.96839 0.88952 0.90561 1.19421 1.11717 0.96878 1.11309 0.91805 1.25623 1.00091 0.97880 1.00199 1.70192 1.34033 1.05911 1.47591 0.85464 0.79979 0.76627 0.79094 1.20648 1.21974 1.20473 1.22637 0.97208 0.82316 1.00965 0.95273 0.92142 0.90345 0.88099 0.91248 0.81231 0.79053 0.89962 0.89112 0.87803 0.92386 0.91645 0.92237 0.98319 0.95238 0.95417 0.94195 0.90356 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.89 71.98 0.71 -2.73 16 2 C -0.07 -1.78 5.94 29.85 0.18 -1.60 16 3 C -0.04 -1.10 5.16 -20.42 -0.11 -1.20 16 4 C -0.15 -3.70 9.96 21.08 0.21 -3.49 16 5 C -0.24 -5.97 10.92 66.81 0.73 -5.24 16 6 S 0.21 6.24 20.27 -56.49 -1.14 5.09 16 7 C -0.30 -9.77 5.32 24.08 0.13 -9.64 16 8 C 0.59 20.86 7.17 86.42 0.62 21.48 16 9 O -0.56 -21.58 15.15 -4.35 -0.07 -21.64 16 10 N -0.60 -19.59 2.97 -823.71 -2.45 -22.04 16 11 C 0.11 2.95 6.42 86.36 0.55 3.51 16 12 C -0.12 -2.96 6.08 30.67 0.19 -2.78 16 13 C -0.12 -3.92 5.11 30.62 0.16 -3.76 16 14 C 0.17 6.63 2.75 45.07 0.12 6.75 16 15 H 0.05 1.99 7.86 -2.39 -0.02 1.97 16 16 N -0.60 -28.60 2.81 -702.33 -1.98 -30.58 16 17 C 0.18 8.22 7.97 127.77 1.02 9.24 16 18 C -0.26 -13.97 9.59 84.03 0.81 -13.16 16 19 H 0.06 3.36 7.82 -2.91 -0.02 3.33 16 20 C -0.04 -2.28 5.06 84.86 0.43 -1.85 16 21 N -0.93 -52.72 10.73 21.65 0.23 -52.48 16 22 Si 0.96 43.91 29.57 68.60 2.03 45.93 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.09 3.42 5.30 86.37 0.46 3.88 16 27 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.95 8.12 -2.39 -0.02 1.93 16 31 H 0.07 2.01 6.68 -2.38 -0.02 2.00 16 32 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.09 2.45 7.03 -2.39 -0.02 2.43 16 36 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 2.00 6.73 -2.39 -0.02 1.98 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.00 -0.08 7.79 -2.38 -0.02 -0.09 16 41 H 0.03 1.52 6.77 -2.39 -0.02 1.50 16 42 H 0.03 1.10 6.46 -2.39 -0.02 1.08 16 43 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 44 H 0.08 3.09 4.28 -12.25 -0.05 3.03 16 45 H 0.07 2.38 7.51 -2.39 -0.02 2.37 16 Total: -1.00 -63.88 363.95 3.77 -60.11 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.94 Total: 16.21 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.20 Total: -0.61 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -4.19 Total: -105.10 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.07 Total: -21.64 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.14 Total: 5.09 kcal Total: -63.88 3.77 -60.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027692644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.871 kcal (2) G-P(sol) polarization free energy of solvation -63.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds