Wall clock time and date at job start Tue Mar 31 2020 13:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.50697 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.33822 * 124.52194 * 89.99945 * 4 3 2 6 6 C 1.37479 * 115.09770 * 179.74907 * 5 4 3 7 7 C 1.36643 * 113.29979 * 0.49716 * 6 5 4 8 8 C 1.46581 * 125.46005 * 179.80334 * 7 6 5 9 9 O 1.21701 * 119.99616 * 359.71122 * 8 7 6 10 10 N 1.34779 * 120.00014 * 179.72021 * 8 7 6 11 11 C 1.46498 * 119.99859 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47270 * 174.97255 * 11 10 8 13 13 H 1.08998 * 109.99715 * 58.21654 * 12 11 10 14 14 C 1.54317 * 109.88392 * 179.32174 * 12 11 10 15 15 C 1.55156 * 102.94638 * 141.61137 * 14 12 11 16 16 C 1.54915 * 101.57765 * 324.49442 * 15 14 12 17 17 N 1.47027 * 109.88076 * 297.12948 * 12 11 10 18 18 C 1.36938 * 125.65220 * 61.61828 * 17 12 11 19 19 H 1.08004 * 119.99679 * 326.88407 * 18 17 12 20 20 C 1.38806 * 120.00043 * 146.88221 * 18 17 12 21 21 N 1.31623 * 119.99891 * 161.51288 * 20 18 17 22 22 Si 1.86798 * 120.00190 * 341.51872 * 20 18 17 23 23 H 1.48506 * 109.47017 * 95.38572 * 22 20 18 24 24 H 1.48501 * 109.46920 * 215.38408 * 22 20 18 25 25 H 1.48491 * 109.47167 * 335.38688 * 22 20 18 26 26 S 1.70623 * 124.52512 * 270.02725 * 4 3 2 27 27 H 1.08996 * 109.46471 * 299.99902 * 1 2 3 28 28 H 1.09000 * 109.47105 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47102 * 240.00334 * 2 1 3 31 31 H 1.08993 * 109.47501 * 120.00595 * 2 1 3 32 32 H 1.09002 * 109.46831 * 60.00168 * 3 2 1 33 33 H 1.09000 * 109.47147 * 300.00029 * 3 2 1 34 34 H 1.07998 * 122.44792 * 359.97438 * 5 4 3 35 35 H 1.08003 * 123.34783 * 180.29695 * 6 5 4 36 36 H 0.96994 * 119.99613 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46974 * 54.97235 * 11 10 8 38 38 H 1.09004 * 109.47010 * 294.97219 * 11 10 8 39 39 H 1.09006 * 110.71601 * 259.97109 * 14 12 11 40 40 H 1.08998 * 110.72261 * 23.24583 * 14 12 11 41 41 H 1.08997 * 111.00801 * 82.56275 * 15 14 12 42 42 H 1.08996 * 111.00808 * 206.42631 * 15 14 12 43 43 H 1.08997 * 110.36571 * 155.84695 * 16 15 14 44 44 H 1.08993 * 110.36850 * 278.06105 * 16 15 14 45 45 H 0.97004 * 120.00298 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3049 1.4427 -1.1035 6 6 5.6613 1.4481 -0.8790 7 6 5.9895 1.4415 0.4474 8 6 7.3528 1.4409 0.9860 9 8 8.3060 1.4413 0.2293 10 7 7.5507 1.4398 2.3192 11 6 8.9132 1.4386 2.8575 12 6 8.8596 1.5639 4.3814 13 1 8.2792 0.7431 4.8027 14 6 10.2901 1.5465 4.9600 15 6 10.2127 2.5856 6.1096 16 6 9.2426 3.6364 5.5141 17 7 8.2526 2.8494 4.7564 18 6 6.9790 3.2497 4.4519 19 1 6.5213 2.9358 3.5253 20 6 6.2762 4.0589 5.3339 21 7 5.2296 4.7373 4.9133 22 14 6.8158 4.1853 7.1178 23 1 7.6870 5.3758 7.2882 24 1 5.6201 4.3181 7.9884 25 1 7.5693 2.9626 7.4948 26 16 4.5146 1.4416 1.4047 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8820 1.4424 -2.0973 35 1 6.3943 1.4536 -1.6721 36 1 6.7909 1.4397 2.9222 37 1 9.4682 2.2802 2.4430 38 1 9.4100 0.5069 2.5867 39 1 10.5367 0.5586 5.3492 40 1 11.0144 1.8575 4.2072 41 1 9.7978 2.1387 7.0130 42 1 11.1909 3.0243 6.3063 43 1 8.7528 4.1953 6.3114 44 1 9.7788 4.3146 4.8505 45 1 4.7382 5.3025 5.5298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027909637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:03 Heat of formation + Delta-G solvation = 10.885035 kcal Electronic energy + Delta-G solvation = -25082.306597 eV Core-core repulsion = 21612.729795 eV Total energy + Delta-G solvation = -3469.576801 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.36785 -38.14128 -37.50642 -34.86417 -34.00210 -32.69392 -30.51927 -30.01076 -29.36536 -26.85485 -24.96078 -24.00282 -23.26452 -21.51767 -21.24717 -20.44191 -19.86601 -18.80834 -17.71459 -16.74553 -16.28783 -15.84072 -15.34742 -14.90984 -14.86556 -14.61487 -14.37038 -13.83714 -13.67556 -13.34978 -13.07832 -13.00559 -12.60581 -12.56290 -12.41873 -12.14090 -11.97090 -11.75779 -11.48565 -11.38129 -11.31228 -11.25798 -10.95357 -10.86479 -10.72537 -10.50218 -10.46137 -10.23103 -9.88300 -9.58206 -9.49812 -8.65394 -8.56169 -8.30515 -8.25195 -6.93344 -6.05307 -3.47789 0.79868 1.75980 2.19595 2.63799 3.27713 3.41577 3.46153 3.62391 3.77133 4.46422 4.64459 4.85544 4.87508 4.93200 5.10922 5.26190 5.27343 5.31591 5.39115 5.42396 5.49774 5.53753 5.62075 5.66851 5.71526 5.80416 5.91185 5.92242 5.99852 6.06792 6.08899 6.13871 6.20606 6.23232 6.29472 6.36104 6.42290 6.53753 6.59021 6.81924 6.82861 6.99374 7.78070 8.05335 8.24167 8.66187 8.74792 9.58329 10.16030 11.08680 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.004038 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.082682 B = 6932.336318 C = 8425.013623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.207 4.207 5 C -0.157 4.157 6 C -0.065 4.065 7 C -0.264 4.264 8 C 0.585 3.415 9 O -0.551 6.551 10 N -0.704 5.704 11 C 0.117 3.883 12 C 0.142 3.858 13 H 0.049 0.951 14 C -0.120 4.120 15 C -0.136 4.136 16 C 0.119 3.881 17 N -0.602 5.602 18 C -0.259 4.259 19 H 0.091 0.909 20 C 0.035 3.965 21 N -0.898 5.898 22 Si 0.889 3.111 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.269 1.269 26 S 0.244 5.756 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.032 0.968 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 -9.327 -6.277 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.327 4.327 5 C -0.188 4.188 6 C -0.098 4.098 7 C -0.385 4.385 8 C 0.371 3.629 9 O -0.432 6.432 10 N -0.357 5.357 11 C -0.009 4.009 12 C 0.035 3.965 13 H 0.066 0.934 14 C -0.159 4.159 15 C -0.174 4.174 16 C -0.006 4.006 17 N -0.328 5.328 18 C -0.387 4.387 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.539 5.539 22 Si 0.721 3.279 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.194 1.194 26 S 0.513 5.487 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.979 -9.181 -5.169 10.949 hybrid contribution 0.126 0.446 -0.317 0.562 sum -2.853 -8.735 -5.486 10.702 Atomic orbital electron populations 1.21780 0.95499 1.01727 1.01985 1.21562 0.95772 0.95808 1.02659 1.20218 0.87441 0.97778 1.03564 1.24310 1.01130 1.08672 0.98561 1.19834 0.92579 1.07214 0.99181 1.20614 0.95951 0.98209 0.95070 1.24714 0.97509 1.18064 0.98183 1.16977 0.86610 0.76629 0.82683 1.90750 1.42009 1.52021 1.58448 1.46180 1.10544 1.73051 1.05951 1.21970 0.82693 1.00600 0.95631 1.21283 0.93257 0.90621 0.91334 0.93358 1.22485 0.96341 0.99132 0.97936 1.22777 0.99220 0.97434 0.97965 1.21875 0.90530 0.93609 0.94537 1.44701 1.10619 1.12019 1.65463 1.18655 0.87750 1.30255 1.02025 0.89170 1.25343 0.95464 0.97989 0.97770 1.69819 1.20842 1.28277 1.34949 0.86712 0.76340 0.78154 0.86696 1.21640 1.23228 1.19416 1.83631 0.93537 1.65610 1.05884 0.92483 0.92684 0.92630 0.91662 0.91637 0.90403 0.90094 0.84474 0.83506 0.74948 0.91502 0.92610 0.91322 0.91178 0.91550 0.91497 0.94197 0.95052 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.13 5.92 -26.73 -0.16 -1.28 16 3 C -0.05 -0.55 5.65 -27.88 -0.16 -0.71 16 4 C -0.21 -2.81 5.53 -35.86 -0.20 -3.01 16 5 C -0.16 -2.11 10.00 -41.41 -0.41 -2.52 16 6 C -0.07 -1.02 10.01 -40.43 -0.40 -1.42 16 7 C -0.26 -4.71 6.45 -36.80 -0.24 -4.95 16 8 C 0.59 11.84 7.78 -12.90 -0.10 11.74 16 9 O -0.55 -12.32 16.84 5.19 0.09 -12.24 16 10 N -0.70 -13.92 4.44 -61.65 -0.27 -14.19 16 11 C 0.12 2.17 5.16 -4.04 -0.02 2.15 16 12 C 0.14 2.65 3.33 -66.96 -0.22 2.42 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.12 -1.82 6.48 -24.90 -0.16 -1.98 16 15 C -0.14 -2.23 7.09 -24.58 -0.17 -2.40 16 16 C 0.12 2.48 6.18 -2.52 -0.02 2.47 16 17 N -0.60 -13.64 2.72 -162.58 -0.44 -14.08 16 18 C -0.26 -6.77 9.55 -15.06 -0.14 -6.91 16 19 H 0.09 2.41 5.31 -52.48 -0.28 2.13 16 20 C 0.04 0.97 5.45 -17.43 -0.09 0.88 16 21 N -0.90 -26.02 13.97 55.49 0.78 -25.24 16 22 Si 0.89 21.73 24.74 -169.99 -4.21 17.52 16 23 H -0.29 -7.02 6.88 56.52 0.39 -6.63 16 24 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 25 H -0.27 -6.35 6.98 56.52 0.39 -5.96 16 26 S 0.24 3.93 22.10 -107.50 -2.38 1.56 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16 36 H 0.41 8.28 5.13 -40.82 -0.21 8.07 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.91 3.01 -51.93 -0.16 0.75 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -30.98 369.96 -9.97 -40.94 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.97 Total: 6.53 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.14 Total: -6.37 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.06 Total: -53.52 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.21 Total: 17.52 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.38 Total: 1.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.98 -9.97 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027909637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.829 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds