Wall clock time and date at job start Tue Mar 31 2020 13:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.50697 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.33822 * 124.52194 * 89.99945 * 4 3 2 6 6 C 1.37479 * 115.09770 * 179.74907 * 5 4 3 7 7 C 1.36643 * 113.29979 * 0.49716 * 6 5 4 8 8 C 1.46581 * 125.46005 * 179.80334 * 7 6 5 9 9 O 1.21701 * 119.99616 * 359.71122 * 8 7 6 10 10 N 1.34779 * 120.00014 * 179.72021 * 8 7 6 11 11 C 1.46498 * 119.99859 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47270 * 174.97255 * 11 10 8 13 13 H 1.08998 * 109.99715 * 58.21654 * 12 11 10 14 14 C 1.54317 * 109.88392 * 179.32174 * 12 11 10 15 15 C 1.55156 * 102.94638 * 141.61137 * 14 12 11 16 16 C 1.54915 * 101.57765 * 324.49442 * 15 14 12 17 17 N 1.47027 * 109.88076 * 297.12948 * 12 11 10 18 18 C 1.36938 * 125.65220 * 61.61828 * 17 12 11 19 19 H 1.08004 * 119.99679 * 326.88407 * 18 17 12 20 20 C 1.38806 * 120.00043 * 146.88221 * 18 17 12 21 21 N 1.31623 * 119.99891 * 161.51288 * 20 18 17 22 22 Si 1.86798 * 120.00190 * 341.51872 * 20 18 17 23 23 H 1.48506 * 109.47017 * 95.38572 * 22 20 18 24 24 H 1.48501 * 109.46920 * 215.38408 * 22 20 18 25 25 H 1.48491 * 109.47167 * 335.38688 * 22 20 18 26 26 S 1.70623 * 124.52512 * 270.02725 * 4 3 2 27 27 H 1.08996 * 109.46471 * 299.99902 * 1 2 3 28 28 H 1.09000 * 109.47105 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47102 * 240.00334 * 2 1 3 31 31 H 1.08993 * 109.47501 * 120.00595 * 2 1 3 32 32 H 1.09002 * 109.46831 * 60.00168 * 3 2 1 33 33 H 1.09000 * 109.47147 * 300.00029 * 3 2 1 34 34 H 1.07998 * 122.44792 * 359.97438 * 5 4 3 35 35 H 1.08003 * 123.34783 * 180.29695 * 6 5 4 36 36 H 0.96994 * 119.99613 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46974 * 54.97235 * 11 10 8 38 38 H 1.09004 * 109.47010 * 294.97219 * 11 10 8 39 39 H 1.09006 * 110.71601 * 259.97109 * 14 12 11 40 40 H 1.08998 * 110.72261 * 23.24583 * 14 12 11 41 41 H 1.08997 * 111.00801 * 82.56275 * 15 14 12 42 42 H 1.08996 * 111.00808 * 206.42631 * 15 14 12 43 43 H 1.08997 * 110.36571 * 155.84695 * 16 15 14 44 44 H 1.08993 * 110.36850 * 278.06105 * 16 15 14 45 45 H 0.97004 * 120.00298 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3049 1.4427 -1.1035 6 6 5.6613 1.4481 -0.8790 7 6 5.9895 1.4415 0.4474 8 6 7.3528 1.4409 0.9860 9 8 8.3060 1.4413 0.2293 10 7 7.5507 1.4398 2.3192 11 6 8.9132 1.4386 2.8575 12 6 8.8596 1.5639 4.3814 13 1 8.2792 0.7431 4.8027 14 6 10.2901 1.5465 4.9600 15 6 10.2127 2.5856 6.1096 16 6 9.2426 3.6364 5.5141 17 7 8.2526 2.8494 4.7564 18 6 6.9790 3.2497 4.4519 19 1 6.5213 2.9358 3.5253 20 6 6.2762 4.0589 5.3339 21 7 5.2296 4.7373 4.9133 22 14 6.8158 4.1853 7.1178 23 1 7.6870 5.3758 7.2882 24 1 5.6201 4.3181 7.9884 25 1 7.5693 2.9626 7.4948 26 16 4.5146 1.4416 1.4047 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8820 1.4424 -2.0973 35 1 6.3943 1.4536 -1.6721 36 1 6.7909 1.4397 2.9222 37 1 9.4682 2.2802 2.4430 38 1 9.4100 0.5069 2.5867 39 1 10.5367 0.5586 5.3492 40 1 11.0144 1.8575 4.2072 41 1 9.7978 2.1387 7.0130 42 1 11.1909 3.0243 6.3063 43 1 8.7528 4.1953 6.3114 44 1 9.7788 4.3146 4.8505 45 1 4.7382 5.3025 5.5298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027909637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:02 Heat of formation + Delta-G solvation = -7.134119 kcal Electronic energy + Delta-G solvation = -25083.087966 eV Core-core repulsion = 21612.729795 eV Total energy + Delta-G solvation = -3470.358170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89945 -39.57357 -38.79508 -35.77185 -35.56709 -34.62471 -31.78963 -31.71962 -30.67166 -28.00843 -26.52619 -25.54295 -24.51653 -22.74560 -22.33092 -21.82197 -21.42858 -20.24196 -19.14267 -18.40119 -17.94962 -17.20801 -16.75195 -16.54055 -16.07390 -15.86761 -15.62301 -15.33879 -14.86810 -14.74049 -14.63004 -14.24086 -14.11092 -13.91363 -13.67104 -13.53137 -13.29102 -13.04897 -12.95893 -12.73288 -12.63967 -12.35040 -12.26762 -12.08616 -12.03442 -11.80234 -11.73164 -11.52418 -11.48246 -11.34651 -11.11496 -10.66340 -10.10404 -9.59590 -9.52285 -8.79945 -8.13999 -5.52360 -0.46829 0.50491 0.98524 1.31505 1.40863 1.41577 1.51967 2.14286 2.29668 2.45915 3.06472 3.35407 3.68934 3.83806 3.91174 3.97181 4.07271 4.12864 4.17037 4.30010 4.32221 4.43707 4.45575 4.62444 4.63943 4.71820 4.73638 4.83304 4.84557 4.97098 4.98478 4.99683 5.04668 5.12966 5.17585 5.22782 5.29882 5.30401 5.44856 5.45542 5.47411 5.48157 5.87374 6.20438 6.47744 6.82348 7.11069 7.57038 8.21751 9.03174 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.004038 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.082682 B = 6932.336318 C = 8425.013623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.052 4.052 4 C -0.185 4.185 5 C -0.157 4.157 6 C -0.053 4.053 7 C -0.302 4.302 8 C 0.580 3.420 9 O -0.582 6.582 10 N -0.708 5.708 11 C 0.119 3.881 12 C 0.138 3.862 13 H 0.051 0.949 14 C -0.109 4.109 15 C -0.125 4.125 16 C 0.105 3.895 17 N -0.619 5.619 18 C -0.244 4.244 19 H 0.076 0.924 20 C -0.021 4.021 21 N -0.943 5.943 22 Si 0.945 3.055 23 H -0.290 1.290 24 H -0.314 1.314 25 H -0.254 1.254 26 S 0.205 5.795 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.407 0.593 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.022 0.978 44 H 0.027 0.973 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -10.772 -6.610 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.305 4.305 5 C -0.187 4.187 6 C -0.088 4.088 7 C -0.422 4.422 8 C 0.368 3.632 9 O -0.466 6.466 10 N -0.360 5.360 11 C -0.006 4.006 12 C 0.032 3.968 13 H 0.069 0.931 14 C -0.147 4.147 15 C -0.163 4.163 16 C -0.019 4.019 17 N -0.345 5.345 18 C -0.373 4.373 19 H 0.093 0.907 20 C -0.217 4.217 21 N -0.587 5.587 22 Si 0.777 3.223 23 H -0.218 1.218 24 H -0.244 1.244 25 H -0.178 1.178 26 S 0.474 5.526 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.191 0.809 35 H 0.172 0.828 36 H 0.247 0.753 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.040 0.960 44 H 0.045 0.955 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.427 -10.657 -5.482 12.228 hybrid contribution -0.063 0.875 -0.358 0.948 sum -2.491 -9.782 -5.840 11.662 Atomic orbital electron populations 1.21764 0.94157 1.02439 1.02386 1.21541 0.96883 0.94534 1.02526 1.20390 0.85237 0.99088 1.04437 1.24701 1.02376 1.06384 0.97066 1.20126 0.91408 1.06451 1.00712 1.20933 0.97346 0.96136 0.94341 1.24592 0.96797 1.21620 0.99236 1.17332 0.87415 0.75881 0.82574 1.90708 1.43165 1.53777 1.58932 1.46272 1.10890 1.72826 1.05987 1.21998 0.82180 1.00844 0.95605 1.21516 0.95513 0.88638 0.91145 0.93092 1.22520 0.93845 1.00759 0.97602 1.22750 0.99428 0.96170 0.97916 1.22057 0.90993 0.94886 0.93942 1.44882 1.09911 1.14168 1.65573 1.18780 0.88983 1.28394 1.01182 0.90717 1.25904 0.96060 0.98717 1.01042 1.69938 1.22810 1.30173 1.35817 0.85803 0.75415 0.78491 0.82621 1.21835 1.24351 1.17814 1.83762 0.94108 1.66764 1.07951 0.92808 0.91584 0.91808 0.90923 0.92714 0.90885 0.87797 0.80850 0.82815 0.75345 0.93500 0.90339 0.87869 0.89830 0.91469 0.88207 0.96033 0.95466 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 3 C -0.05 -1.04 5.65 29.85 0.17 -0.87 16 4 C -0.19 -4.82 5.53 24.68 0.14 -4.69 16 5 C -0.16 -3.91 10.00 21.09 0.21 -3.70 16 6 C -0.05 -1.64 10.01 21.72 0.22 -1.42 16 7 C -0.30 -11.04 6.45 24.07 0.16 -10.89 16 8 C 0.58 24.21 7.78 86.42 0.67 24.88 16 9 O -0.58 -26.64 16.84 -4.35 -0.07 -26.72 16 10 N -0.71 -28.71 4.44 -467.18 -2.07 -30.79 16 11 C 0.12 4.37 5.16 86.38 0.45 4.82 16 12 C 0.14 4.93 3.33 45.34 0.15 5.08 16 13 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 14 C -0.11 -2.90 6.48 31.78 0.21 -2.69 16 15 C -0.12 -3.65 7.09 31.99 0.23 -3.42 16 16 C 0.11 4.26 6.18 86.86 0.54 4.80 16 17 N -0.62 -27.82 2.72 -668.27 -1.82 -29.63 16 18 C -0.24 -13.04 9.55 84.03 0.80 -12.23 16 19 H 0.08 4.17 5.31 -2.91 -0.02 4.16 16 20 C -0.02 -1.16 5.45 84.86 0.46 -0.69 16 21 N -0.94 -56.73 13.97 21.65 0.30 -56.42 16 22 Si 0.95 45.67 24.74 68.60 1.70 47.37 16 23 H -0.29 -13.90 6.88 99.48 0.68 -13.22 16 24 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 25 H -0.25 -11.43 6.98 99.48 0.69 -10.73 16 26 S 0.20 6.80 22.10 -56.49 -1.25 5.55 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.41 17.07 5.13 -92.71 -0.48 16.60 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.08 2.04 7.85 -2.39 -0.02 2.02 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 43 H 0.02 0.96 3.01 -2.39 -0.01 0.96 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -69.45 369.96 2.55 -66.90 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.48 Total: 27.88 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.29 Total: -4.15 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -3.59 Total: -116.84 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.07 Total: -26.72 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.70 Total: 47.37 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.25 Total: 5.55 kcal Total: -69.45 2.55 -66.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027909637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.766 kcal (2) G-P(sol) polarization free energy of solvation -69.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds