Wall clock time and date at job start Tue Mar 31 2020 13:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46826 * 2 1 4 4 S 1.70616 * 124.52269 * 269.97362 * 3 2 1 5 5 C 1.75835 * 91.56559 * 180.02562 * 4 3 2 6 6 C 1.46574 * 125.46061 * 179.97438 * 5 4 3 7 7 O 1.21706 * 120.00116 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00145 * 0.03015 * 6 5 4 9 9 C 1.46503 * 120.00011 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46708 * 185.08684 * 9 8 6 11 11 H 1.09004 * 109.87593 * 303.54812 * 10 9 8 12 12 C 1.54324 * 109.88817 * 64.57111 * 10 9 8 13 13 C 1.55152 * 102.94697 * 141.60745 * 12 10 9 14 14 C 1.54920 * 101.58099 * 324.50026 * 13 12 10 15 15 N 1.47031 * 109.87946 * 182.37892 * 10 9 8 16 16 C 1.36934 * 125.64805 * 61.60594 * 15 10 9 17 17 H 1.08000 * 120.00270 * 13.60042 * 16 15 10 18 18 C 1.38808 * 119.99628 * 193.60384 * 16 15 10 19 19 N 1.31611 * 120.00376 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47403 * 59.99746 * 20 18 16 22 22 H 1.48497 * 109.47373 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47374 * 299.99906 * 20 18 16 24 24 C 1.36653 * 109.07926 * 0.24044 * 5 4 3 25 25 C 1.33814 * 124.52183 * 89.99868 * 3 2 1 26 26 C 1.50693 * 122.45132 * 359.95852 * 25 3 2 27 27 H 1.09003 * 109.47176 * 60.00470 * 1 2 3 28 28 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47150 * 299.99749 * 1 2 3 30 30 H 1.09007 * 109.47196 * 240.00318 * 2 1 3 31 31 H 1.08999 * 109.47478 * 119.99933 * 2 1 3 32 32 H 0.96998 * 119.99798 * 359.97438 * 8 6 5 33 33 H 1.08996 * 109.47231 * 65.08215 * 9 8 6 34 34 H 1.08997 * 109.46653 * 305.08193 * 9 8 6 35 35 H 1.08995 * 110.72073 * 259.97321 * 12 10 9 36 36 H 1.09002 * 110.71713 * 23.24396 * 12 10 9 37 37 H 1.09006 * 111.00231 * 82.56924 * 13 12 10 38 38 H 1.08992 * 111.00699 * 206.42714 * 13 12 10 39 39 H 1.08999 * 110.36427 * 278.17120 * 14 13 12 40 40 H 1.09004 * 110.36520 * 155.84509 * 14 13 12 41 41 H 0.97002 * 120.00528 * 179.97438 * 19 18 16 42 42 H 1.07997 * 123.34781 * 179.75633 * 24 5 4 43 43 H 1.09003 * 109.47537 * 89.99927 * 26 25 3 44 44 H 1.09001 * 109.47583 * 209.99940 * 26 25 3 45 45 H 1.09004 * 109.46824 * 329.99667 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3551 2.3322 -1.4057 5 6 2.8472 3.7232 -0.4491 6 6 3.3025 5.0078 -0.9883 7 8 3.6209 5.9067 -0.2321 8 7 3.3685 5.1938 -2.3216 9 6 3.8242 6.4777 -2.8604 10 6 3.6855 6.4692 -4.3841 11 1 4.2396 5.6286 -4.8020 12 6 2.1965 6.3628 -4.7751 13 6 2.0933 7.2981 -6.0087 14 6 3.0894 8.4228 -5.6305 15 7 4.1935 7.7323 -4.9393 16 6 5.4790 8.1917 -4.8317 17 1 6.2641 7.5272 -4.5024 18 6 5.7729 9.5115 -5.1457 19 7 4.8162 10.3211 -5.5474 20 14 7.5264 10.1383 -4.9982 21 1 8.4107 9.3508 -5.8944 22 1 7.5748 11.5701 -5.3893 23 1 7.9879 9.9923 -3.5943 24 6 2.7427 3.4125 0.8775 25 6 2.2850 2.1358 1.1025 26 6 2.0876 1.5804 2.4894 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.1151 4.4773 -2.9243 33 1 4.8688 6.6345 -2.5914 34 1 3.2173 7.2820 -2.4448 35 1 1.9410 5.3383 -5.0455 36 1 1.5589 6.7197 -3.9662 37 1 2.4106 6.7842 -6.9162 38 1 1.0827 7.6916 -6.1173 39 1 2.6143 9.1414 -4.9627 40 1 3.4563 8.9219 -6.5273 41 1 5.0215 11.2435 -5.7665 42 1 2.9919 4.1023 1.6702 43 1 3.0087 1.1033 2.8243 44 1 1.8290 2.3901 3.1717 45 1 1.2823 0.8459 2.4754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028303420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:42 Heat of formation + Delta-G solvation = 1.022621 kcal Electronic energy + Delta-G solvation = -24541.978294 eV Core-core repulsion = 21071.973827 eV Total energy + Delta-G solvation = -3470.004467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.67323 -38.62098 -37.54492 -34.27941 -34.04126 -32.48505 -30.73740 -29.66105 -28.76775 -27.62212 -25.44088 -24.54489 -23.39484 -22.49562 -20.65869 -20.14506 -19.64765 -18.74132 -17.96367 -16.79154 -16.37495 -15.72193 -15.14003 -15.08835 -14.62109 -14.58171 -14.36245 -14.05310 -13.81320 -13.57221 -13.23029 -13.07546 -12.90140 -12.46596 -12.37488 -12.11124 -11.94354 -11.87729 -11.70887 -11.61527 -11.44106 -11.31704 -10.96670 -10.94765 -10.77214 -10.25745 -10.13641 -10.00267 -9.86633 -9.77494 -9.67077 -8.88240 -8.68559 -8.59275 -8.49521 -6.85518 -5.76273 -3.13112 0.40277 1.31440 1.73569 2.22548 3.35317 3.35898 3.42557 3.45933 3.47336 4.35626 4.48679 4.63673 4.78637 4.88891 5.00574 5.06696 5.16697 5.32554 5.36174 5.39539 5.42434 5.45897 5.49856 5.57400 5.61702 5.65049 5.77938 5.80389 5.83458 6.04640 6.10174 6.16396 6.24009 6.28196 6.45206 6.53605 6.59017 6.68035 6.79272 7.03966 7.52071 7.59952 7.70618 7.79177 8.25226 8.38607 9.17340 9.77812 10.44714 11.35314 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.002760 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.007670 B =10142.321605 C =10961.205473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.201 4.201 4 S 0.195 5.805 5 C -0.254 4.254 6 C 0.582 3.418 7 O -0.531 6.531 8 N -0.717 5.717 9 C 0.109 3.891 10 C 0.152 3.848 11 H 0.038 0.962 12 C -0.127 4.127 13 C -0.148 4.148 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.235 4.235 17 H 0.076 0.924 18 C -0.001 4.001 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C -0.055 4.055 25 C -0.120 4.120 26 C -0.093 4.093 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.392 0.608 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 -21.730 9.524 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.320 4.320 4 S 0.464 5.536 5 C -0.375 4.375 6 C 0.367 3.633 7 O -0.409 6.409 8 N -0.368 5.368 9 C -0.015 4.015 10 C 0.043 3.957 11 H 0.055 0.945 12 C -0.165 4.165 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.363 4.363 17 H 0.093 0.907 18 C -0.198 4.198 19 N -0.562 5.562 20 Si 0.741 3.259 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.088 4.088 25 C -0.133 4.133 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.226 0.774 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.169 0.831 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.610 -21.089 8.373 24.641 hybrid contribution 0.929 0.394 1.444 1.762 sum -8.681 -20.695 9.817 24.495 Atomic orbital electron populations 1.21796 0.94140 1.02045 1.02673 1.20116 0.96304 0.89479 1.03378 1.24010 1.08625 1.02040 0.97360 1.82938 1.60383 1.02599 1.07636 1.24678 1.15375 0.99431 0.97987 1.16989 0.78165 0.85444 0.82726 1.90841 1.49334 1.42683 1.58067 1.46037 1.67400 1.17657 1.05696 1.22315 1.00301 0.82720 0.96207 1.21131 0.93007 0.91736 0.89824 0.94459 1.22618 0.96313 0.98935 0.98677 1.23007 0.99887 0.98968 0.96818 1.21486 0.85939 0.90757 0.97132 1.44482 1.07056 1.19312 1.60376 1.18947 0.83210 0.93577 1.40582 0.90652 1.24897 0.97840 0.95788 1.01307 1.69921 1.30673 1.05578 1.50036 0.86219 0.83838 0.77792 0.78041 1.21066 1.21546 1.20929 1.20617 0.97111 0.95752 0.95359 1.18644 1.04171 0.93984 0.96458 1.20508 1.01994 1.01007 0.91672 0.92303 0.91950 0.92189 0.90688 0.89867 0.77427 0.91250 0.91279 0.92399 0.91787 0.92266 0.92311 0.95668 0.90696 0.93529 0.83076 0.91270 0.91338 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.05 -0.35 5.72 -27.89 -0.16 -0.51 16 3 C -0.20 -1.86 5.53 -35.86 -0.20 -2.06 16 4 S 0.19 1.99 22.10 -107.50 -2.38 -0.39 16 5 C -0.25 -3.48 6.45 -36.79 -0.24 -3.72 16 6 C 0.58 10.00 7.78 -12.90 -0.10 9.90 16 7 O -0.53 -11.23 16.84 5.18 0.09 -11.14 16 8 N -0.72 -11.61 5.32 -61.65 -0.33 -11.94 16 9 C 0.11 2.17 5.07 -4.04 -0.02 2.15 16 10 C 0.15 3.03 3.22 -66.95 -0.22 2.81 16 11 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 12 C -0.13 -2.15 6.10 -24.90 -0.15 -2.30 16 13 C -0.15 -2.72 7.09 -24.58 -0.17 -2.90 16 14 C 0.17 4.10 5.43 -2.52 -0.01 4.09 16 15 N -0.59 -14.66 3.13 -162.56 -0.51 -15.17 16 16 C -0.23 -6.46 9.76 -15.06 -0.15 -6.61 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C 0.00 -0.03 5.47 -17.44 -0.10 -0.13 16 19 N -0.92 -26.74 10.53 55.49 0.58 -26.15 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.06 -0.69 9.80 -40.43 -0.40 -1.09 16 25 C -0.12 -1.20 5.78 -106.46 -0.62 -1.82 16 26 C -0.09 -0.67 9.55 36.00 0.34 -0.33 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.36 7.80 -51.93 -0.41 -0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.46 7.25 -51.93 -0.38 0.08 16 32 H 0.39 5.25 7.45 -40.82 -0.30 4.95 16 33 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 34 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.07 1.99 6.85 -51.93 -0.36 1.63 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.47 8.13 -51.93 -0.42 0.04 16 45 H 0.07 0.40 6.86 -51.93 -0.36 0.04 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -32.07 377.00 -10.92 -42.99 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.23 Total: 1.92 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.81 Total: -3.00 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.25 Total: -53.27 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.07 -10.92 -42.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028303420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.012 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds