Wall clock time and date at job start Tue Mar 31 2020 13:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46826 * 2 1 4 4 S 1.70616 * 124.52269 * 269.97362 * 3 2 1 5 5 C 1.75835 * 91.56559 * 180.02562 * 4 3 2 6 6 C 1.46574 * 125.46061 * 179.97438 * 5 4 3 7 7 O 1.21706 * 120.00116 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00145 * 0.03015 * 6 5 4 9 9 C 1.46503 * 120.00011 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46708 * 185.08684 * 9 8 6 11 11 H 1.09004 * 109.87593 * 303.54812 * 10 9 8 12 12 C 1.54324 * 109.88817 * 64.57111 * 10 9 8 13 13 C 1.55152 * 102.94697 * 141.60745 * 12 10 9 14 14 C 1.54920 * 101.58099 * 324.50026 * 13 12 10 15 15 N 1.47031 * 109.87946 * 182.37892 * 10 9 8 16 16 C 1.36934 * 125.64805 * 61.60594 * 15 10 9 17 17 H 1.08000 * 120.00270 * 13.60042 * 16 15 10 18 18 C 1.38808 * 119.99628 * 193.60384 * 16 15 10 19 19 N 1.31611 * 120.00376 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47403 * 59.99746 * 20 18 16 22 22 H 1.48497 * 109.47373 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47374 * 299.99906 * 20 18 16 24 24 C 1.36653 * 109.07926 * 0.24044 * 5 4 3 25 25 C 1.33814 * 124.52183 * 89.99868 * 3 2 1 26 26 C 1.50693 * 122.45132 * 359.95852 * 25 3 2 27 27 H 1.09003 * 109.47176 * 60.00470 * 1 2 3 28 28 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47150 * 299.99749 * 1 2 3 30 30 H 1.09007 * 109.47196 * 240.00318 * 2 1 3 31 31 H 1.08999 * 109.47478 * 119.99933 * 2 1 3 32 32 H 0.96998 * 119.99798 * 359.97438 * 8 6 5 33 33 H 1.08996 * 109.47231 * 65.08215 * 9 8 6 34 34 H 1.08997 * 109.46653 * 305.08193 * 9 8 6 35 35 H 1.08995 * 110.72073 * 259.97321 * 12 10 9 36 36 H 1.09002 * 110.71713 * 23.24396 * 12 10 9 37 37 H 1.09006 * 111.00231 * 82.56924 * 13 12 10 38 38 H 1.08992 * 111.00699 * 206.42714 * 13 12 10 39 39 H 1.08999 * 110.36427 * 278.17120 * 14 13 12 40 40 H 1.09004 * 110.36520 * 155.84509 * 14 13 12 41 41 H 0.97002 * 120.00528 * 179.97438 * 19 18 16 42 42 H 1.07997 * 123.34781 * 179.75633 * 24 5 4 43 43 H 1.09003 * 109.47537 * 89.99927 * 26 25 3 44 44 H 1.09001 * 109.47583 * 209.99940 * 26 25 3 45 45 H 1.09004 * 109.46824 * 329.99667 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3551 2.3322 -1.4057 5 6 2.8472 3.7232 -0.4491 6 6 3.3025 5.0078 -0.9883 7 8 3.6209 5.9067 -0.2321 8 7 3.3685 5.1938 -2.3216 9 6 3.8242 6.4777 -2.8604 10 6 3.6855 6.4692 -4.3841 11 1 4.2396 5.6286 -4.8020 12 6 2.1965 6.3628 -4.7751 13 6 2.0933 7.2981 -6.0087 14 6 3.0894 8.4228 -5.6305 15 7 4.1935 7.7323 -4.9393 16 6 5.4790 8.1917 -4.8317 17 1 6.2641 7.5272 -4.5024 18 6 5.7729 9.5115 -5.1457 19 7 4.8162 10.3211 -5.5474 20 14 7.5264 10.1383 -4.9982 21 1 8.4107 9.3508 -5.8944 22 1 7.5748 11.5701 -5.3893 23 1 7.9879 9.9923 -3.5943 24 6 2.7427 3.4125 0.8775 25 6 2.2850 2.1358 1.1025 26 6 2.0876 1.5804 2.4894 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.1151 4.4773 -2.9243 33 1 4.8688 6.6345 -2.5914 34 1 3.2173 7.2820 -2.4448 35 1 1.9410 5.3383 -5.0455 36 1 1.5589 6.7197 -3.9662 37 1 2.4106 6.7842 -6.9162 38 1 1.0827 7.6916 -6.1173 39 1 2.6143 9.1414 -4.9627 40 1 3.4563 8.9219 -6.5273 41 1 5.0215 11.2435 -5.7665 42 1 2.9919 4.1023 1.6702 43 1 3.0087 1.1033 2.8243 44 1 1.8290 2.3901 3.1717 45 1 1.2823 0.8459 2.4754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028303420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:41 Heat of formation + Delta-G solvation = -18.227143 kcal Electronic energy + Delta-G solvation = -24542.813026 eV Core-core repulsion = 21071.973827 eV Total energy + Delta-G solvation = -3470.839200 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98985 -39.66269 -39.09997 -35.86061 -34.72318 -34.42464 -31.75276 -31.28780 -30.31569 -28.36377 -26.90687 -26.24722 -24.65902 -23.24238 -22.13251 -21.67513 -21.21629 -19.77517 -19.08477 -18.54482 -17.57677 -17.13743 -16.62297 -16.51285 -16.15628 -15.71527 -15.39992 -15.19436 -15.07397 -14.74615 -14.50829 -14.03473 -13.98590 -13.67422 -13.47861 -13.43023 -13.13726 -13.03393 -13.00684 -12.88701 -12.67974 -12.61060 -12.22135 -12.07406 -12.05337 -11.88332 -11.77213 -11.63728 -11.50649 -11.43321 -11.26177 -10.69665 -10.27792 -9.64760 -9.32672 -8.89513 -7.89643 -5.27612 -0.54012 0.44295 0.89131 1.30915 1.42949 1.46586 1.52132 2.01281 2.10385 2.48210 3.29195 3.62150 3.72481 3.79402 3.93892 3.94658 4.10682 4.19807 4.23155 4.40069 4.42573 4.46597 4.49925 4.52410 4.68695 4.82776 4.86297 4.87280 4.94253 4.96615 5.02710 5.07972 5.10379 5.15034 5.15116 5.26817 5.32584 5.43096 5.44578 5.51143 5.55222 5.65264 5.76716 6.20933 6.39574 7.05281 7.07683 7.73916 8.39536 9.20698 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.002760 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.007670 B =10142.321605 C =10961.205473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.185 4.185 4 S 0.238 5.762 5 C -0.299 4.299 6 C 0.581 3.419 7 O -0.584 6.584 8 N -0.704 5.704 9 C 0.129 3.871 10 C 0.148 3.852 11 H 0.053 0.947 12 C -0.115 4.115 13 C -0.132 4.132 14 C 0.172 3.828 15 N -0.610 5.610 16 C -0.242 4.242 17 H 0.077 0.923 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.973 3.027 21 H -0.273 1.273 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.053 4.053 25 C -0.134 4.134 26 C -0.091 4.091 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.410 0.590 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.083 0.917 39 H -0.010 1.010 40 H 0.040 0.960 41 H 0.248 0.752 42 H 0.141 0.859 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.108 -25.840 9.551 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.305 4.305 4 S 0.508 5.492 5 C -0.419 4.419 6 C 0.369 3.631 7 O -0.466 6.466 8 N -0.355 5.355 9 C 0.003 3.997 10 C 0.041 3.959 11 H 0.071 0.929 12 C -0.153 4.153 13 C -0.170 4.170 14 C 0.047 3.953 15 N -0.334 5.334 16 C -0.372 4.372 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.801 3.199 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.210 1.210 24 C -0.088 4.088 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.246 0.754 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.008 0.992 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.158 0.842 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.858 -25.269 8.379 28.751 hybrid contribution 1.264 1.523 1.496 2.481 sum -9.594 -23.745 9.876 27.448 Atomic orbital electron populations 1.21803 0.93353 1.03161 1.02281 1.20309 0.96820 0.87486 1.04873 1.24527 1.06216 1.03127 0.96675 1.82681 1.59194 1.00272 1.07028 1.24337 1.18764 0.99500 0.99255 1.17477 0.76981 0.86282 0.82340 1.90803 1.51713 1.44895 1.59169 1.45719 1.67115 1.16725 1.05939 1.21784 0.97840 0.83728 0.96336 1.21339 0.95503 0.89912 0.89191 0.92914 1.22617 0.93562 1.01295 0.97819 1.22871 0.99343 0.96949 0.97856 1.21307 0.86891 0.92231 0.94823 1.44744 1.06627 1.20752 1.61280 1.19273 0.84753 0.93820 1.39309 0.90556 1.25677 1.01483 0.96227 1.01916 1.70128 1.32310 1.05373 1.51499 0.85250 0.79825 0.76977 0.77891 1.19818 1.21830 1.20954 1.20792 0.96394 0.96777 0.94810 1.18826 1.04470 0.93023 0.98245 1.20571 1.03123 1.01416 0.89900 0.92899 0.90144 0.92444 0.89432 0.88190 0.75382 0.94457 0.94212 0.87683 0.91819 0.90884 0.89819 0.99152 0.94146 0.94243 0.84172 0.90364 0.91330 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 71.98 0.71 -0.45 16 2 C -0.06 -0.50 5.72 29.85 0.17 -0.33 16 3 C -0.19 -2.86 5.53 24.68 0.14 -2.73 16 4 S 0.24 4.24 22.10 -56.49 -1.25 2.99 16 5 C -0.30 -8.03 6.45 24.07 0.16 -7.88 16 6 C 0.58 20.47 7.78 86.42 0.67 21.14 16 7 O -0.58 -26.10 16.84 -4.37 -0.07 -26.17 16 8 N -0.70 -22.68 5.32 -467.18 -2.49 -25.17 16 9 C 0.13 5.29 5.07 86.38 0.44 5.72 16 10 C 0.15 5.83 3.22 45.34 0.15 5.98 16 11 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.12 -3.59 6.10 31.78 0.19 -3.40 16 13 C -0.13 -4.59 7.09 31.99 0.23 -4.36 16 14 C 0.17 8.48 5.43 86.86 0.47 8.95 16 15 N -0.61 -31.10 3.13 -668.22 -2.09 -33.19 16 16 C -0.24 -13.73 9.76 84.03 0.82 -12.91 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.06 -3.43 5.47 84.86 0.46 -2.97 16 19 N -0.95 -57.63 10.53 21.65 0.23 -57.40 16 20 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 C -0.05 -1.31 9.80 21.72 0.21 -1.10 16 25 C -0.13 -2.40 5.78 -21.05 -0.12 -2.53 16 26 C -0.09 -1.08 9.55 71.23 0.68 -0.40 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.50 7.80 -2.39 -0.02 0.48 16 30 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.10 0.64 7.25 -2.39 -0.02 0.62 16 32 H 0.41 10.20 7.45 -92.71 -0.69 9.51 16 33 H 0.04 1.75 7.92 -2.39 -0.02 1.73 16 34 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 2.02 7.81 -2.39 -0.02 2.00 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 39 H -0.01 -0.53 8.08 -2.39 -0.02 -0.55 16 40 H 0.04 2.23 6.85 -2.39 -0.02 2.22 16 41 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 45 H 0.08 0.70 6.86 -2.39 -0.02 0.68 16 Total: -1.00 -74.86 377.00 2.03 -72.83 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.29 Total: 14.34 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.38 Total: 2.75 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -4.35 Total: -115.76 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.07 Total: -26.17 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.25 Total: 2.99 kcal Total: -74.86 2.03 -72.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028303420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.599 kcal (2) G-P(sol) polarization free energy of solvation -74.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds