Wall clock time and date at job start Tue Mar 31 2020 13:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47301 * 2 1 4 4 S 1.70619 * 124.52649 * 269.70583 * 3 2 1 5 5 C 1.75829 * 91.56628 * 179.91754 * 4 3 2 6 6 C 1.46584 * 125.45744 * 180.02562 * 5 4 3 7 7 O 1.21704 * 119.99503 * 180.33489 * 6 5 4 8 8 N 1.34772 * 120.00142 * 0.33509 * 6 5 4 9 9 C 1.46499 * 119.99748 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46958 * 174.96909 * 9 8 6 11 11 H 1.09003 * 109.87207 * 55.56785 * 10 9 8 12 12 C 1.54324 * 109.88353 * 294.55240 * 10 9 8 13 13 C 1.55154 * 102.93819 * 218.38591 * 12 10 9 14 14 C 1.54908 * 101.58321 * 35.50393 * 13 12 10 15 15 N 1.47021 * 109.88283 * 176.73846 * 10 9 8 16 16 C 1.36933 * 125.65281 * 298.34094 * 15 10 9 17 17 H 1.08001 * 120.00070 * 345.84901 * 16 15 10 18 18 C 1.38814 * 120.00204 * 165.85005 * 16 15 10 19 19 N 1.31615 * 120.00211 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47294 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47520 * 119.99422 * 20 18 16 23 23 H 1.48497 * 109.47023 * 239.99655 * 20 18 16 24 24 C 1.36644 * 109.08330 * 0.33981 * 5 4 3 25 25 C 1.33816 * 124.52441 * 89.99723 * 3 2 1 26 26 C 1.50705 * 122.44636 * 0.03059 * 25 3 2 27 27 H 1.08996 * 109.46769 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46782 * 299.99830 * 1 2 3 29 29 H 1.09005 * 109.47245 * 59.99792 * 1 2 3 30 30 H 1.08995 * 109.47353 * 120.00156 * 2 1 3 31 31 H 1.09000 * 109.47242 * 240.00378 * 2 1 3 32 32 H 0.96995 * 120.00308 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47369 * 294.96752 * 9 8 6 34 34 H 1.08997 * 109.47478 * 54.97213 * 9 8 6 35 35 H 1.09001 * 110.71769 * 336.74972 * 12 10 9 36 36 H 1.09000 * 110.71609 * 100.02432 * 12 10 9 37 37 H 1.09002 * 111.00186 * 153.57289 * 13 12 10 38 38 H 1.08992 * 111.00975 * 277.42345 * 13 12 10 39 39 H 1.08996 * 110.37154 * 81.82684 * 14 13 12 40 40 H 1.09007 * 110.36591 * 204.03618 * 14 13 12 41 41 H 0.97000 * 120.00456 * 180.02562 * 19 18 16 42 42 H 1.07997 * 123.35408 * 179.78490 * 24 5 4 43 43 H 1.08993 * 109.47314 * 89.99481 * 26 25 3 44 44 H 1.09004 * 109.46894 * 210.00022 * 26 25 3 45 45 H 1.09000 * 109.46752 * 329.99501 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3615 2.3301 -1.4056 5 6 2.8463 3.7235 -0.4491 6 6 3.3017 5.0082 -0.9883 7 8 3.6201 5.9070 -0.2319 8 7 3.3678 5.1941 -2.3215 9 6 3.8224 6.4784 -2.8602 10 6 3.9238 6.3849 -4.3841 11 1 2.9681 6.0661 -4.8002 12 6 5.0281 5.3806 -4.7760 13 6 5.6852 6.0512 -6.0112 14 6 5.5979 7.5511 -5.6339 15 7 4.3042 7.6913 -4.9409 16 6 3.5773 8.8468 -4.8340 17 1 2.5469 8.8088 -4.5125 18 6 4.1645 10.0671 -5.1389 19 7 5.4203 10.1136 -5.5302 20 14 3.1730 11.6434 -4.9923 21 1 1.7970 11.3220 -4.5355 22 1 3.8226 12.5473 -4.0095 23 1 3.1108 12.3139 -6.3158 24 6 2.7372 3.4145 0.8775 25 6 2.2851 2.1358 1.1025 26 6 2.0892 1.5798 2.4894 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1137 4.4780 -2.9242 33 1 3.1101 7.2581 -2.5907 34 1 4.8007 6.7207 -2.4452 35 1 5.7511 5.2678 -3.9681 36 1 4.5952 4.4171 -5.0449 37 1 6.7227 5.7359 -6.1212 38 1 5.1169 5.8426 -6.9176 39 1 6.4165 7.8231 -4.9677 40 1 5.6185 8.1698 -6.5312 41 1 5.8308 10.9663 -5.7429 42 1 2.9811 4.1061 1.6703 43 1 3.0108 1.1035 2.8235 44 1 1.8302 2.3892 3.1721 45 1 1.2846 0.8446 2.4757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028303422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:46 Heat of formation + Delta-G solvation = 0.707918 kcal Electronic energy + Delta-G solvation = -24534.667746 eV Core-core repulsion = 21064.649632 eV Total energy + Delta-G solvation = -3470.018114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.67350 -38.62072 -37.54719 -34.28074 -34.04077 -32.48859 -30.73747 -29.66103 -28.77311 -27.62306 -25.44241 -24.54719 -23.39555 -22.49440 -20.65565 -20.15364 -19.65427 -18.74090 -17.96379 -16.79180 -16.37676 -15.71470 -15.26829 -14.91646 -14.64145 -14.56949 -14.46304 -13.96107 -13.87067 -13.54923 -13.22923 -13.07946 -12.90263 -12.47028 -12.37557 -12.10434 -11.94007 -11.88924 -11.71376 -11.61029 -11.44318 -11.32448 -10.96537 -10.94139 -10.80611 -10.25504 -10.10475 -9.98523 -9.86703 -9.78000 -9.68272 -8.88312 -8.68747 -8.59893 -8.49533 -6.85234 -5.77184 -3.13892 0.40300 1.31440 1.73561 2.22567 3.35295 3.35649 3.41252 3.46658 3.48355 4.35676 4.48209 4.63705 4.78623 4.88983 5.00568 5.06746 5.16723 5.32368 5.36204 5.39339 5.42417 5.45995 5.49641 5.57467 5.61460 5.65111 5.77970 5.80249 5.83605 6.04575 6.10028 6.16322 6.23950 6.28189 6.44984 6.53558 6.59096 6.67910 6.79049 7.03875 7.51455 7.60421 7.70610 7.79120 8.24547 8.38557 9.16899 9.77322 10.44394 11.34751 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020478 B = 0.002744 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.967068 B =10202.615321 C =10810.945055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.201 4.201 4 S 0.195 5.805 5 C -0.254 4.254 6 C 0.582 3.418 7 O -0.531 6.531 8 N -0.717 5.717 9 C 0.109 3.891 10 C 0.152 3.848 11 H 0.038 0.962 12 C -0.127 4.127 13 C -0.148 4.148 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.234 4.234 17 H 0.077 0.923 18 C -0.002 4.002 19 N -0.915 5.915 20 Si 0.911 3.089 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C -0.055 4.055 25 C -0.120 4.120 26 C -0.093 4.093 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.392 0.608 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 -22.905 9.508 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.320 4.320 4 S 0.464 5.536 5 C -0.375 4.375 6 C 0.367 3.633 7 O -0.409 6.409 8 N -0.368 5.368 9 C -0.016 4.016 10 C 0.043 3.957 11 H 0.055 0.945 12 C -0.165 4.165 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.362 4.362 17 H 0.094 0.906 18 C -0.199 4.199 19 N -0.561 5.561 20 Si 0.741 3.259 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C -0.088 4.088 25 C -0.133 4.133 26 C -0.152 4.152 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.226 0.774 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.169 0.831 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.474 -22.249 8.365 24.636 hybrid contribution -0.439 0.885 1.434 1.741 sum -6.913 -21.364 9.798 24.500 Atomic orbital electron populations 1.21796 0.94143 1.02043 1.02682 1.20114 0.96305 0.89476 1.03370 1.24011 1.08599 1.02068 0.97359 1.82937 1.60408 1.02567 1.07642 1.24678 1.15430 0.99379 0.97988 1.16988 0.78179 0.85426 0.82724 1.90840 1.49321 1.42710 1.58058 1.46032 1.67343 1.17711 1.05697 1.22314 1.00243 0.82799 0.96196 1.21132 0.96164 0.88581 0.89819 0.94466 1.22620 0.98118 0.97131 0.98665 1.23004 0.99023 0.99837 0.96814 1.21468 0.87181 0.89575 0.97075 1.44488 1.22398 1.04150 1.60199 1.19037 0.93512 0.82997 1.40642 0.90561 1.24913 0.95965 0.97660 1.01347 1.69944 1.11370 1.24367 1.50449 0.86067 0.79115 0.83421 0.77302 1.20351 1.21587 1.21703 1.20614 0.97128 0.95735 0.95360 1.18647 1.04195 0.93961 0.96458 1.20510 1.01994 1.01004 0.91672 0.91946 0.92189 0.92302 0.89867 0.90693 0.77428 0.91208 0.91296 0.91780 0.92394 0.92307 0.92268 0.95614 0.90823 0.93632 0.83075 0.91265 0.91342 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.05 -0.35 5.72 -27.89 -0.16 -0.51 16 3 C -0.20 -1.86 5.53 -35.86 -0.20 -2.06 16 4 S 0.19 1.99 22.10 -107.50 -2.38 -0.39 16 5 C -0.25 -3.48 6.45 -36.79 -0.24 -3.72 16 6 C 0.58 10.00 7.78 -12.90 -0.10 9.90 16 7 O -0.53 -11.22 16.84 5.19 0.09 -11.13 16 8 N -0.72 -11.61 5.34 -61.65 -0.33 -11.93 16 9 C 0.11 2.17 5.08 -4.04 -0.02 2.15 16 10 C 0.15 3.03 3.21 -66.95 -0.21 2.81 16 11 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 12 C -0.13 -2.15 6.14 -24.90 -0.15 -2.30 16 13 C -0.15 -2.72 7.08 -24.58 -0.17 -2.89 16 14 C 0.17 4.10 5.42 -2.53 -0.01 4.09 16 15 N -0.59 -14.65 3.13 -162.57 -0.51 -15.16 16 16 C -0.23 -6.42 9.75 -15.06 -0.15 -6.57 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 19 N -0.92 -26.72 10.56 55.49 0.59 -26.13 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C -0.06 -0.69 9.80 -40.44 -0.40 -1.09 16 25 C -0.12 -1.20 5.78 -106.45 -0.62 -1.82 16 26 C -0.09 -0.67 9.56 36.01 0.34 -0.33 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.37 7.81 -51.93 -0.41 -0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.46 7.25 -51.93 -0.38 0.08 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.39 5.25 7.47 -40.82 -0.31 4.94 16 33 H 0.07 1.55 7.90 -51.93 -0.41 1.14 16 34 H 0.07 1.51 8.06 -51.93 -0.42 1.10 16 35 H 0.06 1.08 7.80 -51.93 -0.40 0.68 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.07 1.95 6.90 -51.92 -0.36 1.60 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 45 H 0.07 0.40 6.86 -51.93 -0.36 0.04 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -32.09 377.06 -10.92 -43.01 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.23 Total: 1.83 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.81 Total: -2.98 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.25 Total: -53.22 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.09 -10.92 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028303422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.718 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds