Wall clock time and date at job start Tue Mar 31 2020 13:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47301 * 2 1 4 4 S 1.70619 * 124.52649 * 269.70583 * 3 2 1 5 5 C 1.75829 * 91.56628 * 179.91754 * 4 3 2 6 6 C 1.46584 * 125.45744 * 180.02562 * 5 4 3 7 7 O 1.21704 * 119.99503 * 180.33489 * 6 5 4 8 8 N 1.34772 * 120.00142 * 0.33509 * 6 5 4 9 9 C 1.46499 * 119.99748 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46958 * 174.96909 * 9 8 6 11 11 H 1.09003 * 109.87207 * 55.56785 * 10 9 8 12 12 C 1.54324 * 109.88353 * 294.55240 * 10 9 8 13 13 C 1.55154 * 102.93819 * 218.38591 * 12 10 9 14 14 C 1.54908 * 101.58321 * 35.50393 * 13 12 10 15 15 N 1.47021 * 109.88283 * 176.73846 * 10 9 8 16 16 C 1.36933 * 125.65281 * 298.34094 * 15 10 9 17 17 H 1.08001 * 120.00070 * 345.84901 * 16 15 10 18 18 C 1.38814 * 120.00204 * 165.85005 * 16 15 10 19 19 N 1.31615 * 120.00211 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47294 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47520 * 119.99422 * 20 18 16 23 23 H 1.48497 * 109.47023 * 239.99655 * 20 18 16 24 24 C 1.36644 * 109.08330 * 0.33981 * 5 4 3 25 25 C 1.33816 * 124.52441 * 89.99723 * 3 2 1 26 26 C 1.50705 * 122.44636 * 0.03059 * 25 3 2 27 27 H 1.08996 * 109.46769 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46782 * 299.99830 * 1 2 3 29 29 H 1.09005 * 109.47245 * 59.99792 * 1 2 3 30 30 H 1.08995 * 109.47353 * 120.00156 * 2 1 3 31 31 H 1.09000 * 109.47242 * 240.00378 * 2 1 3 32 32 H 0.96995 * 120.00308 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47369 * 294.96752 * 9 8 6 34 34 H 1.08997 * 109.47478 * 54.97213 * 9 8 6 35 35 H 1.09001 * 110.71769 * 336.74972 * 12 10 9 36 36 H 1.09000 * 110.71609 * 100.02432 * 12 10 9 37 37 H 1.09002 * 111.00186 * 153.57289 * 13 12 10 38 38 H 1.08992 * 111.00975 * 277.42345 * 13 12 10 39 39 H 1.08996 * 110.37154 * 81.82684 * 14 13 12 40 40 H 1.09007 * 110.36591 * 204.03618 * 14 13 12 41 41 H 0.97000 * 120.00456 * 180.02562 * 19 18 16 42 42 H 1.07997 * 123.35408 * 179.78490 * 24 5 4 43 43 H 1.08993 * 109.47314 * 89.99481 * 26 25 3 44 44 H 1.09004 * 109.46894 * 210.00022 * 26 25 3 45 45 H 1.09000 * 109.46752 * 329.99501 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3615 2.3301 -1.4056 5 6 2.8463 3.7235 -0.4491 6 6 3.3017 5.0082 -0.9883 7 8 3.6201 5.9070 -0.2319 8 7 3.3678 5.1941 -2.3215 9 6 3.8224 6.4784 -2.8602 10 6 3.9238 6.3849 -4.3841 11 1 2.9681 6.0661 -4.8002 12 6 5.0281 5.3806 -4.7760 13 6 5.6852 6.0512 -6.0112 14 6 5.5979 7.5511 -5.6339 15 7 4.3042 7.6913 -4.9409 16 6 3.5773 8.8468 -4.8340 17 1 2.5469 8.8088 -4.5125 18 6 4.1645 10.0671 -5.1389 19 7 5.4203 10.1136 -5.5302 20 14 3.1730 11.6434 -4.9923 21 1 1.7970 11.3220 -4.5355 22 1 3.8226 12.5473 -4.0095 23 1 3.1108 12.3139 -6.3158 24 6 2.7372 3.4145 0.8775 25 6 2.2851 2.1358 1.1025 26 6 2.0892 1.5798 2.4894 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1137 4.4780 -2.9242 33 1 3.1101 7.2581 -2.5907 34 1 4.8007 6.7207 -2.4452 35 1 5.7511 5.2678 -3.9681 36 1 4.5952 4.4171 -5.0449 37 1 6.7227 5.7359 -6.1212 38 1 5.1169 5.8426 -6.9176 39 1 6.4165 7.8231 -4.9677 40 1 5.6185 8.1698 -6.5312 41 1 5.8308 10.9663 -5.7429 42 1 2.9811 4.1061 1.6703 43 1 3.0108 1.1035 2.8235 44 1 1.8302 2.3892 3.1721 45 1 1.2846 0.8446 2.4757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028303422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:45 Heat of formation + Delta-G solvation = -18.571099 kcal Electronic energy + Delta-G solvation = -24535.503747 eV Core-core repulsion = 21064.649632 eV Total energy + Delta-G solvation = -3470.854115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.98856 -39.66229 -39.10086 -35.85964 -34.72417 -34.42817 -31.75213 -31.28887 -30.31920 -28.36551 -26.90776 -26.25106 -24.65803 -23.24252 -22.12953 -21.68289 -21.22009 -19.77368 -19.08556 -18.54567 -17.57643 -17.13672 -16.64770 -16.50711 -16.12657 -15.71873 -15.41891 -15.19655 -15.08923 -14.70552 -14.51128 -14.07620 -13.96130 -13.69112 -13.46431 -13.43645 -13.13136 -13.04623 -13.01218 -12.87841 -12.71625 -12.61522 -12.22251 -12.05804 -11.99692 -11.89615 -11.77156 -11.63855 -11.51443 -11.43348 -11.26044 -10.71157 -10.27631 -9.64735 -9.32619 -8.89191 -7.90521 -5.28328 -0.53911 0.44374 0.89197 1.31008 1.42439 1.44724 1.54050 2.01349 2.10502 2.47704 3.28938 3.62045 3.72451 3.79424 3.93988 3.94634 4.10695 4.19813 4.23192 4.40178 4.42289 4.46416 4.49920 4.52352 4.68754 4.82753 4.86252 4.87421 4.94321 4.96755 5.02641 5.07597 5.10511 5.14797 5.15315 5.26710 5.32363 5.42888 5.44604 5.51488 5.55189 5.64875 5.76647 6.20584 6.39693 7.05322 7.07506 7.73468 8.39277 9.20466 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020478 B = 0.002744 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.967068 B =10202.615321 C =10810.945055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.186 4.186 4 S 0.238 5.762 5 C -0.299 4.299 6 C 0.581 3.419 7 O -0.583 6.583 8 N -0.704 5.704 9 C 0.129 3.871 10 C 0.148 3.852 11 H 0.053 0.947 12 C -0.115 4.115 13 C -0.132 4.132 14 C 0.173 3.827 15 N -0.610 5.610 16 C -0.240 4.240 17 H 0.077 0.923 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.295 1.295 23 H -0.287 1.287 24 C -0.053 4.053 25 C -0.134 4.134 26 C -0.091 4.091 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.410 0.590 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.073 0.927 39 H -0.009 1.009 40 H 0.039 0.961 41 H 0.248 0.752 42 H 0.141 0.859 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 -26.930 9.559 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.306 4.306 4 S 0.508 5.492 5 C -0.419 4.419 6 C 0.369 3.631 7 O -0.466 6.466 8 N -0.355 5.355 9 C 0.003 3.997 10 C 0.041 3.959 11 H 0.071 0.929 12 C -0.153 4.153 13 C -0.170 4.170 14 C 0.048 3.952 15 N -0.334 5.334 16 C -0.369 4.369 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.593 5.593 20 Si 0.801 3.199 21 H -0.192 1.192 22 H -0.223 1.223 23 H -0.214 1.214 24 C -0.088 4.088 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.246 0.754 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.009 0.991 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.158 0.842 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.058 -26.341 8.396 28.797 hybrid contribution -0.015 1.994 1.476 2.481 sum -8.074 -24.347 9.872 27.485 Atomic orbital electron populations 1.21805 0.93451 1.03153 1.02226 1.20305 0.96734 0.87497 1.04919 1.24527 1.06202 1.03154 0.96673 1.82681 1.59241 1.00228 1.07040 1.24339 1.18801 0.99459 0.99255 1.17476 0.76991 0.86271 0.82339 1.90802 1.51688 1.44921 1.59157 1.45715 1.67074 1.16768 1.05940 1.21786 0.97830 0.83765 0.96324 1.21339 0.98105 0.87308 0.89189 0.92912 1.22620 0.96891 0.97971 0.97802 1.22868 1.01122 0.95167 0.97859 1.21290 0.85926 0.93247 0.94762 1.44750 1.22381 1.05170 1.61105 1.19339 0.93894 0.84335 1.39318 0.90548 1.25686 0.97068 1.00616 1.01990 1.70142 1.12793 1.24454 1.51928 0.85107 0.78197 0.79680 0.76965 1.19164 1.22257 1.21364 1.20789 0.96408 0.96767 0.94811 1.18829 1.04493 0.92997 0.98246 1.20572 1.03147 1.01397 0.89893 0.90117 0.92480 0.92994 0.88137 0.89377 0.75387 0.94453 0.94168 0.91810 0.87682 0.89820 0.90874 0.99105 0.94283 0.94263 0.84167 0.90286 0.91368 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.48 16 2 C -0.06 -0.49 5.72 29.85 0.17 -0.32 16 3 C -0.19 -2.86 5.53 24.68 0.14 -2.73 16 4 S 0.24 4.24 22.10 -56.49 -1.25 2.99 16 5 C -0.30 -8.03 6.45 24.08 0.16 -7.87 16 6 C 0.58 20.44 7.78 86.42 0.67 21.12 16 7 O -0.58 -26.05 16.84 -4.36 -0.07 -26.12 16 8 N -0.70 -22.65 5.34 -467.18 -2.49 -25.14 16 9 C 0.13 5.27 5.08 86.38 0.44 5.71 16 10 C 0.15 5.82 3.21 45.34 0.15 5.96 16 11 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 12 C -0.12 -3.58 6.14 31.78 0.20 -3.39 16 13 C -0.13 -4.58 7.08 31.98 0.23 -4.35 16 14 C 0.17 8.48 5.42 86.85 0.47 8.96 16 15 N -0.61 -31.06 3.13 -668.25 -2.09 -33.15 16 16 C -0.24 -13.55 9.75 84.03 0.82 -12.73 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 18 C -0.06 -3.47 5.47 84.86 0.46 -3.00 16 19 N -0.95 -57.64 10.56 21.65 0.23 -57.41 16 20 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C -0.05 -1.31 9.80 21.72 0.21 -1.10 16 25 C -0.13 -2.40 5.78 -21.05 -0.12 -2.52 16 26 C -0.09 -1.08 9.56 71.24 0.68 -0.40 16 27 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.51 7.81 -2.39 -0.02 0.49 16 29 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.10 0.63 7.25 -2.39 -0.02 0.62 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.41 10.19 7.47 -92.71 -0.69 9.49 16 33 H 0.04 1.75 7.90 -2.39 -0.02 1.73 16 34 H 0.04 1.86 8.06 -2.39 -0.02 1.84 16 35 H 0.06 2.02 7.80 -2.39 -0.02 2.00 16 36 H 0.10 2.36 8.14 -2.39 -0.02 2.35 16 37 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H -0.01 -0.50 8.07 -2.39 -0.02 -0.52 16 40 H 0.04 2.16 6.90 -2.38 -0.02 2.14 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.82 8.13 -2.38 -0.02 0.80 16 45 H 0.08 0.70 6.86 -2.39 -0.02 0.68 16 Total: -1.00 -74.89 377.06 2.02 -72.87 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.29 Total: 14.07 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.38 Total: 2.84 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -4.35 Total: -115.70 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.25 Total: 2.99 kcal Total: -74.89 2.02 -72.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028303422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.298 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds