Wall clock time and date at job start Tue Mar 31 2020 13:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47289 * 2 1 4 4 C 1.37468 * 122.45063 * 265.02565 * 3 2 1 5 5 C 1.36647 * 113.29945 * 179.97438 * 4 3 2 6 6 C 1.46574 * 125.46041 * 180.02562 * 5 4 3 7 7 O 1.21706 * 120.00116 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00145 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00011 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46708 * 185.08684 * 9 8 6 11 11 H 1.09004 * 109.87593 * 303.54812 * 10 9 8 12 12 C 1.54324 * 109.88817 * 64.57111 * 10 9 8 13 13 C 1.55152 * 102.94697 * 141.60745 * 12 10 9 14 14 C 1.54920 * 101.58099 * 324.50026 * 13 12 10 15 15 N 1.47031 * 109.87946 * 182.37892 * 10 9 8 16 16 C 1.36934 * 125.64805 * 61.60594 * 15 10 9 17 17 H 1.08000 * 120.00270 * 13.60042 * 16 15 10 18 18 C 1.38808 * 119.99628 * 193.60384 * 16 15 10 19 19 N 1.31611 * 120.00376 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47335 * 89.99747 * 20 18 16 22 22 H 1.48502 * 109.47347 * 209.99818 * 20 18 16 23 23 H 1.48508 * 109.47279 * 329.99842 * 20 18 16 24 24 S 1.75830 * 109.07935 * 0.26311 * 5 4 3 25 25 C 1.33816 * 122.44429 * 85.00119 * 3 2 1 26 26 C 1.50700 * 124.52728 * 0.05930 * 25 3 2 27 27 H 1.09003 * 109.47660 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47413 * 300.00131 * 1 2 3 29 29 H 1.08998 * 109.47045 * 59.99951 * 1 2 3 30 30 H 1.09003 * 109.46891 * 239.99928 * 2 1 3 31 31 H 1.09007 * 109.46874 * 120.00616 * 2 1 3 32 32 H 1.08003 * 123.34737 * 359.97438 * 4 3 2 33 33 H 0.96998 * 119.99798 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47231 * 65.08215 * 9 8 6 35 35 H 1.08997 * 109.46653 * 305.08193 * 9 8 6 36 36 H 1.08995 * 110.72073 * 259.97321 * 12 10 9 37 37 H 1.09002 * 110.71713 * 23.24396 * 12 10 9 38 38 H 1.09006 * 111.00231 * 82.56924 * 13 12 10 39 39 H 1.08992 * 111.00699 * 206.42714 * 13 12 10 40 40 H 1.08999 * 110.36427 * 278.17120 * 14 13 12 41 41 H 1.09004 * 110.36520 * 155.84509 * 14 13 12 42 42 H 0.97002 * 120.00528 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47145 * 89.99985 * 26 25 3 44 44 H 1.08995 * 109.46746 * 209.99867 * 26 25 3 45 45 H 1.09000 * 109.46581 * 329.99777 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3731 2.0827 -1.1557 5 6 2.8045 3.3611 -0.9392 6 6 3.2324 4.3016 -1.9788 7 8 3.2210 3.9631 -3.1478 8 7 3.6393 5.5410 -1.6401 9 6 4.0664 6.4813 -2.6792 10 6 4.5944 7.7594 -2.0246 11 1 3.8305 8.1855 -1.3742 12 6 5.8643 7.4442 -1.2063 13 6 6.7620 8.6824 -1.4669 14 6 6.4148 9.0139 -2.9399 15 7 4.9728 8.7321 -3.0603 16 6 4.1261 9.2841 -3.9841 17 1 3.0573 9.1896 -3.8615 18 6 4.6417 9.9653 -5.0782 19 7 5.9442 10.0810 -5.2273 20 14 3.4867 10.7178 -6.3388 21 1 3.1585 12.1103 -5.9405 22 1 4.1445 10.7258 -7.6702 23 1 2.2389 9.9156 -6.4080 24 16 2.7707 3.6946 0.7868 25 6 2.1789 2.1304 1.1250 26 6 1.8697 1.6145 2.5067 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 2.3064 1.6366 -2.1370 33 1 3.6488 5.8107 -0.7084 34 1 3.2188 6.7245 -3.3198 35 1 4.8558 6.0270 -3.2780 36 1 5.6277 7.3557 -0.1460 37 1 6.3436 6.5363 -1.5727 38 1 6.4918 9.5068 -0.8069 39 1 7.8169 8.4293 -1.3617 40 1 6.9837 8.3761 -3.6164 41 1 6.6148 10.0647 -3.1496 42 1 6.3045 10.5567 -5.9921 43 1 2.7606 1.1496 2.9289 44 1 1.5563 2.4428 3.1421 45 1 1.0684 0.8779 2.4485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028305734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:10 Heat of formation + Delta-G solvation = 1.191441 kcal Electronic energy + Delta-G solvation = -24539.306259 eV Core-core repulsion = 21069.309112 eV Total energy + Delta-G solvation = -3469.997147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.70224 -38.69126 -37.54856 -34.27398 -33.12682 -32.48069 -31.79971 -29.77863 -28.91297 -27.16970 -24.95421 -24.20090 -24.11931 -22.61376 -20.55517 -20.12320 -19.60787 -18.72289 -17.96220 -16.78923 -16.38962 -15.67193 -15.23340 -14.91167 -14.75874 -14.50767 -14.37088 -14.02641 -13.82883 -13.44430 -13.32389 -13.11662 -12.96344 -12.62971 -12.30930 -12.10952 -11.93116 -11.88062 -11.70010 -11.63870 -11.31976 -11.26995 -10.95233 -10.88534 -10.78202 -10.25433 -10.11939 -9.99624 -9.86734 -9.77454 -9.67570 -8.86903 -8.68777 -8.59910 -8.50838 -6.85690 -5.76500 -3.13315 0.40139 1.30948 1.72351 2.22352 3.35420 3.35625 3.41734 3.46421 3.48269 4.48254 4.48784 4.64496 4.76286 4.95599 4.98772 5.06628 5.16903 5.32392 5.33185 5.37290 5.39572 5.49652 5.51271 5.59732 5.61752 5.64661 5.80222 5.81503 5.93385 6.04756 6.10969 6.16784 6.23974 6.27716 6.45163 6.53583 6.59048 6.68010 6.79261 7.03914 7.52102 7.60026 7.70727 7.79247 8.25003 8.38742 9.17203 9.77650 10.44490 11.35137 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.002759 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.440029 B =10144.769297 C =11005.301762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.119 4.119 4 C -0.053 4.053 5 C -0.255 4.255 6 C 0.582 3.418 7 O -0.531 6.531 8 N -0.717 5.717 9 C 0.109 3.891 10 C 0.152 3.848 11 H 0.038 0.962 12 C -0.127 4.127 13 C -0.148 4.148 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.234 4.234 17 H 0.076 0.924 18 C -0.002 4.002 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 S 0.194 5.806 25 C -0.201 4.201 26 C -0.085 4.085 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.392 0.608 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.075 0.925 42 H 0.254 0.746 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 -17.359 17.604 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.086 4.086 5 C -0.376 4.376 6 C 0.367 3.633 7 O -0.409 6.409 8 N -0.368 5.368 9 C -0.015 4.015 10 C 0.043 3.957 11 H 0.055 0.945 12 C -0.165 4.165 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.362 4.362 17 H 0.094 0.906 18 C -0.199 4.199 19 N -0.562 5.562 20 Si 0.741 3.259 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 S 0.463 5.537 25 C -0.321 4.321 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.226 0.774 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.988 -16.112 17.421 24.473 hybrid contribution -0.923 -0.771 -1.230 1.720 sum -6.911 -16.883 16.191 24.391 Atomic orbital electron populations 1.21758 0.94804 1.01626 1.02344 1.20236 0.95964 0.91188 1.02851 1.18635 1.04723 0.98412 0.91360 1.20604 0.96278 0.91929 0.99773 1.24662 1.15569 1.00348 0.96974 1.16986 0.77715 0.81377 0.87228 1.90841 1.54544 1.77140 1.18412 1.46035 1.66449 1.13127 1.11184 1.22312 1.00173 0.89137 0.89915 1.21132 0.94742 0.88450 0.91379 0.94457 1.22617 0.96801 0.98739 0.98373 1.23009 0.97937 0.96839 1.00907 1.21488 0.83815 1.01129 0.88900 1.44490 1.06043 1.45227 1.35479 1.18994 0.88793 1.28669 0.99768 0.90595 1.24899 0.96002 1.01249 0.97722 1.69932 1.09838 1.46029 1.30400 0.86139 0.79814 0.78961 0.80980 1.21524 1.21578 1.20499 1.82957 1.60459 1.11140 0.99138 1.23976 1.08265 0.99568 1.00278 1.20389 1.02476 1.01436 0.89996 0.92373 0.92629 0.92364 0.90826 0.91027 0.83115 0.77428 0.91251 0.91279 0.92398 0.91786 0.92266 0.92308 0.95661 0.90690 0.93586 0.90549 0.91160 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.83 37.16 0.37 -0.64 16 2 C -0.06 -0.47 5.54 -27.88 -0.15 -0.63 16 3 C -0.12 -1.18 5.04 -106.46 -0.54 -1.72 16 4 C -0.05 -0.66 9.78 -40.44 -0.40 -1.05 16 5 C -0.26 -3.48 6.45 -36.80 -0.24 -3.72 16 6 C 0.58 9.99 7.78 -12.90 -0.10 9.89 16 7 O -0.53 -11.22 16.84 5.18 0.09 -11.13 16 8 N -0.72 -11.60 5.32 -61.65 -0.33 -11.92 16 9 C 0.11 2.17 5.07 -4.04 -0.02 2.15 16 10 C 0.15 3.02 3.22 -66.95 -0.22 2.81 16 11 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 12 C -0.13 -2.15 6.10 -24.90 -0.15 -2.30 16 13 C -0.15 -2.72 7.09 -24.58 -0.17 -2.90 16 14 C 0.17 4.10 5.43 -2.52 -0.01 4.08 16 15 N -0.59 -14.65 3.13 -162.56 -0.51 -15.16 16 16 C -0.23 -6.43 9.76 -15.06 -0.15 -6.58 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C 0.00 -0.04 5.47 -17.44 -0.10 -0.14 16 19 N -0.92 -26.73 10.53 55.49 0.58 -26.15 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 S 0.19 1.97 22.10 -107.50 -2.38 -0.41 16 25 C -0.20 -1.85 6.28 -35.86 -0.23 -2.08 16 26 C -0.08 -0.52 9.71 36.01 0.35 -0.17 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.36 7.25 -51.93 -0.38 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.07 0.45 7.46 -51.92 -0.39 0.06 16 32 H 0.15 1.88 8.06 -52.48 -0.42 1.45 16 33 H 0.39 5.24 7.45 -40.82 -0.30 4.93 16 34 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 35 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.07 1.99 6.85 -51.93 -0.36 1.63 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.41 6.40 -51.93 -0.33 0.08 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -32.07 376.06 -10.83 -42.91 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.18 Total: 1.99 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.75 Total: -2.99 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.25 Total: -53.24 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.07 -10.83 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028305734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.099 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds