Wall clock time and date at job start Tue Mar 31 2020 13:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46973 * 2 1 4 4 C 1.37471 * 122.44829 * 264.96886 * 3 2 1 5 5 C 1.36645 * 113.29947 * 180.02562 * 4 3 2 6 6 C 1.46584 * 125.45823 * 180.26677 * 5 4 3 7 7 O 1.21703 * 119.99907 * 359.72014 * 6 5 4 8 8 N 1.34777 * 119.99887 * 179.72855 * 6 5 4 9 9 C 1.46501 * 120.00216 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47246 * 185.91937 * 9 8 6 11 11 H 1.08999 * 109.87092 * 300.87781 * 10 9 8 12 12 C 1.54321 * 109.87974 * 179.86478 * 10 9 8 13 13 C 1.55158 * 102.94114 * 218.38887 * 12 10 9 14 14 C 1.54906 * 101.58184 * 35.50521 * 13 12 10 15 15 N 1.47015 * 109.88322 * 62.05626 * 10 9 8 16 16 C 1.36946 * 125.65020 * 298.33820 * 15 10 9 17 17 H 1.07995 * 119.99416 * 335.95387 * 16 15 10 18 18 C 1.38812 * 120.00146 * 155.95443 * 16 15 10 19 19 N 1.31614 * 119.99968 * 159.48110 * 18 16 15 20 20 Si 1.86802 * 119.99762 * 339.47934 * 18 16 15 21 21 H 1.48506 * 109.47041 * 84.66086 * 20 18 16 22 22 H 1.48502 * 109.47076 * 204.65650 * 20 18 16 23 23 H 1.48494 * 109.47319 * 324.65844 * 20 18 16 24 24 S 1.75826 * 109.08137 * 0.02562 * 5 4 3 25 25 C 1.33812 * 122.45073 * 85.00318 * 3 2 1 26 26 C 1.50702 * 124.52465 * 0.02562 * 25 3 2 27 27 H 1.08997 * 109.47060 * 60.00332 * 1 2 3 28 28 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46938 * 300.00380 * 1 2 3 30 30 H 1.09000 * 109.47455 * 239.99614 * 2 1 3 31 31 H 1.09005 * 109.46912 * 119.99972 * 2 1 3 32 32 H 1.08006 * 123.35013 * 0.05010 * 4 3 2 33 33 H 0.97006 * 119.99612 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46415 * 305.92161 * 9 8 6 35 35 H 1.08998 * 109.47091 * 65.91540 * 9 8 6 36 36 H 1.09000 * 110.72411 * 336.75553 * 12 10 9 37 37 H 1.09002 * 110.72158 * 100.02864 * 12 10 9 38 38 H 1.09000 * 111.00254 * 153.57967 * 13 12 10 39 39 H 1.08997 * 111.00396 * 277.43025 * 13 12 10 40 40 H 1.08994 * 110.36933 * 81.82761 * 14 13 12 41 41 H 1.09001 * 110.36580 * 204.04595 * 14 13 12 42 42 H 0.96997 * 120.00084 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.46954 * 179.97438 * 26 25 3 44 44 H 1.09004 * 109.46519 * 299.98769 * 26 25 3 45 45 H 1.08998 * 109.47120 * 59.98882 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3741 2.0823 -1.1556 5 6 2.8063 3.3604 -0.9391 6 6 3.2306 4.3022 -1.9792 7 8 3.2195 3.9635 -3.1480 8 7 3.6331 5.5432 -1.6409 9 6 4.0566 6.4848 -2.6804 10 6 4.5993 7.7568 -2.0259 11 1 3.8283 8.2111 -1.4035 12 6 5.0516 8.7543 -3.1130 13 6 6.3358 9.3751 -2.5024 14 6 6.9416 8.1622 -1.7531 15 7 5.7795 7.4351 -1.2104 16 6 5.7965 6.5990 -0.1260 17 1 4.8895 6.4201 0.4322 18 6 6.9797 5.9813 0.2557 19 7 7.1156 5.5199 1.4808 20 14 8.3787 5.8051 -0.9695 21 1 9.1890 7.0496 -0.9779 22 1 9.2372 4.6581 -0.5789 23 1 7.8222 5.5676 -2.3256 24 16 2.7654 3.6966 0.7862 25 6 2.1789 2.1306 1.1249 26 6 1.8691 1.6149 2.5066 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3072 1.6364 -2.1370 33 1 3.6416 5.8132 -0.7092 34 1 4.8372 6.0275 -3.2884 35 1 3.2046 6.7361 -3.3119 36 1 5.2795 8.2340 -4.0432 37 1 4.2923 9.5197 -3.2741 38 1 7.0089 9.7276 -3.2838 39 1 6.0894 10.1793 -1.8091 40 1 7.4968 7.5281 -2.4442 41 1 7.5903 8.5007 -0.9453 42 1 7.9422 5.0880 1.7474 43 1 2.0768 2.3939 3.2401 44 1 0.8172 1.3343 2.5622 45 1 2.4892 0.7436 2.7168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028305735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:14 Heat of formation + Delta-G solvation = 5.198534 kcal Electronic energy + Delta-G solvation = -25485.110088 eV Core-core repulsion = 22015.286701 eV Total energy + Delta-G solvation = -3469.823386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.38946 -38.46590 -37.69389 -33.94260 -32.78396 -32.66901 -31.46901 -30.01812 -29.58540 -27.02043 -24.99590 -23.97220 -23.84453 -22.41576 -21.05603 -19.97867 -19.54806 -18.36349 -17.59322 -16.85323 -16.13732 -15.62515 -15.23606 -15.09596 -14.66365 -14.46190 -14.02086 -13.93156 -13.42006 -13.26027 -13.15362 -13.02888 -12.73946 -12.61565 -12.56729 -12.32264 -11.92376 -11.72524 -11.53952 -11.30027 -11.28290 -11.19159 -10.98135 -10.95125 -10.71196 -10.53401 -10.38542 -10.07588 -10.00514 -9.57676 -9.44532 -8.74737 -8.50888 -8.25816 -8.08517 -7.09032 -6.03351 -3.37400 0.83905 1.80184 2.21838 2.60198 3.31731 3.46535 3.50981 3.64755 3.82292 4.49800 4.86331 4.87274 4.96239 5.09766 5.16791 5.23255 5.29462 5.33270 5.34957 5.40144 5.51147 5.55100 5.68080 5.70391 5.79910 5.81938 5.86182 5.89626 5.95377 6.07342 6.08485 6.17179 6.19071 6.23165 6.30877 6.36816 6.54298 6.62686 6.66137 6.75276 6.81319 7.04282 7.64529 8.10109 8.21504 8.68249 8.76451 9.60213 10.11940 11.11551 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.004195 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.626133 B = 6672.482989 C = 7522.059441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.126 4.126 4 C -0.060 4.060 5 C -0.259 4.259 6 C 0.586 3.414 7 O -0.553 6.553 8 N -0.697 5.697 9 C 0.115 3.885 10 C 0.144 3.856 11 H 0.050 0.950 12 C -0.123 4.123 13 C -0.131 4.131 14 C 0.112 3.888 15 N -0.602 5.602 16 C -0.245 4.245 17 H 0.087 0.913 18 C 0.034 3.966 19 N -0.900 5.900 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.303 1.303 23 H -0.276 1.276 24 S 0.241 5.759 25 C -0.212 4.212 26 C -0.080 4.080 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.407 0.593 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.058 0.942 42 H 0.264 0.736 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 -3.486 -1.283 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.094 4.094 5 C -0.380 4.380 6 C 0.371 3.629 7 O -0.435 6.435 8 N -0.349 5.349 9 C -0.011 4.011 10 C 0.037 3.963 11 H 0.067 0.933 12 C -0.161 4.161 13 C -0.169 4.169 14 C -0.012 4.012 15 N -0.328 5.328 16 C -0.372 4.372 17 H 0.104 0.896 18 C -0.166 4.166 19 N -0.542 5.542 20 Si 0.712 3.288 21 H -0.212 1.212 22 H -0.231 1.231 23 H -0.201 1.201 24 S 0.512 5.488 25 C -0.332 4.332 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.246 0.754 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.785 -2.521 -0.961 11.118 hybrid contribution 0.763 -1.454 -1.104 1.978 sum -10.023 -3.975 -2.065 10.978 Atomic orbital electron populations 1.21726 0.95121 1.01262 1.02170 1.20180 0.95684 0.91550 1.02557 1.18513 1.05686 0.98223 0.91440 1.20461 0.97469 0.92010 0.99436 1.24615 1.15303 1.00430 0.97684 1.16953 0.77369 0.81455 0.87074 1.90746 1.56441 1.77584 1.18688 1.45944 1.64645 1.12368 1.11935 1.21969 0.98280 0.90630 0.90214 1.21340 0.91280 0.92126 0.91592 0.93263 1.22515 0.97801 0.97893 0.97925 1.22718 0.96775 0.98153 0.99266 1.21933 0.91456 0.91495 0.96354 1.44871 1.03768 1.52149 1.31970 1.18347 0.97406 1.20534 1.00937 0.89594 1.25050 0.97653 0.97743 0.96174 1.69794 1.26923 1.41684 1.15830 0.86964 0.82568 0.76707 0.82566 1.21185 1.23089 1.20138 1.83533 1.57513 1.09469 0.98317 1.24089 1.08178 1.00765 1.00129 1.20318 1.01977 1.01357 0.90165 0.92562 0.92669 0.92698 0.91184 0.91206 0.83637 0.75378 0.91696 0.92721 0.91338 0.91251 0.91705 0.91210 0.95899 0.92384 0.92628 0.91326 0.90744 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.06 -0.65 5.83 -27.88 -0.16 -0.81 16 3 C -0.13 -1.77 5.04 -106.45 -0.54 -2.30 16 4 C -0.06 -0.99 9.78 -40.44 -0.40 -1.39 16 5 C -0.26 -4.79 6.45 -36.79 -0.24 -5.03 16 6 C 0.59 12.24 7.78 -12.89 -0.10 12.14 16 7 O -0.55 -12.78 16.83 5.19 0.09 -12.69 16 8 N -0.70 -14.11 4.80 -61.65 -0.30 -14.40 16 9 C 0.11 2.20 5.18 -4.04 -0.02 2.17 16 10 C 0.14 2.66 3.34 -66.96 -0.22 2.43 16 11 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 12 C -0.12 -1.85 6.48 -24.90 -0.16 -2.01 16 13 C -0.13 -2.07 7.08 -24.58 -0.17 -2.24 16 14 C 0.11 2.35 4.73 -2.53 -0.01 2.34 16 15 N -0.60 -13.56 2.87 -162.58 -0.47 -14.03 16 16 C -0.25 -6.35 8.88 -15.06 -0.13 -6.48 16 17 H 0.09 2.28 6.55 -52.49 -0.34 1.94 16 18 C 0.03 0.95 5.45 -17.43 -0.09 0.85 16 19 N -0.90 -26.20 13.97 55.49 0.78 -25.43 16 20 Si 0.88 22.59 24.33 -169.99 -4.14 18.46 16 21 H -0.28 -7.01 6.68 56.52 0.38 -6.63 16 22 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 23 H -0.28 -7.20 6.75 56.52 0.38 -6.82 16 24 S 0.24 3.98 22.08 -107.50 -2.37 1.60 16 25 C -0.21 -2.98 6.28 -35.86 -0.23 -3.21 16 26 C -0.08 -0.86 9.44 36.01 0.34 -0.52 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.50 7.41 -51.93 -0.38 0.11 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 31 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 32 H 0.15 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.41 8.25 5.06 -40.82 -0.21 8.05 16 34 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.52 5.45 -51.93 -0.28 0.23 16 41 H 0.06 1.29 7.17 -51.93 -0.37 0.91 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 44 H 0.07 0.66 7.41 -51.93 -0.38 0.28 16 45 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -31.46 367.02 -9.65 -41.11 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.01 Total: 4.89 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.77 Total: -5.04 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.01 Total: -53.86 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.14 Total: 18.46 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -2.37 Total: 1.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.46 -9.65 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028305735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.309 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds