Wall clock time and date at job start Tue Mar 31 2020 13:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46973 * 2 1 4 4 C 1.37471 * 122.44829 * 264.96886 * 3 2 1 5 5 C 1.36645 * 113.29947 * 180.02562 * 4 3 2 6 6 C 1.46584 * 125.45823 * 180.26677 * 5 4 3 7 7 O 1.21703 * 119.99907 * 359.72014 * 6 5 4 8 8 N 1.34777 * 119.99887 * 179.72855 * 6 5 4 9 9 C 1.46501 * 120.00216 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47246 * 185.91937 * 9 8 6 11 11 H 1.08999 * 109.87092 * 300.87781 * 10 9 8 12 12 C 1.54321 * 109.87974 * 179.86478 * 10 9 8 13 13 C 1.55158 * 102.94114 * 218.38887 * 12 10 9 14 14 C 1.54906 * 101.58184 * 35.50521 * 13 12 10 15 15 N 1.47015 * 109.88322 * 62.05626 * 10 9 8 16 16 C 1.36946 * 125.65020 * 298.33820 * 15 10 9 17 17 H 1.07995 * 119.99416 * 335.95387 * 16 15 10 18 18 C 1.38812 * 120.00146 * 155.95443 * 16 15 10 19 19 N 1.31614 * 119.99968 * 159.48110 * 18 16 15 20 20 Si 1.86802 * 119.99762 * 339.47934 * 18 16 15 21 21 H 1.48506 * 109.47041 * 84.66086 * 20 18 16 22 22 H 1.48502 * 109.47076 * 204.65650 * 20 18 16 23 23 H 1.48494 * 109.47319 * 324.65844 * 20 18 16 24 24 S 1.75826 * 109.08137 * 0.02562 * 5 4 3 25 25 C 1.33812 * 122.45073 * 85.00318 * 3 2 1 26 26 C 1.50702 * 124.52465 * 0.02562 * 25 3 2 27 27 H 1.08997 * 109.47060 * 60.00332 * 1 2 3 28 28 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46938 * 300.00380 * 1 2 3 30 30 H 1.09000 * 109.47455 * 239.99614 * 2 1 3 31 31 H 1.09005 * 109.46912 * 119.99972 * 2 1 3 32 32 H 1.08006 * 123.35013 * 0.05010 * 4 3 2 33 33 H 0.97006 * 119.99612 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46415 * 305.92161 * 9 8 6 35 35 H 1.08998 * 109.47091 * 65.91540 * 9 8 6 36 36 H 1.09000 * 110.72411 * 336.75553 * 12 10 9 37 37 H 1.09002 * 110.72158 * 100.02864 * 12 10 9 38 38 H 1.09000 * 111.00254 * 153.57967 * 13 12 10 39 39 H 1.08997 * 111.00396 * 277.43025 * 13 12 10 40 40 H 1.08994 * 110.36933 * 81.82761 * 14 13 12 41 41 H 1.09001 * 110.36580 * 204.04595 * 14 13 12 42 42 H 0.96997 * 120.00084 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.46954 * 179.97438 * 26 25 3 44 44 H 1.09004 * 109.46519 * 299.98769 * 26 25 3 45 45 H 1.08998 * 109.47120 * 59.98882 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3741 2.0823 -1.1556 5 6 2.8063 3.3604 -0.9391 6 6 3.2306 4.3022 -1.9792 7 8 3.2195 3.9635 -3.1480 8 7 3.6331 5.5432 -1.6409 9 6 4.0566 6.4848 -2.6804 10 6 4.5993 7.7568 -2.0259 11 1 3.8283 8.2111 -1.4035 12 6 5.0516 8.7543 -3.1130 13 6 6.3358 9.3751 -2.5024 14 6 6.9416 8.1622 -1.7531 15 7 5.7795 7.4351 -1.2104 16 6 5.7965 6.5990 -0.1260 17 1 4.8895 6.4201 0.4322 18 6 6.9797 5.9813 0.2557 19 7 7.1156 5.5199 1.4808 20 14 8.3787 5.8051 -0.9695 21 1 9.1890 7.0496 -0.9779 22 1 9.2372 4.6581 -0.5789 23 1 7.8222 5.5676 -2.3256 24 16 2.7654 3.6966 0.7862 25 6 2.1789 2.1306 1.1249 26 6 1.8691 1.6149 2.5066 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3072 1.6364 -2.1370 33 1 3.6416 5.8132 -0.7092 34 1 4.8372 6.0275 -3.2884 35 1 3.2046 6.7361 -3.3119 36 1 5.2795 8.2340 -4.0432 37 1 4.2923 9.5197 -3.2741 38 1 7.0089 9.7276 -3.2838 39 1 6.0894 10.1793 -1.8091 40 1 7.4968 7.5281 -2.4442 41 1 7.5903 8.5007 -0.9453 42 1 7.9422 5.0880 1.7474 43 1 2.0768 2.3939 3.2401 44 1 0.8172 1.3343 2.5622 45 1 2.4892 0.7436 2.7168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028305735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:13 Heat of formation + Delta-G solvation = -14.072067 kcal Electronic energy + Delta-G solvation = -25485.945724 eV Core-core repulsion = 22015.286701 eV Total energy + Delta-G solvation = -3470.659022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92682 -39.78968 -39.17410 -35.56222 -34.63948 -33.84392 -32.42459 -31.79794 -31.07622 -28.23540 -26.55989 -25.63925 -24.83836 -23.77816 -22.46830 -21.57205 -20.98307 -19.67109 -19.07877 -18.56134 -17.53230 -17.24624 -16.92586 -16.71853 -16.12867 -15.67881 -15.21519 -15.15185 -15.01205 -14.91322 -14.46566 -14.32062 -14.16628 -14.08930 -13.58404 -13.44429 -13.25801 -13.04219 -12.88719 -12.83132 -12.77536 -12.56382 -12.39305 -12.31199 -12.06564 -11.80100 -11.79278 -11.62383 -11.51054 -11.33854 -11.11955 -10.78005 -10.10410 -9.58333 -9.33109 -9.00202 -8.16690 -5.43785 -0.46977 0.51647 0.97262 1.23794 1.34789 1.35450 1.40848 2.11062 2.29533 2.40331 3.11052 3.28216 3.77556 3.84234 3.86274 3.97479 4.10725 4.16128 4.17052 4.29351 4.40572 4.41953 4.54162 4.60787 4.64199 4.68946 4.71491 4.76926 4.79498 4.97134 4.99074 5.00814 5.01951 5.08568 5.13400 5.16823 5.26094 5.36291 5.45285 5.46834 5.47733 5.57466 5.72477 6.11072 6.49666 6.77109 7.11950 7.55863 8.15190 9.01618 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.004195 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.626133 B = 6672.482989 C = 7522.059441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.052 4.052 5 C -0.300 4.300 6 C 0.580 3.420 7 O -0.586 6.586 8 N -0.701 5.701 9 C 0.115 3.885 10 C 0.140 3.860 11 H 0.061 0.939 12 C -0.113 4.113 13 C -0.116 4.116 14 C 0.101 3.899 15 N -0.619 5.619 16 C -0.216 4.216 17 H 0.075 0.925 18 C -0.017 4.017 19 N -0.939 5.939 20 Si 0.923 3.077 21 H -0.271 1.271 22 H -0.316 1.316 23 H -0.288 1.288 24 S 0.210 5.790 25 C -0.192 4.192 26 C -0.082 4.082 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.406 0.594 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.009 0.991 41 H 0.040 0.960 42 H 0.259 0.741 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 -3.219 -1.610 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.420 4.420 6 C 0.368 3.632 7 O -0.470 6.470 8 N -0.351 5.351 9 C -0.010 4.010 10 C 0.033 3.967 11 H 0.079 0.921 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.024 4.024 15 N -0.345 5.345 16 C -0.344 4.344 17 H 0.092 0.908 18 C -0.213 4.213 19 N -0.585 5.585 20 Si 0.755 3.245 21 H -0.197 1.197 22 H -0.245 1.245 23 H -0.214 1.214 24 S 0.480 5.520 25 C -0.312 4.312 26 C -0.141 4.141 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.244 0.756 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.026 0.974 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.335 -2.206 -1.319 12.600 hybrid contribution 1.120 -1.569 -0.995 2.169 sum -11.215 -3.775 -2.314 12.057 Atomic orbital electron populations 1.21707 0.93754 1.02573 1.01904 1.20289 0.96758 0.89136 1.03628 1.18823 1.05347 0.99856 0.90348 1.20743 0.95986 0.91416 1.00516 1.24481 1.18399 1.01075 0.98018 1.17326 0.76811 0.81807 0.87272 1.90702 1.58105 1.78195 1.20003 1.46031 1.64441 1.12624 1.12045 1.22011 0.98438 0.90466 0.90070 1.21596 0.90023 0.92571 0.92470 0.92101 1.22560 0.98340 0.97674 0.96543 1.22680 0.97107 0.95996 0.99649 1.22042 0.91005 0.93360 0.95987 1.45088 1.05826 1.51678 1.31905 1.18415 0.96342 1.18788 1.00896 0.90792 1.25459 0.99480 0.99299 0.97072 1.69876 1.27279 1.44324 1.17049 0.86275 0.81158 0.76584 0.80490 1.19707 1.24517 1.21443 1.83585 1.58733 1.12119 0.97528 1.24549 1.05864 0.98872 1.01939 1.20518 1.03909 1.01863 0.87764 0.93601 0.90580 0.92234 0.90823 0.89490 0.83542 0.75570 0.94402 0.90246 0.90747 0.87341 0.88805 0.89918 0.97352 0.94211 0.93193 0.91060 0.88080 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.52 16 2 C -0.06 -1.12 5.83 29.85 0.17 -0.94 16 3 C -0.13 -3.54 5.04 -21.05 -0.11 -3.65 16 4 C -0.05 -1.72 9.78 21.72 0.21 -1.51 16 5 C -0.30 -11.40 6.45 24.08 0.16 -11.24 16 6 C 0.58 25.09 7.78 86.42 0.67 25.77 16 7 O -0.59 -27.97 16.83 -4.36 -0.07 -28.04 16 8 N -0.70 -29.03 4.80 -467.17 -2.24 -31.27 16 9 C 0.12 4.38 5.18 86.38 0.45 4.83 16 10 C 0.14 4.93 3.34 45.34 0.15 5.08 16 11 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 12 C -0.11 -2.99 6.48 31.78 0.21 -2.78 16 13 C -0.12 -3.28 7.08 31.99 0.23 -3.05 16 14 C 0.10 4.10 4.73 86.85 0.41 4.51 16 15 N -0.62 -27.69 2.87 -668.28 -1.92 -29.61 16 16 C -0.22 -11.37 8.88 84.03 0.75 -10.62 16 17 H 0.07 4.05 6.55 -2.91 -0.02 4.03 16 18 C -0.02 -0.97 5.45 84.86 0.46 -0.51 16 19 N -0.94 -56.47 13.97 21.65 0.30 -56.17 16 20 Si 0.92 47.92 24.33 68.60 1.67 49.59 16 21 H -0.27 -13.21 6.68 99.48 0.66 -12.55 16 22 H -0.32 -16.90 7.11 99.48 0.71 -16.19 16 23 H -0.29 -15.27 6.75 99.48 0.67 -14.60 16 24 S 0.21 7.07 22.08 -56.49 -1.25 5.82 16 25 C -0.19 -5.17 6.28 24.68 0.15 -5.01 16 26 C -0.08 -1.54 9.44 71.24 0.67 -0.87 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.88 7.41 -2.39 -0.02 0.86 16 30 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.09 1.39 7.45 -2.38 -0.02 1.37 16 32 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.41 16.96 5.06 -92.70 -0.47 16.49 16 34 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 1.92 7.85 -2.39 -0.02 1.90 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.01 0.39 5.45 -2.39 -0.01 0.37 16 41 H 0.04 1.74 7.17 -2.39 -0.02 1.73 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 44 H 0.10 1.42 7.41 -2.39 -0.02 1.40 16 45 H 0.09 1.50 7.92 -2.39 -0.02 1.48 16 Total: -1.00 -71.15 367.02 2.24 -68.92 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.45 Total: 22.30 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.30 Total: -1.53 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -3.86 Total: -117.05 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.07 Total: -28.04 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.67 Total: 49.59 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.25 Total: 5.82 kcal Total: -71.15 2.24 -68.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028305735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.847 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds