Wall clock time and date at job start Tue Mar 31 2020 13:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50699 * 109.46810 * 120.00076 * 2 1 3 5 5 C 1.37476 * 123.35373 * 305.60903 * 4 2 1 6 6 C 1.33820 * 115.10263 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95398 * 359.76193 * 6 5 4 8 8 C 1.36654 * 123.35376 * 125.59105 * 4 2 1 9 9 C 1.46585 * 125.45360 * 359.97438 * 8 4 2 10 10 O 1.21701 * 119.99944 * 355.27491 * 9 8 4 11 11 N 1.34779 * 119.99757 * 175.27316 * 9 8 4 12 12 C 1.46504 * 119.99920 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47052 * 185.07945 * 12 11 9 14 14 H 1.09004 * 109.99899 * 304.18626 * 13 12 11 15 15 C 1.54327 * 109.88439 * 65.27847 * 13 12 11 16 16 C 1.55158 * 102.94268 * 141.61023 * 15 13 12 17 17 C 1.54910 * 101.58210 * 324.49933 * 16 15 13 18 18 N 1.47024 * 109.88448 * 183.08613 * 13 12 11 19 19 C 1.36937 * 125.64299 * 61.61809 * 18 13 12 20 20 H 1.08005 * 120.00323 * 11.81205 * 19 18 13 21 21 C 1.38811 * 120.00046 * 191.80387 * 19 18 13 22 22 N 1.31619 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00348 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47089 * 90.00428 * 23 21 19 25 25 H 1.48501 * 109.47103 * 210.00291 * 23 21 19 26 26 H 1.48503 * 109.47165 * 330.00374 * 23 21 19 27 27 H 1.09003 * 109.47035 * 299.99964 * 1 2 3 28 28 H 1.08998 * 109.46676 * 60.00154 * 1 2 3 29 29 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47035 * 240.00035 * 2 1 3 31 31 H 1.09003 * 109.46882 * 59.99620 * 3 2 1 32 32 H 1.09001 * 109.46921 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47126 * 300.00290 * 3 2 1 34 34 H 1.07999 * 122.44774 * 359.97438 * 5 4 2 35 35 H 1.07997 * 124.52058 * 180.02562 * 6 5 4 36 36 H 0.96997 * 119.99987 * 0.02562 * 11 9 8 37 37 H 1.08991 * 109.46823 * 65.07601 * 12 11 9 38 38 H 1.09000 * 109.46997 * 305.07919 * 12 11 9 39 39 H 1.09004 * 110.72136 * 259.97182 * 15 13 12 40 40 H 1.08999 * 110.71899 * 23.24691 * 15 13 12 41 41 H 1.08998 * 111.00535 * 82.57193 * 16 15 13 42 42 H 1.08996 * 111.00668 * 206.42238 * 16 15 13 43 43 H 1.08995 * 110.36924 * 155.84723 * 17 16 15 44 44 H 1.08998 * 110.36522 * 278.06177 * 17 16 15 45 45 H 0.97006 * 120.00237 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6538 -0.3697 2.5074 6 6 2.2002 -1.1109 3.4784 7 16 3.2335 -2.3027 2.8280 8 6 2.9091 -1.7578 1.1881 9 6 3.4820 -2.3382 -0.0299 10 8 3.1183 -1.9426 -1.1219 11 7 4.4116 -3.3101 0.0595 12 6 4.9838 -3.8906 -1.1578 13 6 5.9110 -5.0485 -0.7834 14 1 6.6742 -4.7043 -0.0854 15 6 5.0929 -6.1908 -0.1451 16 6 5.7680 -7.4645 -0.7189 17 6 6.1444 -7.0001 -2.1480 18 7 6.5475 -5.5906 -1.9928 19 6 7.3770 -4.9002 -2.8358 20 1 7.7653 -3.9363 -2.5416 21 6 7.7190 -5.4394 -4.0683 22 7 7.2456 -6.6139 -4.4270 23 14 8.8511 -4.4981 -5.2179 24 1 10.2610 -4.8736 -4.9413 25 1 8.5168 -4.8328 -6.6256 26 1 8.6756 -3.0395 -5.0008 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 0.9658 0.4373 2.7120 35 1 2.0091 -0.9757 4.5327 36 1 4.7012 -3.6256 0.9298 37 1 5.5514 -3.1285 -1.6916 38 1 4.1812 -4.2597 -1.7963 39 1 5.1777 -6.1656 0.9413 40 1 4.0487 -6.1359 -0.4529 41 1 6.6577 -7.7268 -0.1464 42 1 5.0663 -8.2980 -0.7511 43 1 6.9748 -7.5919 -2.5329 44 1 5.2834 -7.0793 -2.8117 45 1 7.4843 -6.9906 -5.2885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028334081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:25 Heat of formation + Delta-G solvation = 8.090460 kcal Electronic energy + Delta-G solvation = -25070.534716 eV Core-core repulsion = 21600.836733 eV Total energy + Delta-G solvation = -3469.697983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94034 -38.43827 -37.45119 -34.42836 -34.01882 -32.49273 -30.38671 -29.47700 -28.42926 -27.18060 -25.36247 -24.60208 -23.59351 -21.86285 -21.10495 -20.21263 -19.77649 -18.68311 -17.72405 -16.76375 -16.26174 -15.69873 -15.34977 -15.05753 -14.69735 -14.27283 -14.11020 -13.87915 -13.70793 -13.64187 -13.29748 -13.01293 -12.68231 -12.59024 -12.18455 -12.07271 -11.90150 -11.74756 -11.60292 -11.33347 -11.19028 -11.04154 -10.92453 -10.79289 -10.77448 -10.25903 -10.10738 -9.93244 -9.84392 -9.69412 -9.44087 -9.02053 -8.66716 -8.60287 -8.57789 -6.87366 -5.75877 -3.12869 0.42192 1.35179 1.74086 2.27844 3.32361 3.36249 3.41719 3.46270 3.48001 4.48288 4.64183 4.81653 4.90548 5.03056 5.17777 5.24431 5.32324 5.38815 5.49234 5.51223 5.55561 5.59374 5.61447 5.75914 5.79996 5.86222 5.97217 6.02187 6.05578 6.12506 6.20447 6.21848 6.23453 6.44566 6.47062 6.54765 6.65188 6.72865 6.79457 7.03383 7.53004 7.58800 7.70117 7.79627 8.25094 8.39236 9.17035 9.77565 10.43699 11.35014 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.003267 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.923854 B = 8568.464555 C = 9652.211833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.015 4.015 5 C -0.142 4.142 6 C -0.234 4.234 7 S 0.190 5.810 8 C -0.262 4.262 9 C 0.585 3.415 10 O -0.526 6.526 11 N -0.717 5.717 12 C 0.110 3.890 13 C 0.151 3.849 14 H 0.038 0.962 15 C -0.127 4.127 16 C -0.148 4.148 17 C 0.170 3.830 18 N -0.589 5.589 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.917 5.917 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.392 0.608 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.024 0.976 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 9.381 17.095 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.030 4.030 5 C -0.174 4.174 6 C -0.371 4.371 7 S 0.459 5.541 8 C -0.382 4.382 9 C 0.370 3.630 10 O -0.405 6.405 11 N -0.367 5.367 12 C -0.015 4.015 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.165 4.165 16 C -0.187 4.187 17 C 0.045 3.955 18 N -0.313 5.313 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.199 4.199 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.042 0.958 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.624 8.412 16.720 21.521 hybrid contribution -0.299 1.556 -0.570 1.684 sum -10.922 9.968 16.149 21.897 Atomic orbital electron populations 1.21783 0.94460 1.01818 1.01468 1.20434 0.95638 0.96018 0.96898 1.21756 1.01272 0.94965 1.01428 1.19484 0.93971 0.93679 0.95887 1.19861 1.03663 1.02743 0.91105 1.25202 1.04976 1.02545 1.04413 1.83009 1.42941 1.31636 0.96519 1.24577 1.10173 1.06313 0.97174 1.16959 0.79353 0.79576 0.87107 1.90701 1.61046 1.61121 1.27622 1.46055 1.41439 1.38367 1.10864 1.22306 0.97262 0.96885 0.85064 1.21126 0.92225 0.91462 0.90901 0.94446 1.22624 0.99132 0.96248 0.98544 1.23009 0.99223 0.96065 1.00389 1.21519 0.99145 0.84959 0.89849 1.44500 1.52683 1.08074 1.26032 1.19007 1.20047 1.01746 0.95357 0.90550 1.24869 1.00521 0.97423 0.97086 1.69935 1.47604 1.17071 1.21681 0.86132 0.80118 0.79267 0.80340 1.21539 1.21578 1.20526 0.93064 0.92223 0.92678 0.85844 0.93107 0.92670 0.92194 0.84065 0.81589 0.77407 0.91224 0.91283 0.92396 0.91797 0.92269 0.92325 0.90322 0.95843 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.98 37.16 0.33 -1.06 16 2 C -0.07 -0.86 3.07 -91.77 -0.28 -1.14 16 3 C -0.14 -1.45 9.09 37.16 0.34 -1.11 16 4 C -0.02 -0.19 4.72 -105.47 -0.50 -0.69 16 5 C -0.14 -1.38 9.18 -41.41 -0.38 -1.77 16 6 C -0.23 -2.02 10.92 29.18 0.32 -1.71 16 7 S 0.19 1.86 22.17 -107.50 -2.38 -0.52 16 8 C -0.26 -3.51 6.45 -36.79 -0.24 -3.74 16 9 C 0.58 9.65 7.77 -12.89 -0.10 9.55 16 10 O -0.53 -10.37 13.98 5.19 0.07 -10.30 16 11 N -0.72 -11.27 5.33 -61.65 -0.33 -11.60 16 12 C 0.11 2.12 5.08 -4.04 -0.02 2.10 16 13 C 0.15 2.99 3.21 -66.95 -0.21 2.77 16 14 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 15 C -0.13 -2.13 6.13 -24.89 -0.15 -2.28 16 16 C -0.15 -2.71 7.09 -24.58 -0.17 -2.88 16 17 C 0.17 4.04 5.46 -2.53 -0.01 4.03 16 18 N -0.59 -14.56 3.13 -162.58 -0.51 -15.07 16 19 C -0.23 -6.37 9.76 -15.06 -0.15 -6.52 16 20 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 21 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 22 N -0.92 -26.57 10.47 55.49 0.58 -25.99 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H 0.05 0.43 7.49 -51.93 -0.39 0.04 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.12 1.91 4.95 -51.93 -0.26 1.66 16 31 H 0.05 0.45 8.01 -51.93 -0.42 0.04 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.14 1.10 7.65 -52.49 -0.40 0.70 16 35 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.39 5.13 7.48 -40.82 -0.31 4.82 16 37 H 0.07 1.52 7.90 -51.93 -0.41 1.11 16 38 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 2.08 6.72 -51.93 -0.35 1.74 16 44 H 0.02 0.61 8.11 -51.93 -0.42 0.19 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -30.96 371.87 -10.44 -41.40 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.12 Total: 4.01 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.33 Total: -4.58 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.26 Total: -52.66 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.38 Total: -0.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.96 -10.44 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028334081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.487 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds