Wall clock time and date at job start Tue Mar 31 2020 13:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50699 * 109.46810 * 120.00076 * 2 1 3 5 5 C 1.37476 * 123.35373 * 305.60903 * 4 2 1 6 6 C 1.33820 * 115.10263 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95398 * 359.76193 * 6 5 4 8 8 C 1.36654 * 123.35376 * 125.59105 * 4 2 1 9 9 C 1.46585 * 125.45360 * 359.97438 * 8 4 2 10 10 O 1.21701 * 119.99944 * 355.27491 * 9 8 4 11 11 N 1.34779 * 119.99757 * 175.27316 * 9 8 4 12 12 C 1.46504 * 119.99920 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47052 * 185.07945 * 12 11 9 14 14 H 1.09004 * 109.99899 * 304.18626 * 13 12 11 15 15 C 1.54327 * 109.88439 * 65.27847 * 13 12 11 16 16 C 1.55158 * 102.94268 * 141.61023 * 15 13 12 17 17 C 1.54910 * 101.58210 * 324.49933 * 16 15 13 18 18 N 1.47024 * 109.88448 * 183.08613 * 13 12 11 19 19 C 1.36937 * 125.64299 * 61.61809 * 18 13 12 20 20 H 1.08005 * 120.00323 * 11.81205 * 19 18 13 21 21 C 1.38811 * 120.00046 * 191.80387 * 19 18 13 22 22 N 1.31619 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00348 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47089 * 90.00428 * 23 21 19 25 25 H 1.48501 * 109.47103 * 210.00291 * 23 21 19 26 26 H 1.48503 * 109.47165 * 330.00374 * 23 21 19 27 27 H 1.09003 * 109.47035 * 299.99964 * 1 2 3 28 28 H 1.08998 * 109.46676 * 60.00154 * 1 2 3 29 29 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47035 * 240.00035 * 2 1 3 31 31 H 1.09003 * 109.46882 * 59.99620 * 3 2 1 32 32 H 1.09001 * 109.46921 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47126 * 300.00290 * 3 2 1 34 34 H 1.07999 * 122.44774 * 359.97438 * 5 4 2 35 35 H 1.07997 * 124.52058 * 180.02562 * 6 5 4 36 36 H 0.96997 * 119.99987 * 0.02562 * 11 9 8 37 37 H 1.08991 * 109.46823 * 65.07601 * 12 11 9 38 38 H 1.09000 * 109.46997 * 305.07919 * 12 11 9 39 39 H 1.09004 * 110.72136 * 259.97182 * 15 13 12 40 40 H 1.08999 * 110.71899 * 23.24691 * 15 13 12 41 41 H 1.08998 * 111.00535 * 82.57193 * 16 15 13 42 42 H 1.08996 * 111.00668 * 206.42238 * 16 15 13 43 43 H 1.08995 * 110.36924 * 155.84723 * 17 16 15 44 44 H 1.08998 * 110.36522 * 278.06177 * 17 16 15 45 45 H 0.97006 * 120.00237 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6538 -0.3697 2.5074 6 6 2.2002 -1.1109 3.4784 7 16 3.2335 -2.3027 2.8280 8 6 2.9091 -1.7578 1.1881 9 6 3.4820 -2.3382 -0.0299 10 8 3.1183 -1.9426 -1.1219 11 7 4.4116 -3.3101 0.0595 12 6 4.9838 -3.8906 -1.1578 13 6 5.9110 -5.0485 -0.7834 14 1 6.6742 -4.7043 -0.0854 15 6 5.0929 -6.1908 -0.1451 16 6 5.7680 -7.4645 -0.7189 17 6 6.1444 -7.0001 -2.1480 18 7 6.5475 -5.5906 -1.9928 19 6 7.3770 -4.9002 -2.8358 20 1 7.7653 -3.9363 -2.5416 21 6 7.7190 -5.4394 -4.0683 22 7 7.2456 -6.6139 -4.4270 23 14 8.8511 -4.4981 -5.2179 24 1 10.2610 -4.8736 -4.9413 25 1 8.5168 -4.8328 -6.6256 26 1 8.6756 -3.0395 -5.0008 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 0.9658 0.4373 2.7120 35 1 2.0091 -0.9757 4.5327 36 1 4.7012 -3.6256 0.9298 37 1 5.5514 -3.1285 -1.6916 38 1 4.1812 -4.2597 -1.7963 39 1 5.1777 -6.1656 0.9413 40 1 4.0487 -6.1359 -0.4529 41 1 6.6577 -7.7268 -0.1464 42 1 5.0663 -8.2980 -0.7511 43 1 6.9748 -7.5919 -2.5329 44 1 5.2834 -7.0793 -2.8117 45 1 7.4843 -6.9906 -5.2885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028334081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:24 Heat of formation + Delta-G solvation = -10.454288 kcal Electronic energy + Delta-G solvation = -25071.338877 eV Core-core repulsion = 21600.836733 eV Total energy + Delta-G solvation = -3470.502144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13109 -39.68092 -38.89051 -35.85073 -34.96079 -34.41778 -31.72095 -31.13132 -29.83864 -27.99988 -26.85849 -26.19265 -24.94171 -22.74501 -22.31866 -21.90573 -21.31418 -19.96763 -18.78067 -18.50695 -17.35685 -17.12730 -16.61329 -16.46658 -16.30404 -15.72517 -15.46739 -15.13608 -14.91988 -14.56351 -14.39887 -14.34200 -13.96596 -13.66875 -13.51284 -13.46749 -13.31627 -13.02692 -12.94433 -12.89499 -12.67199 -12.36961 -12.06563 -12.05719 -12.02093 -11.82186 -11.74761 -11.61470 -11.48503 -11.42990 -10.70568 -10.66810 -10.25868 -9.72302 -9.36085 -8.90200 -7.88177 -5.26275 -0.45831 0.52987 0.96934 1.42480 1.43520 1.45762 1.54035 2.06348 2.15835 2.48935 3.30032 3.65976 3.80413 3.87854 3.94503 3.94838 4.04723 4.23642 4.29305 4.31057 4.41214 4.45465 4.52168 4.69348 4.71166 4.78510 4.79602 4.92570 4.95833 4.96805 5.04863 5.11104 5.13986 5.19381 5.22514 5.31161 5.37438 5.40486 5.45837 5.52040 5.66007 5.70900 5.77736 6.21963 6.45386 7.07809 7.14121 7.74754 8.39711 9.21515 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.003267 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.923854 B = 8568.464555 C = 9652.211833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.131 4.131 4 C -0.012 4.012 5 C -0.156 4.156 6 C -0.211 4.211 7 S 0.231 5.769 8 C -0.311 4.311 9 C 0.581 3.419 10 O -0.571 6.571 11 N -0.706 5.706 12 C 0.131 3.869 13 C 0.148 3.852 14 H 0.052 0.948 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.171 3.829 18 N -0.611 5.611 19 C -0.241 4.241 20 H 0.077 0.923 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.972 3.028 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.274 1.274 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.167 0.833 35 H 0.204 0.796 36 H 0.408 0.592 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.044 0.956 44 H -0.011 1.011 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 10.517 21.257 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.028 4.028 5 C -0.186 4.186 6 C -0.348 4.348 7 S 0.500 5.500 8 C -0.431 4.431 9 C 0.369 3.631 10 O -0.453 6.453 11 N -0.357 5.357 12 C 0.005 3.995 13 C 0.040 3.960 14 H 0.069 0.931 15 C -0.152 4.152 16 C -0.171 4.171 17 C 0.046 3.954 18 N -0.335 5.335 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.253 4.253 22 N -0.594 5.594 23 Si 0.801 3.199 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.199 1.199 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.184 0.816 35 H 0.221 0.779 36 H 0.245 0.755 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.007 0.993 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.586 9.552 20.949 25.775 hybrid contribution -0.053 1.266 -1.761 2.170 sum -11.639 10.818 19.188 24.913 Atomic orbital electron populations 1.21741 0.92767 1.01497 1.02922 1.20389 0.97094 0.96562 0.95715 1.21718 1.00107 0.94196 1.02873 1.19731 0.93133 0.92976 0.97005 1.20003 1.04747 1.04042 0.89823 1.25718 1.02561 1.00531 1.06010 1.82808 1.42591 1.31370 0.93268 1.24327 1.12507 1.08315 0.97942 1.17476 0.78710 0.78950 0.87927 1.90692 1.62387 1.62379 1.29832 1.45753 1.41373 1.38371 1.10241 1.21734 0.95870 0.95911 0.85983 1.21331 0.92709 0.92595 0.89326 0.93056 1.22616 0.98208 0.93480 1.00932 1.22872 1.00486 0.97450 0.96261 1.21334 0.96423 0.84634 0.93001 1.44761 1.52939 1.08862 1.26931 1.19317 1.20012 1.01689 0.95950 0.90546 1.25638 1.02537 0.98404 0.98703 1.70143 1.49171 1.18416 1.21645 0.85172 0.78551 0.78221 0.77973 1.20745 1.22097 1.19933 0.90564 0.91788 0.93860 0.89869 0.90656 0.94423 0.91721 0.81592 0.77894 0.75508 0.94564 0.94167 0.87747 0.91784 0.90977 0.89850 0.93806 0.99287 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.98 71.98 0.65 -1.88 16 2 C -0.08 -1.89 3.07 -11.54 -0.04 -1.93 16 3 C -0.13 -2.68 9.09 71.98 0.65 -2.03 16 4 C -0.01 -0.28 4.72 -20.42 -0.10 -0.38 16 5 C -0.16 -2.46 9.18 21.08 0.19 -2.27 16 6 C -0.21 -2.65 10.92 66.82 0.73 -1.92 16 7 S 0.23 3.76 22.17 -56.49 -1.25 2.50 16 8 C -0.31 -8.07 6.45 24.08 0.16 -7.91 16 9 C 0.58 19.79 7.77 86.42 0.67 20.46 16 10 O -0.57 -24.16 13.98 -4.35 -0.06 -24.22 16 11 N -0.71 -22.30 5.33 -467.18 -2.49 -24.79 16 12 C 0.13 5.29 5.08 86.38 0.44 5.72 16 13 C 0.15 5.79 3.21 45.34 0.15 5.94 16 14 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 15 C -0.11 -3.56 6.13 31.78 0.19 -3.37 16 16 C -0.13 -4.61 7.09 31.99 0.23 -4.38 16 17 C 0.17 8.40 5.46 86.86 0.47 8.88 16 18 N -0.61 -31.07 3.13 -668.27 -2.09 -33.16 16 19 C -0.24 -13.58 9.76 84.03 0.82 -12.76 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 21 C -0.06 -3.42 5.47 84.86 0.46 -2.95 16 22 N -0.95 -57.41 10.47 21.65 0.23 -57.19 16 23 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 26 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 27 H 0.08 1.06 7.49 -2.39 -0.02 1.05 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 2.77 4.95 -2.39 -0.01 2.76 16 31 H 0.07 1.15 8.01 -2.39 -0.02 1.13 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.17 1.77 7.65 -2.91 -0.02 1.75 16 35 H 0.20 1.08 8.06 -2.91 -0.02 1.05 16 36 H 0.41 10.02 7.48 -92.71 -0.69 9.33 16 37 H 0.04 1.68 7.90 -2.39 -0.02 1.66 16 38 H 0.04 1.83 8.06 -2.39 -0.02 1.81 16 39 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.06 2.02 7.80 -2.39 -0.02 2.00 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.04 2.43 6.72 -2.39 -0.02 2.41 16 44 H -0.01 -0.60 8.11 -2.39 -0.02 -0.62 16 45 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -73.65 371.87 2.34 -71.32 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.29 Total: 17.43 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.68 Total: -0.78 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.35 Total: -115.14 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.06 Total: -24.22 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.25 Total: 2.50 kcal Total: -73.65 2.34 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028334081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.861 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds