Wall clock time and date at job start Tue Mar 31 2020 13:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47654 * 2 1 4 4 C 1.50706 * 109.47062 * 120.00290 * 2 1 3 5 5 C 1.37470 * 123.35142 * 305.56607 * 4 2 1 6 6 C 1.33815 * 115.10058 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95627 * 359.72770 * 6 5 4 8 8 C 1.36648 * 123.35171 * 125.54468 * 4 2 1 9 9 C 1.46588 * 125.46023 * 0.02562 * 8 4 2 10 10 O 1.21702 * 119.99561 * 355.29770 * 9 8 4 11 11 N 1.34772 * 119.99919 * 175.29471 * 9 8 4 12 12 C 1.46506 * 119.99714 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46900 * 184.74377 * 12 11 9 14 14 H 1.08997 * 109.99733 * 53.67378 * 13 12 11 15 15 C 1.54324 * 109.88207 * 292.57554 * 13 12 11 16 16 C 1.55272 * 103.00740 * 218.46665 * 15 13 12 17 17 C 1.54913 * 101.52798 * 35.36343 * 16 15 13 18 18 N 1.47024 * 109.88035 * 174.76659 * 13 12 11 19 19 C 1.36938 * 125.64780 * 298.34022 * 18 13 12 20 20 H 1.07993 * 119.99979 * 348.11957 * 19 18 13 21 21 C 1.38809 * 119.99631 * 168.12477 * 19 18 13 22 22 N 1.31615 * 120.00416 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99920 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47108 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47439 * 119.99804 * 23 21 19 26 26 H 1.48505 * 109.47089 * 240.00117 * 23 21 19 27 27 H 1.09006 * 109.46963 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46912 * 59.99450 * 1 2 3 29 29 H 1.08997 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47458 * 240.00089 * 2 1 3 31 31 H 1.08993 * 109.47434 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46738 * 300.00380 * 3 2 1 33 33 H 1.09006 * 109.46572 * 60.00343 * 3 2 1 34 34 H 1.07998 * 122.44802 * 359.96351 * 5 4 2 35 35 H 1.08000 * 124.51939 * 180.02562 * 6 5 4 36 36 H 0.96997 * 120.00350 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47315 * 64.74084 * 12 11 9 38 38 H 1.08997 * 109.46568 * 304.73889 * 12 11 9 39 39 H 1.08996 * 110.71826 * 336.75430 * 15 13 12 40 40 H 1.09004 * 110.71846 * 100.02836 * 15 13 12 41 41 H 1.08998 * 110.96270 * 277.34229 * 16 15 13 42 42 H 1.08998 * 111.10126 * 153.44407 * 16 15 13 43 43 H 1.08990 * 110.37162 * 204.23293 * 17 16 15 44 44 H 1.09006 * 110.36548 * 82.01350 * 17 16 15 45 45 H 0.97000 * 120.00170 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6545 -0.3692 2.5074 6 6 2.2008 -1.1106 3.4783 7 16 3.2324 -2.3038 2.8278 8 6 2.9083 -1.7584 1.1879 9 6 3.4812 -2.3389 -0.0301 10 8 3.1184 -1.9424 -1.1220 11 7 4.4098 -3.3116 0.0593 12 6 4.9828 -3.8914 -1.1580 13 6 5.9151 -5.0453 -0.7834 14 1 5.3879 -5.7604 -0.1519 15 6 7.1522 -4.5000 -0.0391 16 6 8.3070 -5.3802 -0.5892 17 6 7.8652 -5.5872 -2.0595 18 7 6.3975 -5.7137 -2.0008 19 6 5.6135 -6.3489 -2.9265 20 1 4.5772 -6.5567 -2.7050 21 6 6.1509 -6.7258 -4.1496 22 7 7.4138 -6.4722 -4.4198 23 14 5.0817 -7.5929 -5.4122 24 1 3.7099 -7.7596 -4.8684 25 1 5.0268 -6.7821 -6.6551 26 1 5.6584 -8.9271 -5.7166 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 0.9672 0.4383 2.7121 35 1 2.0101 -0.9750 4.5327 36 1 4.6993 -3.6273 0.9296 37 1 5.5468 -3.1277 -1.6936 38 1 4.1808 -4.2644 -1.7950 39 1 7.3185 -3.4511 -0.2845 40 1 7.0442 -4.6330 1.0374 41 1 8.3588 -6.3313 -0.0593 42 1 9.2601 -4.8538 -0.5382 43 1 8.3084 -6.4969 -2.4643 44 1 8.1477 -4.7262 -2.6653 45 1 7.7893 -6.7352 -5.2746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028334082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:28 Heat of formation + Delta-G solvation = 7.973870 kcal Electronic energy + Delta-G solvation = -25062.258084 eV Core-core repulsion = 21592.555045 eV Total energy + Delta-G solvation = -3469.703039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.93924 -38.43604 -37.45315 -34.42844 -34.01901 -32.49422 -30.38633 -29.47540 -28.43651 -27.18146 -25.36240 -24.60264 -23.59517 -21.86323 -21.11134 -20.22043 -19.75397 -18.69893 -17.71952 -16.77157 -16.27778 -15.70221 -15.37262 -15.02189 -14.70055 -14.26651 -14.10561 -13.89585 -13.67247 -13.65239 -13.30462 -12.97843 -12.71348 -12.55797 -12.19118 -12.08733 -11.89895 -11.77912 -11.60383 -11.36931 -11.19066 -11.03828 -10.92027 -10.81336 -10.77727 -10.23030 -10.08401 -9.90012 -9.84982 -9.69915 -9.44058 -9.02386 -8.69472 -8.60327 -8.57211 -6.87038 -5.76135 -3.12998 0.42264 1.35225 1.74142 2.27914 3.32779 3.36218 3.41434 3.46916 3.48641 4.48337 4.64205 4.81715 4.90559 5.03101 5.17841 5.24431 5.32043 5.38089 5.48385 5.51296 5.55526 5.59347 5.61389 5.75854 5.79583 5.86263 5.97035 6.01375 6.05137 6.12426 6.20492 6.21712 6.22601 6.44555 6.46962 6.54565 6.64418 6.73556 6.78556 7.03197 7.52844 7.58963 7.70196 7.79754 8.24963 8.39280 9.17110 9.77551 10.43558 11.34890 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003277 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.301818 B = 8542.678817 C = 9604.268440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.015 4.015 5 C -0.142 4.142 6 C -0.234 4.234 7 S 0.190 5.810 8 C -0.262 4.262 9 C 0.584 3.416 10 O -0.525 6.525 11 N -0.717 5.717 12 C 0.109 3.891 13 C 0.151 3.849 14 H 0.038 0.962 15 C -0.129 4.129 16 C -0.148 4.148 17 C 0.170 3.830 18 N -0.589 5.589 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.290 1.290 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.392 0.608 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.024 0.976 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 12.036 17.295 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.030 4.030 5 C -0.174 4.174 6 C -0.371 4.371 7 S 0.459 5.541 8 C -0.382 4.382 9 C 0.370 3.630 10 O -0.405 6.405 11 N -0.367 5.367 12 C -0.015 4.015 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.167 4.167 16 C -0.187 4.187 17 C 0.045 3.955 18 N -0.313 5.313 19 C -0.361 4.361 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.217 1.217 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.226 0.774 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.042 0.958 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.467 11.001 16.924 21.521 hybrid contribution -1.362 0.683 -0.633 1.650 sum -8.829 11.684 16.291 21.905 Atomic orbital electron populations 1.21781 0.94453 1.01847 1.01465 1.20434 0.95656 0.96003 0.96900 1.21754 1.01234 0.94976 1.01429 1.19483 0.93957 0.93691 0.95889 1.19859 1.03653 1.02756 0.91104 1.25202 1.05021 1.02491 1.04415 1.83013 1.43047 1.31540 0.96521 1.24577 1.10226 1.06259 0.97175 1.16963 0.79295 0.79635 0.87110 1.90702 1.60969 1.61168 1.27622 1.46057 1.41435 1.38393 1.10863 1.22315 0.97750 0.96340 0.85141 1.21131 0.92750 0.91378 0.90465 0.94404 1.22660 0.96251 0.99490 0.98263 1.23024 0.96647 0.98580 1.00406 1.21520 0.83392 1.01114 0.89473 1.44511 1.02632 1.61396 1.22773 1.19054 0.93715 1.30068 0.93219 0.90495 1.24868 0.96573 1.01234 0.97240 1.69942 1.11833 1.51369 1.23142 0.86062 0.79523 0.78744 0.81553 1.20371 1.21590 1.21715 0.93072 0.92210 0.92660 0.85841 0.92694 0.92198 0.93107 0.84062 0.81586 0.77409 0.91712 0.90769 0.91780 0.92367 0.92272 0.92287 0.90339 0.95832 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.98 37.15 0.33 -1.08 16 2 C -0.07 -0.86 3.07 -91.77 -0.28 -1.14 16 3 C -0.14 -1.43 9.09 37.16 0.34 -1.09 16 4 C -0.02 -0.19 4.72 -105.47 -0.50 -0.69 16 5 C -0.14 -1.39 9.18 -41.41 -0.38 -1.77 16 6 C -0.23 -2.03 10.92 29.18 0.32 -1.71 16 7 S 0.19 1.87 22.17 -107.50 -2.38 -0.51 16 8 C -0.26 -3.52 6.45 -36.79 -0.24 -3.75 16 9 C 0.58 9.68 7.77 -12.90 -0.10 9.58 16 10 O -0.53 -10.40 13.99 5.19 0.07 -10.32 16 11 N -0.72 -11.30 5.41 -61.64 -0.33 -11.63 16 12 C 0.11 2.12 5.11 -4.04 -0.02 2.10 16 13 C 0.15 2.98 3.22 -66.95 -0.22 2.77 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.13 -2.13 6.11 -24.83 -0.15 -2.28 16 16 C -0.15 -2.69 7.10 -24.52 -0.17 -2.86 16 17 C 0.17 4.02 5.46 -2.53 -0.01 4.01 16 18 N -0.59 -14.57 3.13 -162.57 -0.51 -15.07 16 19 C -0.23 -6.36 9.72 -15.06 -0.15 -6.50 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 22 N -0.92 -26.56 10.47 55.49 0.58 -25.98 16 23 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.05 0.44 7.49 -51.93 -0.39 0.05 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.12 1.92 4.95 -51.93 -0.26 1.66 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16 34 H 0.14 1.10 7.66 -52.49 -0.40 0.70 16 35 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.39 5.13 7.40 -40.82 -0.30 4.83 16 37 H 0.06 1.36 8.02 -51.93 -0.42 0.95 16 38 H 0.07 1.64 7.84 -51.93 -0.41 1.23 16 39 H 0.06 1.05 7.76 -51.93 -0.40 0.64 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 2.08 6.73 -51.93 -0.35 1.73 16 44 H 0.02 0.61 8.11 -51.93 -0.42 0.19 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -31.02 371.70 -10.43 -41.45 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.11 Total: 3.92 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.32 Total: -4.56 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.26 Total: -52.69 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.02 -10.43 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028334082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.421 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds