Wall clock time and date at job start Tue Mar 31 2020 13:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47654 * 2 1 4 4 C 1.50706 * 109.47062 * 120.00290 * 2 1 3 5 5 C 1.37470 * 123.35142 * 305.56607 * 4 2 1 6 6 C 1.33815 * 115.10058 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95627 * 359.72770 * 6 5 4 8 8 C 1.36648 * 123.35171 * 125.54468 * 4 2 1 9 9 C 1.46588 * 125.46023 * 0.02562 * 8 4 2 10 10 O 1.21702 * 119.99561 * 355.29770 * 9 8 4 11 11 N 1.34772 * 119.99919 * 175.29471 * 9 8 4 12 12 C 1.46506 * 119.99714 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46900 * 184.74377 * 12 11 9 14 14 H 1.08997 * 109.99733 * 53.67378 * 13 12 11 15 15 C 1.54324 * 109.88207 * 292.57554 * 13 12 11 16 16 C 1.55272 * 103.00740 * 218.46665 * 15 13 12 17 17 C 1.54913 * 101.52798 * 35.36343 * 16 15 13 18 18 N 1.47024 * 109.88035 * 174.76659 * 13 12 11 19 19 C 1.36938 * 125.64780 * 298.34022 * 18 13 12 20 20 H 1.07993 * 119.99979 * 348.11957 * 19 18 13 21 21 C 1.38809 * 119.99631 * 168.12477 * 19 18 13 22 22 N 1.31615 * 120.00416 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99920 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47108 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47439 * 119.99804 * 23 21 19 26 26 H 1.48505 * 109.47089 * 240.00117 * 23 21 19 27 27 H 1.09006 * 109.46963 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46912 * 59.99450 * 1 2 3 29 29 H 1.08997 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47458 * 240.00089 * 2 1 3 31 31 H 1.08993 * 109.47434 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46738 * 300.00380 * 3 2 1 33 33 H 1.09006 * 109.46572 * 60.00343 * 3 2 1 34 34 H 1.07998 * 122.44802 * 359.96351 * 5 4 2 35 35 H 1.08000 * 124.51939 * 180.02562 * 6 5 4 36 36 H 0.96997 * 120.00350 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47315 * 64.74084 * 12 11 9 38 38 H 1.08997 * 109.46568 * 304.73889 * 12 11 9 39 39 H 1.08996 * 110.71826 * 336.75430 * 15 13 12 40 40 H 1.09004 * 110.71846 * 100.02836 * 15 13 12 41 41 H 1.08998 * 110.96270 * 277.34229 * 16 15 13 42 42 H 1.08998 * 111.10126 * 153.44407 * 16 15 13 43 43 H 1.08990 * 110.37162 * 204.23293 * 17 16 15 44 44 H 1.09006 * 110.36548 * 82.01350 * 17 16 15 45 45 H 0.97000 * 120.00170 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6545 -0.3692 2.5074 6 6 2.2008 -1.1106 3.4783 7 16 3.2324 -2.3038 2.8278 8 6 2.9083 -1.7584 1.1879 9 6 3.4812 -2.3389 -0.0301 10 8 3.1184 -1.9424 -1.1220 11 7 4.4098 -3.3116 0.0593 12 6 4.9828 -3.8914 -1.1580 13 6 5.9151 -5.0453 -0.7834 14 1 5.3879 -5.7604 -0.1519 15 6 7.1522 -4.5000 -0.0391 16 6 8.3070 -5.3802 -0.5892 17 6 7.8652 -5.5872 -2.0595 18 7 6.3975 -5.7137 -2.0008 19 6 5.6135 -6.3489 -2.9265 20 1 4.5772 -6.5567 -2.7050 21 6 6.1509 -6.7258 -4.1496 22 7 7.4138 -6.4722 -4.4198 23 14 5.0817 -7.5929 -5.4122 24 1 3.7099 -7.7596 -4.8684 25 1 5.0268 -6.7821 -6.6551 26 1 5.6584 -8.9271 -5.7166 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 0.9672 0.4383 2.7121 35 1 2.0101 -0.9750 4.5327 36 1 4.6993 -3.6273 0.9296 37 1 5.5468 -3.1277 -1.6936 38 1 4.1808 -4.2644 -1.7950 39 1 7.3185 -3.4511 -0.2845 40 1 7.0442 -4.6330 1.0374 41 1 8.3588 -6.3313 -0.0593 42 1 9.2601 -4.8538 -0.5382 43 1 8.3084 -6.4969 -2.4643 44 1 8.1477 -4.7262 -2.6653 45 1 7.7893 -6.7352 -5.2746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028334082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:28 Heat of formation + Delta-G solvation = -10.672700 kcal Electronic energy + Delta-G solvation = -25063.066660 eV Core-core repulsion = 21592.555045 eV Total energy + Delta-G solvation = -3470.511615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13110 -39.67812 -38.89261 -35.85240 -34.96197 -34.42049 -31.71802 -31.13273 -29.84341 -27.99967 -26.85529 -26.19701 -24.94227 -22.74817 -22.32883 -21.90263 -21.29386 -19.97861 -18.78037 -18.52264 -17.37978 -17.13295 -16.60713 -16.45472 -16.30052 -15.72661 -15.47003 -15.13225 -14.88114 -14.56729 -14.41339 -14.33262 -13.98077 -13.67002 -13.54032 -13.39594 -13.36834 -13.06326 -12.94563 -12.88475 -12.72207 -12.37036 -12.05770 -12.05549 -11.98774 -11.82936 -11.70537 -11.61524 -11.47645 -11.42477 -10.72323 -10.67037 -10.27147 -9.72795 -9.36403 -8.89895 -7.88870 -5.26737 -0.45993 0.52721 0.96748 1.42358 1.42671 1.44810 1.54151 2.06532 2.15400 2.48345 3.29496 3.66145 3.79595 3.87556 3.94399 3.95844 4.04648 4.23806 4.29155 4.31120 4.39856 4.45346 4.52996 4.69410 4.71385 4.78550 4.79629 4.93105 4.95899 4.97231 5.04855 5.11663 5.14025 5.19585 5.22613 5.30989 5.37447 5.40417 5.45865 5.51934 5.66289 5.70891 5.77924 6.21898 6.45202 7.07772 7.13949 7.74471 8.39245 9.20989 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003277 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.301818 B = 8542.678817 C = 9604.268440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.131 4.131 4 C -0.012 4.012 5 C -0.156 4.156 6 C -0.210 4.210 7 S 0.230 5.770 8 C -0.311 4.311 9 C 0.581 3.419 10 O -0.571 6.571 11 N -0.706 5.706 12 C 0.131 3.869 13 C 0.148 3.852 14 H 0.050 0.950 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.171 3.829 18 N -0.611 5.611 19 C -0.239 4.239 20 H 0.075 0.925 21 C -0.059 4.059 22 N -0.945 5.945 23 Si 0.971 3.029 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.287 1.287 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.204 0.796 36 H 0.409 0.591 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.043 0.957 44 H -0.010 1.010 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 13.050 21.451 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C -0.188 4.188 4 C -0.028 4.028 5 C -0.186 4.186 6 C -0.348 4.348 7 S 0.499 5.501 8 C -0.431 4.431 9 C 0.369 3.631 10 O -0.453 6.453 11 N -0.358 5.358 12 C 0.005 3.995 13 C 0.040 3.960 14 H 0.067 0.933 15 C -0.153 4.153 16 C -0.170 4.170 17 C 0.046 3.954 18 N -0.335 5.335 19 C -0.368 4.368 20 H 0.093 0.907 21 C -0.252 4.252 22 N -0.593 5.593 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.221 1.221 26 H -0.213 1.213 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.184 0.816 35 H 0.221 0.779 36 H 0.245 0.755 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.008 0.992 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.600 12.012 21.146 25.796 hybrid contribution -1.073 0.423 -1.824 2.159 sum -9.673 12.436 19.322 24.930 Atomic orbital electron populations 1.21742 0.92867 1.01428 1.02944 1.20390 0.97022 0.96654 0.95703 1.21712 1.00175 0.94074 1.02864 1.19732 0.93101 0.92977 0.97013 1.20001 1.04730 1.04056 0.89817 1.25717 1.02605 1.00450 1.06016 1.82817 1.42743 1.31287 0.93295 1.24326 1.12589 1.08252 0.97929 1.17482 0.78664 0.79020 0.87934 1.90693 1.62295 1.62460 1.29834 1.45758 1.41415 1.38338 1.10259 1.21748 0.96211 0.95584 0.86004 1.21333 0.94467 0.91216 0.88960 0.93263 1.22656 0.93292 0.99008 1.00380 1.22889 0.98269 0.99960 0.95921 1.21340 0.83129 0.97968 0.92979 1.44769 1.03201 1.61940 1.23614 1.19331 0.93913 1.29590 0.94003 0.90702 1.25621 0.97758 1.02716 0.99127 1.70142 1.13175 1.52819 1.23168 0.85121 0.78431 0.77546 0.78929 1.19380 1.22145 1.21342 0.90544 0.91760 0.93997 0.89882 0.94283 0.91734 0.90662 0.81574 0.77883 0.75499 0.94157 0.94467 0.91507 0.87708 0.91058 0.89727 0.93868 0.99176 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.98 71.98 0.65 -1.93 16 2 C -0.08 -1.89 3.07 -11.54 -0.04 -1.93 16 3 C -0.13 -2.63 9.09 71.98 0.65 -1.97 16 4 C -0.01 -0.28 4.72 -20.42 -0.10 -0.37 16 5 C -0.16 -2.46 9.18 21.08 0.19 -2.27 16 6 C -0.21 -2.66 10.92 66.81 0.73 -1.93 16 7 S 0.23 3.77 22.17 -56.49 -1.25 2.52 16 8 C -0.31 -8.10 6.45 24.08 0.16 -7.95 16 9 C 0.58 19.85 7.77 86.42 0.67 20.52 16 10 O -0.57 -24.24 13.99 -4.35 -0.06 -24.30 16 11 N -0.71 -22.36 5.41 -467.16 -2.53 -24.89 16 12 C 0.13 5.26 5.11 86.38 0.44 5.71 16 13 C 0.15 5.79 3.22 45.34 0.15 5.94 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.12 -3.55 6.11 31.82 0.19 -3.35 16 16 C -0.13 -4.56 7.10 32.03 0.23 -4.33 16 17 C 0.17 8.35 5.46 86.86 0.47 8.83 16 18 N -0.61 -31.10 3.13 -668.25 -2.09 -33.19 16 19 C -0.24 -13.56 9.72 84.03 0.82 -12.75 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.06 -3.39 5.47 84.86 0.46 -2.92 16 22 N -0.94 -57.32 10.47 21.65 0.23 -57.10 16 23 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H 0.08 1.08 7.49 -2.38 -0.02 1.07 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 2.77 4.95 -2.39 -0.01 2.76 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.12 8.01 -2.38 -0.02 1.11 16 34 H 0.17 1.78 7.66 -2.91 -0.02 1.75 16 35 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.41 10.03 7.40 -92.71 -0.69 9.34 16 37 H 0.04 1.80 8.02 -2.39 -0.02 1.78 16 38 H 0.04 1.75 7.84 -2.39 -0.02 1.74 16 39 H 0.07 2.04 7.76 -2.39 -0.02 2.02 16 40 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.04 2.39 6.73 -2.39 -0.02 2.37 16 44 H -0.01 -0.53 8.11 -2.38 -0.02 -0.55 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -73.84 371.70 2.31 -71.53 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.30 Total: 17.06 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.68 Total: -0.71 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.39 Total: -115.18 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.25 Total: 2.52 kcal Total: -73.84 2.31 -71.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028334082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.854 kcal (2) G-P(sol) polarization free energy of solvation -73.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds