Wall clock time and date at job start Tue Mar 31 2020 13:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 C 1.50702 * 109.47139 * 119.99640 * 2 1 3 5 5 C 1.33817 * 124.52144 * 119.99865 * 4 2 1 6 6 C 1.37472 * 115.10089 * 179.74923 * 5 4 2 7 7 C 1.36653 * 113.29570 * 0.49371 * 6 5 4 8 8 C 1.46585 * 125.45791 * 179.79953 * 7 6 5 9 9 O 1.21706 * 119.99832 * 359.72220 * 8 7 6 10 10 N 1.34768 * 119.99964 * 179.71950 * 8 7 6 11 11 C 1.46505 * 120.00232 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47317 * 185.09286 * 11 10 8 13 13 H 1.09007 * 109.99576 * 303.47696 * 12 11 10 14 14 C 1.54321 * 109.88451 * 64.57209 * 12 11 10 15 15 C 1.55161 * 102.94276 * 141.60939 * 14 12 11 16 16 C 1.54910 * 101.58155 * 324.50010 * 15 14 12 17 17 N 1.47022 * 109.88369 * 182.38517 * 12 11 10 18 18 C 1.36938 * 125.64943 * 61.61492 * 17 12 11 19 19 H 1.08000 * 119.99939 * 13.60934 * 18 17 12 20 20 C 1.38815 * 119.99682 * 193.60907 * 18 17 12 21 21 N 1.31610 * 120.00346 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99471 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47232 * 59.99956 * 22 20 18 24 24 H 1.48500 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47066 * 300.00025 * 22 20 18 26 26 S 1.70618 * 124.52332 * 300.02436 * 4 2 1 27 27 H 1.09003 * 109.46636 * 300.00231 * 1 2 3 28 28 H 1.08995 * 109.47202 * 60.00300 * 1 2 3 29 29 H 1.08996 * 109.46912 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47516 * 239.99679 * 2 1 3 31 31 H 1.09001 * 109.47534 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47163 * 299.99983 * 3 2 1 33 33 H 1.08998 * 109.47641 * 59.99837 * 3 2 1 34 34 H 1.08002 * 122.45371 * 0.02562 * 5 4 2 35 35 H 1.08009 * 123.35507 * 180.29877 * 6 5 4 36 36 H 0.97002 * 120.00539 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46536 * 65.09309 * 11 10 8 38 38 H 1.08996 * 109.47140 * 305.09822 * 11 10 8 39 39 H 1.08995 * 110.71972 * 259.97457 * 14 12 11 40 40 H 1.09000 * 110.71850 * 23.24839 * 14 12 11 41 41 H 1.08998 * 111.00232 * 82.57696 * 15 14 12 42 42 H 1.08997 * 111.00145 * 206.42467 * 15 14 12 43 43 H 1.08993 * 110.36850 * 155.84654 * 16 15 14 44 44 H 1.09001 * 110.36610 * 278.06226 * 16 15 14 45 45 H 0.96999 * 120.00141 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8048 -1.8029 1.2132 6 6 3.1553 -2.2889 2.4505 7 6 2.6340 -1.5626 3.4840 8 6 2.8337 -1.8460 4.9082 9 8 3.5084 -2.7995 5.2502 10 7 2.2703 -1.0506 5.8390 11 6 2.4695 -1.3341 7.2625 12 6 1.6279 -0.3671 8.0977 13 1 1.8838 0.6623 7.8465 14 6 0.1277 -0.6143 7.8338 15 6 -0.5073 -0.4286 9.2373 16 6 0.5942 -1.0128 10.1567 17 7 1.8646 -0.6062 9.5289 18 6 3.0662 -0.4737 10.1722 19 1 3.8859 0.0344 9.6859 20 6 3.2307 -0.9924 11.4492 21 7 2.2320 -1.6120 12.0415 22 14 4.8697 -0.8110 12.3270 23 1 5.1919 0.6304 12.4810 24 1 4.7862 -1.4450 13.6672 25 1 5.9336 -1.4737 11.5307 26 16 1.6915 -0.2293 2.8316 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 3.1329 -2.2662 0.2945 35 1 3.7779 -3.1601 2.5917 36 1 1.7323 -0.2909 5.5665 37 1 3.5227 -1.2095 7.5138 38 1 2.1640 -2.3586 7.4751 39 1 -0.2666 0.1204 7.1319 40 1 -0.0375 -1.6273 7.4668 41 1 -0.6772 0.6263 9.4527 42 1 -1.4326 -0.9978 9.3258 43 1 0.5145 -0.5917 11.1589 44 1 0.5190 -2.0995 10.1955 45 1 2.3471 -1.9748 12.9337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028340677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:10 Heat of formation + Delta-G solvation = 3.006791 kcal Electronic energy + Delta-G solvation = -24539.156435 eV Core-core repulsion = 21069.238008 eV Total energy + Delta-G solvation = -3469.918427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.59386 -38.36549 -37.54174 -35.35569 -34.26574 -32.48540 -30.09388 -29.35049 -28.33146 -27.58290 -25.47801 -24.64706 -23.61623 -21.64385 -21.12249 -20.22173 -19.85703 -19.11848 -17.91418 -16.67760 -16.34593 -15.62422 -15.27537 -15.00503 -14.75693 -14.68049 -14.22956 -14.07426 -13.89591 -13.68775 -13.17819 -13.14470 -12.79209 -12.42178 -12.36077 -12.08067 -11.89042 -11.77230 -11.69083 -11.55412 -11.52183 -11.31890 -10.95261 -10.90156 -10.77229 -10.25726 -10.13714 -10.00286 -9.86663 -9.77528 -9.67088 -8.92063 -8.73903 -8.63666 -8.56222 -6.85517 -5.76325 -3.13128 0.40167 1.29777 1.73847 2.29186 3.36226 3.36617 3.42757 3.45934 3.47390 4.20346 4.48122 4.48935 4.69943 4.91698 4.98672 5.19112 5.19397 5.30222 5.32641 5.39520 5.39824 5.42062 5.50036 5.58278 5.61699 5.75751 5.80363 5.80383 5.87046 6.00005 6.05649 6.14269 6.21240 6.23939 6.45164 6.53593 6.59035 6.68040 6.79260 7.04001 7.51929 7.60025 7.70791 7.79254 8.25228 8.38829 9.17323 9.77805 10.44704 11.35286 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002763 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.733610 B =10132.117329 C =10773.951324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.149 4.149 4 C -0.193 4.193 5 C -0.152 4.152 6 C -0.059 4.059 7 C -0.259 4.259 8 C 0.582 3.418 9 O -0.531 6.531 10 N -0.717 5.717 11 C 0.109 3.891 12 C 0.151 3.849 13 H 0.038 0.962 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.001 4.001 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 S 0.201 5.799 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.392 0.608 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.025 0.975 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 5.062 -24.457 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.207 4.207 4 C -0.312 4.312 5 C -0.183 4.183 6 C -0.092 4.092 7 C -0.379 4.379 8 C 0.367 3.633 9 O -0.409 6.409 10 N -0.368 5.368 11 C -0.015 4.015 12 C 0.043 3.957 13 H 0.056 0.944 14 C -0.166 4.166 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.363 4.363 19 H 0.094 0.906 20 C -0.198 4.198 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.209 1.209 26 S 0.469 5.531 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.043 0.957 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.824 5.505 -23.246 24.589 hybrid contribution 1.554 -0.942 -0.396 1.860 sum -4.270 4.563 -23.642 24.454 Atomic orbital electron populations 1.21946 0.93776 1.02555 1.02419 1.19761 0.96018 0.95688 0.93266 1.21948 1.01716 0.94624 1.02421 1.24267 1.05111 1.01698 1.00134 1.19958 1.01879 0.97581 0.98850 1.20742 0.98398 0.99825 0.90235 1.24785 1.10977 1.04247 0.97899 1.16999 0.80007 0.82924 0.83409 1.90841 1.39629 1.29134 1.81345 1.46038 1.52471 1.30539 1.07750 1.22312 1.01918 1.01089 0.76222 1.21133 0.92336 0.95566 0.86678 0.94445 1.22620 0.95593 1.00731 0.97606 1.23006 0.98955 1.00629 0.96087 1.21477 0.81692 0.96636 0.95514 1.44483 1.06430 1.79955 1.00363 1.18949 0.88981 1.30423 0.97974 0.90649 1.24899 0.97792 0.99079 0.98054 1.69920 1.30045 1.41478 1.14758 0.86220 0.83271 0.77637 0.78771 1.21064 1.21547 1.20926 1.82887 1.47594 1.26699 0.95886 0.92229 0.91761 0.92054 0.89366 0.92057 0.91756 0.92232 0.84069 0.83048 0.77437 0.91248 0.91278 0.92396 0.91783 0.92268 0.92313 0.90719 0.95670 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.08 37.16 0.34 -0.55 16 2 C -0.03 -0.18 3.25 -91.77 -0.30 -0.48 16 3 C -0.15 -0.90 9.08 37.16 0.34 -0.56 16 4 C -0.19 -1.73 4.95 -35.86 -0.18 -1.91 16 5 C -0.15 -1.46 9.95 -41.41 -0.41 -1.88 16 6 C -0.06 -0.72 10.01 -40.43 -0.40 -1.12 16 7 C -0.26 -3.49 6.45 -36.79 -0.24 -3.72 16 8 C 0.58 9.93 7.78 -12.90 -0.10 9.83 16 9 O -0.53 -11.20 16.84 5.18 0.09 -11.11 16 10 N -0.72 -11.54 5.32 -61.65 -0.33 -11.87 16 11 C 0.11 2.16 5.07 -4.04 -0.02 2.14 16 12 C 0.15 3.01 3.22 -66.96 -0.22 2.80 16 13 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.13 -2.14 6.10 -24.90 -0.15 -2.30 16 15 C -0.15 -2.71 7.09 -24.58 -0.17 -2.89 16 16 C 0.17 4.09 5.43 -2.53 -0.01 4.08 16 17 N -0.59 -14.63 3.13 -162.57 -0.51 -15.14 16 18 C -0.23 -6.45 9.77 -15.06 -0.15 -6.60 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 21 N -0.92 -26.71 10.53 55.49 0.58 -26.12 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 S 0.20 2.01 21.37 -107.50 -2.30 -0.29 16 27 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.39 5.20 7.45 -40.82 -0.30 4.90 16 37 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 38 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.98 6.85 -51.93 -0.36 1.62 16 44 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -31.91 378.20 -10.89 -42.80 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.33 Total: 2.13 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.77 Total: -3.27 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.25 Total: -53.13 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.30 Total: -0.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.91 -10.89 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028340677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.808 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds