Wall clock time and date at job start Tue Mar 31 2020 13:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 C 1.50702 * 109.47139 * 119.99640 * 2 1 3 5 5 C 1.33817 * 124.52144 * 119.99865 * 4 2 1 6 6 C 1.37472 * 115.10089 * 179.74923 * 5 4 2 7 7 C 1.36653 * 113.29570 * 0.49371 * 6 5 4 8 8 C 1.46585 * 125.45791 * 179.79953 * 7 6 5 9 9 O 1.21706 * 119.99832 * 359.72220 * 8 7 6 10 10 N 1.34768 * 119.99964 * 179.71950 * 8 7 6 11 11 C 1.46505 * 120.00232 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47317 * 185.09286 * 11 10 8 13 13 H 1.09007 * 109.99576 * 303.47696 * 12 11 10 14 14 C 1.54321 * 109.88451 * 64.57209 * 12 11 10 15 15 C 1.55161 * 102.94276 * 141.60939 * 14 12 11 16 16 C 1.54910 * 101.58155 * 324.50010 * 15 14 12 17 17 N 1.47022 * 109.88369 * 182.38517 * 12 11 10 18 18 C 1.36938 * 125.64943 * 61.61492 * 17 12 11 19 19 H 1.08000 * 119.99939 * 13.60934 * 18 17 12 20 20 C 1.38815 * 119.99682 * 193.60907 * 18 17 12 21 21 N 1.31610 * 120.00346 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99471 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47232 * 59.99956 * 22 20 18 24 24 H 1.48500 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47066 * 300.00025 * 22 20 18 26 26 S 1.70618 * 124.52332 * 300.02436 * 4 2 1 27 27 H 1.09003 * 109.46636 * 300.00231 * 1 2 3 28 28 H 1.08995 * 109.47202 * 60.00300 * 1 2 3 29 29 H 1.08996 * 109.46912 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47516 * 239.99679 * 2 1 3 31 31 H 1.09001 * 109.47534 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47163 * 299.99983 * 3 2 1 33 33 H 1.08998 * 109.47641 * 59.99837 * 3 2 1 34 34 H 1.08002 * 122.45371 * 0.02562 * 5 4 2 35 35 H 1.08009 * 123.35507 * 180.29877 * 6 5 4 36 36 H 0.97002 * 120.00539 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46536 * 65.09309 * 11 10 8 38 38 H 1.08996 * 109.47140 * 305.09822 * 11 10 8 39 39 H 1.08995 * 110.71972 * 259.97457 * 14 12 11 40 40 H 1.09000 * 110.71850 * 23.24839 * 14 12 11 41 41 H 1.08998 * 111.00232 * 82.57696 * 15 14 12 42 42 H 1.08997 * 111.00145 * 206.42467 * 15 14 12 43 43 H 1.08993 * 110.36850 * 155.84654 * 16 15 14 44 44 H 1.09001 * 110.36610 * 278.06226 * 16 15 14 45 45 H 0.96999 * 120.00141 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8048 -1.8029 1.2132 6 6 3.1553 -2.2889 2.4505 7 6 2.6340 -1.5626 3.4840 8 6 2.8337 -1.8460 4.9082 9 8 3.5084 -2.7995 5.2502 10 7 2.2703 -1.0506 5.8390 11 6 2.4695 -1.3341 7.2625 12 6 1.6279 -0.3671 8.0977 13 1 1.8838 0.6623 7.8465 14 6 0.1277 -0.6143 7.8338 15 6 -0.5073 -0.4286 9.2373 16 6 0.5942 -1.0128 10.1567 17 7 1.8646 -0.6062 9.5289 18 6 3.0662 -0.4737 10.1722 19 1 3.8859 0.0344 9.6859 20 6 3.2307 -0.9924 11.4492 21 7 2.2320 -1.6120 12.0415 22 14 4.8697 -0.8110 12.3270 23 1 5.1919 0.6304 12.4810 24 1 4.7862 -1.4450 13.6672 25 1 5.9336 -1.4737 11.5307 26 16 1.6915 -0.2293 2.8316 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 3.1329 -2.2662 0.2945 35 1 3.7779 -3.1601 2.5917 36 1 1.7323 -0.2909 5.5665 37 1 3.5227 -1.2095 7.5138 38 1 2.1640 -2.3586 7.4751 39 1 -0.2666 0.1204 7.1319 40 1 -0.0375 -1.6273 7.4668 41 1 -0.6772 0.6263 9.4527 42 1 -1.4326 -0.9978 9.3258 43 1 0.5145 -0.5917 11.1589 44 1 0.5190 -2.0995 10.1955 45 1 2.3471 -1.9748 12.9337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028340677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:09 Heat of formation + Delta-G solvation = -16.044481 kcal Electronic energy + Delta-G solvation = -24539.982561 eV Core-core repulsion = 21069.238008 eV Total energy + Delta-G solvation = -3470.744553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94736 -39.47388 -38.93629 -36.03188 -35.82988 -34.43006 -31.61262 -30.95766 -29.60354 -28.01096 -26.88341 -26.27532 -25.03166 -22.55814 -22.10292 -21.87623 -21.34155 -20.34242 -19.12278 -18.47981 -17.52072 -16.98258 -16.55805 -16.49370 -16.25987 -15.73363 -15.41926 -15.31077 -14.91915 -14.79553 -14.51230 -14.16541 -13.97922 -13.67040 -13.52290 -13.38583 -13.21143 -13.02359 -12.89865 -12.88010 -12.67015 -12.36359 -12.10252 -12.07070 -12.05514 -11.88347 -11.76570 -11.54491 -11.50193 -11.42688 -11.25582 -10.69260 -10.27915 -9.64945 -9.51893 -8.89072 -7.89332 -5.27229 -0.52628 0.44132 0.90712 1.37592 1.43241 1.46878 1.52408 2.02990 2.13673 2.48587 3.29580 3.58459 3.66081 3.80630 3.94493 3.95816 4.00135 4.22963 4.23797 4.31739 4.40583 4.45257 4.51625 4.64496 4.69394 4.79271 4.85094 4.90849 4.96603 4.98389 5.08164 5.10987 5.11995 5.15790 5.23029 5.27686 5.35010 5.37933 5.42973 5.45119 5.51766 5.65589 5.77292 6.21347 6.40877 7.06378 7.08332 7.74347 8.39955 9.21036 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002763 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.733610 B =10132.117329 C =10773.951324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.176 4.176 5 C -0.161 4.161 6 C -0.055 4.055 7 C -0.304 4.304 8 C 0.581 3.419 9 O -0.584 6.584 10 N -0.704 5.704 11 C 0.129 3.871 12 C 0.148 3.852 13 H 0.053 0.947 14 C -0.115 4.115 15 C -0.132 4.132 16 C 0.172 3.828 17 N -0.610 5.610 18 C -0.242 4.242 19 H 0.077 0.923 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.292 1.292 25 H -0.283 1.283 26 S 0.244 5.756 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.167 0.833 35 H 0.143 0.857 36 H 0.410 0.590 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.040 0.960 44 H -0.010 1.010 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 7.160 -27.900 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 C -0.208 4.208 4 C -0.297 4.297 5 C -0.191 4.191 6 C -0.089 4.089 7 C -0.424 4.424 8 C 0.369 3.631 9 O -0.466 6.466 10 N -0.355 5.355 11 C 0.003 3.997 12 C 0.040 3.960 13 H 0.071 0.929 14 C -0.153 4.153 15 C -0.170 4.170 16 C 0.047 3.953 17 N -0.334 5.334 18 C -0.371 4.371 19 H 0.095 0.905 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.198 1.198 24 H -0.218 1.218 25 H -0.209 1.209 26 S 0.512 5.488 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.184 0.816 35 H 0.161 0.839 36 H 0.246 0.754 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.008 0.992 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.117 7.655 -26.735 28.705 hybrid contribution 1.927 -1.551 0.499 2.524 sum -5.189 6.104 -26.236 27.432 Atomic orbital electron populations 1.21969 0.93023 1.02602 1.03179 1.19929 0.96549 0.95936 0.92414 1.21973 1.01498 0.94168 1.03170 1.24761 1.03273 1.00897 1.00722 1.20112 1.02300 0.98024 0.98667 1.20924 0.97536 0.99283 0.91143 1.24455 1.14594 1.07500 0.95839 1.17496 0.78745 0.81885 0.84980 1.90803 1.41932 1.31338 1.82553 1.45722 1.52683 1.31104 1.06013 1.21778 0.99841 0.99506 0.78566 1.21342 0.94768 0.95853 0.84001 0.92902 1.22620 0.92677 1.02291 0.97709 1.22869 0.97775 1.01303 0.95073 1.21299 0.83770 0.94682 0.95504 1.44746 1.06075 1.79758 1.02833 1.19277 0.90077 1.29619 0.98176 0.90545 1.25678 1.00895 0.99640 0.99088 1.70128 1.31657 1.42851 1.14678 0.85252 0.79481 0.77962 0.77260 1.19818 1.21848 1.20946 1.82651 1.45893 1.24282 0.95954 0.92538 0.90054 0.92377 0.87744 0.92466 0.90027 0.92583 0.81563 0.83920 0.75391 0.94465 0.94211 0.87662 0.91800 0.90889 0.89825 0.94185 0.99158 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.08 71.98 0.65 -0.57 16 2 C -0.03 -0.26 3.25 -11.54 -0.04 -0.30 16 3 C -0.15 -1.26 9.08 71.98 0.65 -0.61 16 4 C -0.18 -2.63 4.95 24.68 0.12 -2.51 16 5 C -0.16 -2.72 9.95 21.08 0.21 -2.51 16 6 C -0.05 -1.28 10.01 21.72 0.22 -1.07 16 7 C -0.30 -8.00 6.45 24.08 0.16 -7.85 16 8 C 0.58 20.26 7.78 86.42 0.67 20.93 16 9 O -0.58 -25.94 16.84 -4.37 -0.07 -26.01 16 10 N -0.70 -22.51 5.32 -467.18 -2.49 -24.99 16 11 C 0.13 5.26 5.07 86.38 0.44 5.70 16 12 C 0.15 5.80 3.22 45.34 0.15 5.94 16 13 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 14 C -0.12 -3.57 6.10 31.78 0.19 -3.38 16 15 C -0.13 -4.57 7.09 31.99 0.23 -4.35 16 16 C 0.17 8.46 5.43 86.85 0.47 8.93 16 17 N -0.61 -31.04 3.13 -668.26 -2.09 -33.13 16 18 C -0.24 -13.70 9.77 84.03 0.82 -12.88 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 20 C -0.06 -3.43 5.47 84.86 0.46 -2.96 16 21 N -0.95 -57.57 10.53 21.65 0.23 -57.34 16 22 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 26 S 0.24 4.24 21.37 -56.49 -1.21 3.03 16 27 H 0.06 0.50 7.90 -2.39 -0.02 0.48 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.06 0.51 7.90 -2.39 -0.02 0.50 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.41 10.09 7.45 -92.71 -0.69 9.40 16 37 H 0.04 1.74 7.92 -2.39 -0.02 1.72 16 38 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 39 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.06 2.01 7.81 -2.39 -0.02 1.99 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.04 2.21 6.85 -2.39 -0.02 2.19 16 44 H -0.01 -0.53 8.08 -2.39 -0.02 -0.55 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -74.37 378.20 2.09 -72.28 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.29 Total: 14.68 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.41 Total: 2.53 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -4.35 Total: -115.47 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.07 Total: -26.01 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.21 Total: 3.03 kcal Total: -74.37 2.09 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028340677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.237 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds