Wall clock time and date at job start Tue Mar 31 2020 13:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47040 * 2 1 4 4 C 1.50697 * 109.46773 * 119.99890 * 2 1 3 5 5 C 1.33818 * 124.52236 * 120.00717 * 4 2 1 6 6 C 1.37471 * 115.10390 * 180.02562 * 5 4 2 7 7 C 1.36645 * 113.29870 * 359.97438 * 6 5 4 8 8 C 1.46583 * 125.46291 * 180.02562 * 7 6 5 9 9 O 1.21702 * 119.99404 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99999 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99676 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46991 * 184.66328 * 11 10 8 13 13 H 1.08997 * 110.00037 * 54.40463 * 12 11 10 14 14 C 1.54328 * 109.88253 * 293.30821 * 12 11 10 15 15 C 1.55271 * 103.00829 * 218.46742 * 14 12 11 16 16 C 1.54911 * 101.52965 * 35.36431 * 15 14 12 17 17 N 1.47023 * 109.88399 * 175.50576 * 12 11 10 18 18 C 1.36945 * 125.64364 * 298.33764 * 17 12 11 19 19 H 1.07999 * 119.99844 * 346.28822 * 18 17 12 20 20 C 1.38811 * 119.99530 * 166.29381 * 18 17 12 21 21 N 1.31613 * 120.00483 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99613 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47237 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47267 * 119.99835 * 22 20 18 25 25 H 1.48494 * 109.47391 * 240.00014 * 22 20 18 26 26 S 1.70621 * 124.52738 * 300.35028 * 4 2 1 27 27 H 1.09007 * 109.47248 * 299.99792 * 1 2 3 28 28 H 1.08996 * 109.47167 * 59.99993 * 1 2 3 29 29 H 1.08997 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47144 * 240.00155 * 2 1 3 31 31 H 1.08993 * 109.47418 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47146 * 300.00020 * 3 2 1 33 33 H 1.09009 * 109.47449 * 60.00060 * 3 2 1 34 34 H 1.08001 * 122.44925 * 0.05004 * 5 4 2 35 35 H 1.08000 * 123.34923 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00164 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47103 * 64.66430 * 11 10 8 38 38 H 1.08998 * 109.47218 * 304.66198 * 11 10 8 39 39 H 1.08999 * 110.71908 * 336.76021 * 14 12 11 40 40 H 1.09000 * 110.71633 * 100.02768 * 14 12 11 41 41 H 1.09002 * 110.96391 * 277.33660 * 15 14 12 42 42 H 1.09005 * 111.09857 * 153.45022 * 15 14 12 43 43 H 1.08998 * 110.36709 * 204.23305 * 16 15 14 44 44 H 1.09001 * 110.36536 * 82.01625 * 16 15 14 45 45 H 0.97000 * 120.00236 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8049 -1.8029 1.2132 6 6 3.1503 -2.2925 2.4504 7 6 2.6342 -1.5627 3.4839 8 6 2.8343 -1.8458 4.9082 9 8 3.5090 -2.7992 5.2501 10 7 2.2719 -1.0497 5.8389 11 6 2.4714 -1.3330 7.2624 12 6 1.6393 -0.3581 8.0979 13 1 0.5957 -0.3965 7.7860 14 6 2.1850 1.0756 7.9296 15 6 2.0494 1.6710 9.3572 16 6 2.3560 0.4347 10.2388 17 7 1.7482 -0.7020 9.5232 18 6 1.3505 -1.8825 10.0920 19 1 0.7202 -2.5630 9.5389 20 6 1.7576 -2.2044 11.3795 21 7 2.5261 -1.3752 12.0534 22 14 1.2145 -3.8144 12.1556 23 1 0.3611 -4.5626 11.1979 24 1 2.4094 -4.6283 12.4949 25 1 0.4408 -3.5322 13.3912 26 16 1.6849 -0.2341 2.8316 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1334 -2.2658 0.2944 35 1 3.7682 -3.1670 2.5915 36 1 1.7351 -0.2892 5.5664 37 1 3.5261 -1.2166 7.5117 38 1 2.1579 -2.3546 7.4770 39 1 3.2297 1.0567 7.6192 40 1 1.5802 1.6373 7.2178 41 1 1.0371 2.0351 9.5333 42 1 2.7816 2.4611 9.5241 43 1 1.9028 0.5491 11.2235 44 1 3.4327 0.2926 10.3316 45 1 2.8108 -1.6003 12.9529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028340678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:14 Heat of formation + Delta-G solvation = 2.753538 kcal Electronic energy + Delta-G solvation = -24530.928682 eV Core-core repulsion = 21060.999273 eV Total energy + Delta-G solvation = -3469.929409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.59287 -38.36495 -37.54501 -35.35612 -34.26697 -32.48762 -30.09426 -29.35101 -28.33910 -27.58284 -25.47936 -24.64938 -23.61946 -21.64472 -21.12994 -20.23421 -19.83146 -19.13208 -17.91543 -16.69355 -16.35960 -15.61925 -15.29501 -14.98497 -14.75693 -14.68178 -14.22382 -14.07832 -13.88182 -13.70111 -13.15637 -13.12627 -12.79171 -12.42350 -12.36873 -12.09362 -11.89657 -11.79074 -11.70145 -11.55277 -11.52223 -11.35755 -10.94508 -10.90288 -10.80700 -10.22712 -10.10517 -9.97273 -9.86888 -9.77084 -9.67910 -8.92878 -8.74001 -8.66030 -8.55846 -6.85331 -5.76850 -3.13539 0.40166 1.29741 1.73814 2.29204 3.35969 3.36659 3.41790 3.47115 3.48904 4.20362 4.48083 4.48820 4.69921 4.91720 4.98672 5.19123 5.19382 5.30219 5.32335 5.38544 5.39798 5.42089 5.48970 5.58295 5.61512 5.75724 5.79787 5.80384 5.86919 5.99195 6.05037 6.13929 6.21203 6.22864 6.44956 6.53141 6.58859 6.67590 6.78713 7.03633 7.51751 7.60102 7.70791 7.79431 8.24859 8.38788 9.17221 9.77574 10.44254 11.34922 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.002783 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.234647 B =10057.371150 C =10790.002581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.149 4.149 4 C -0.192 4.192 5 C -0.152 4.152 6 C -0.059 4.059 7 C -0.259 4.259 8 C 0.582 3.418 9 O -0.531 6.531 10 N -0.718 5.718 11 C 0.109 3.891 12 C 0.151 3.849 13 H 0.038 0.962 14 C -0.129 4.129 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 S 0.201 5.799 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.392 0.608 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 7.507 -24.379 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.207 4.207 4 C -0.312 4.312 5 C -0.183 4.183 6 C -0.092 4.092 7 C -0.379 4.379 8 C 0.367 3.633 9 O -0.409 6.409 10 N -0.368 5.368 11 C -0.016 4.016 12 C 0.043 3.957 13 H 0.056 0.944 14 C -0.167 4.167 15 C -0.186 4.186 16 C 0.046 3.954 17 N -0.313 5.313 18 C -0.361 4.361 19 H 0.095 0.905 20 C -0.199 4.199 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 S 0.469 5.531 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.226 0.774 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.960 7.890 -23.185 24.669 hybrid contribution 0.502 -1.804 -0.427 1.921 sum -2.458 6.085 -23.612 24.508 Atomic orbital electron populations 1.21951 0.93777 1.02569 1.02421 1.19760 0.96012 0.95696 0.93265 1.21945 1.01703 0.94622 1.02417 1.24267 1.05024 1.01779 1.00129 1.19958 1.01972 0.97487 0.98852 1.20739 0.98468 0.99749 0.90234 1.24783 1.10930 1.04295 0.97899 1.17002 0.80057 0.82870 0.83413 1.90840 1.39658 1.29072 1.81346 1.46042 1.52611 1.30426 1.07749 1.22314 1.01247 1.01767 0.76229 1.21138 0.96020 0.91610 0.86957 0.94394 1.22659 1.00436 0.95894 0.97685 1.23022 1.00489 0.99259 0.95875 1.21477 0.96449 0.82524 0.94906 1.44501 1.72189 1.15046 0.99532 1.19045 1.24488 0.94837 0.97757 0.90542 1.24902 0.98840 0.98377 0.97777 1.69944 1.38690 1.35732 1.11820 0.86066 0.77759 0.83067 0.79013 1.20346 1.21587 1.21710 1.82886 1.47082 1.27231 0.95896 0.92229 0.91753 0.92050 0.89363 0.92061 0.91763 0.92232 0.84065 0.83043 0.77438 0.91698 0.90800 0.91762 0.92367 0.92272 0.92272 0.90738 0.95649 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.08 37.16 0.34 -0.57 16 2 C -0.03 -0.18 3.25 -91.77 -0.30 -0.48 16 3 C -0.15 -0.89 9.09 37.16 0.34 -0.55 16 4 C -0.19 -1.73 4.95 -35.86 -0.18 -1.91 16 5 C -0.15 -1.47 9.95 -41.41 -0.41 -1.88 16 6 C -0.06 -0.72 10.01 -40.44 -0.40 -1.12 16 7 C -0.26 -3.49 6.45 -36.79 -0.24 -3.73 16 8 C 0.58 9.96 7.78 -12.90 -0.10 9.86 16 9 O -0.53 -11.20 16.84 5.19 0.09 -11.12 16 10 N -0.72 -11.56 5.40 -61.65 -0.33 -11.90 16 11 C 0.11 2.16 5.09 -4.04 -0.02 2.14 16 12 C 0.15 3.01 3.22 -66.95 -0.22 2.79 16 13 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 14 C -0.13 -2.14 6.07 -24.83 -0.15 -2.29 16 15 C -0.15 -2.69 7.10 -24.52 -0.17 -2.86 16 16 C 0.17 4.07 5.42 -2.53 -0.01 4.06 16 17 N -0.59 -14.63 3.13 -162.57 -0.51 -15.14 16 18 C -0.23 -6.41 9.73 -15.06 -0.15 -6.56 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 21 N -0.92 -26.69 10.54 55.49 0.58 -26.11 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 S 0.20 2.01 21.37 -107.50 -2.30 -0.29 16 27 H 0.06 0.38 7.89 -51.92 -0.41 -0.03 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.37 7.91 -51.92 -0.41 -0.04 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.39 5.20 7.36 -40.82 -0.30 4.90 16 37 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 38 H 0.07 1.67 7.86 -51.93 -0.41 1.26 16 39 H 0.06 1.06 7.78 -51.93 -0.40 0.65 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.97 6.86 -51.93 -0.36 1.62 16 44 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -31.98 378.04 -10.88 -42.86 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.32 Total: 2.00 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.77 Total: -3.25 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.26 Total: -53.15 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.30 Total: -0.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.98 -10.88 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028340678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.614 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds