Wall clock time and date at job start Tue Mar 31 2020 13:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47040 * 2 1 4 4 C 1.50697 * 109.46773 * 119.99890 * 2 1 3 5 5 C 1.33818 * 124.52236 * 120.00717 * 4 2 1 6 6 C 1.37471 * 115.10390 * 180.02562 * 5 4 2 7 7 C 1.36645 * 113.29870 * 359.97438 * 6 5 4 8 8 C 1.46583 * 125.46291 * 180.02562 * 7 6 5 9 9 O 1.21702 * 119.99404 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99999 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99676 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46991 * 184.66328 * 11 10 8 13 13 H 1.08997 * 110.00037 * 54.40463 * 12 11 10 14 14 C 1.54328 * 109.88253 * 293.30821 * 12 11 10 15 15 C 1.55271 * 103.00829 * 218.46742 * 14 12 11 16 16 C 1.54911 * 101.52965 * 35.36431 * 15 14 12 17 17 N 1.47023 * 109.88399 * 175.50576 * 12 11 10 18 18 C 1.36945 * 125.64364 * 298.33764 * 17 12 11 19 19 H 1.07999 * 119.99844 * 346.28822 * 18 17 12 20 20 C 1.38811 * 119.99530 * 166.29381 * 18 17 12 21 21 N 1.31613 * 120.00483 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99613 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47237 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47267 * 119.99835 * 22 20 18 25 25 H 1.48494 * 109.47391 * 240.00014 * 22 20 18 26 26 S 1.70621 * 124.52738 * 300.35028 * 4 2 1 27 27 H 1.09007 * 109.47248 * 299.99792 * 1 2 3 28 28 H 1.08996 * 109.47167 * 59.99993 * 1 2 3 29 29 H 1.08997 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47144 * 240.00155 * 2 1 3 31 31 H 1.08993 * 109.47418 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47146 * 300.00020 * 3 2 1 33 33 H 1.09009 * 109.47449 * 60.00060 * 3 2 1 34 34 H 1.08001 * 122.44925 * 0.05004 * 5 4 2 35 35 H 1.08000 * 123.34923 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00164 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47103 * 64.66430 * 11 10 8 38 38 H 1.08998 * 109.47218 * 304.66198 * 11 10 8 39 39 H 1.08999 * 110.71908 * 336.76021 * 14 12 11 40 40 H 1.09000 * 110.71633 * 100.02768 * 14 12 11 41 41 H 1.09002 * 110.96391 * 277.33660 * 15 14 12 42 42 H 1.09005 * 111.09857 * 153.45022 * 15 14 12 43 43 H 1.08998 * 110.36709 * 204.23305 * 16 15 14 44 44 H 1.09001 * 110.36536 * 82.01625 * 16 15 14 45 45 H 0.97000 * 120.00236 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8049 -1.8029 1.2132 6 6 3.1503 -2.2925 2.4504 7 6 2.6342 -1.5627 3.4839 8 6 2.8343 -1.8458 4.9082 9 8 3.5090 -2.7992 5.2501 10 7 2.2719 -1.0497 5.8389 11 6 2.4714 -1.3330 7.2624 12 6 1.6393 -0.3581 8.0979 13 1 0.5957 -0.3965 7.7860 14 6 2.1850 1.0756 7.9296 15 6 2.0494 1.6710 9.3572 16 6 2.3560 0.4347 10.2388 17 7 1.7482 -0.7020 9.5232 18 6 1.3505 -1.8825 10.0920 19 1 0.7202 -2.5630 9.5389 20 6 1.7576 -2.2044 11.3795 21 7 2.5261 -1.3752 12.0534 22 14 1.2145 -3.8144 12.1556 23 1 0.3611 -4.5626 11.1979 24 1 2.4094 -4.6283 12.4949 25 1 0.4408 -3.5322 13.3912 26 16 1.6849 -0.2341 2.8316 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1334 -2.2658 0.2944 35 1 3.7682 -3.1670 2.5915 36 1 1.7351 -0.2892 5.5664 37 1 3.5261 -1.2166 7.5117 38 1 2.1579 -2.3546 7.4770 39 1 3.2297 1.0567 7.6192 40 1 1.5802 1.6373 7.2178 41 1 1.0371 2.0351 9.5333 42 1 2.7816 2.4611 9.5241 43 1 1.9028 0.5491 11.2235 44 1 3.4327 0.2926 10.3316 45 1 2.8108 -1.6003 12.9529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028340678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:13 Heat of formation + Delta-G solvation = -16.409615 kcal Electronic energy + Delta-G solvation = -24531.759659 eV Core-core repulsion = 21060.999273 eV Total energy + Delta-G solvation = -3470.760386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94631 -39.47267 -38.93795 -36.03278 -35.83188 -34.43316 -31.60831 -30.96116 -29.60754 -28.01094 -26.88121 -26.28107 -25.03223 -22.56591 -22.11086 -21.87247 -21.31797 -20.35575 -19.11634 -18.50894 -17.53468 -16.98674 -16.57592 -16.44860 -16.27629 -15.72534 -15.42343 -15.31129 -14.89710 -14.78556 -14.50797 -14.16631 -13.99519 -13.67895 -13.53522 -13.37832 -13.21863 -13.06197 -12.89978 -12.87827 -12.71965 -12.36523 -12.10336 -12.05534 -11.99984 -11.89398 -11.73014 -11.54601 -11.49556 -11.42359 -11.25383 -10.71378 -10.29295 -9.65234 -9.52022 -8.88867 -7.90309 -5.27958 -0.52771 0.43969 0.90551 1.37461 1.42260 1.44542 1.53882 2.02894 2.13542 2.47758 3.28894 3.58422 3.66180 3.79691 3.95155 3.96005 4.00093 4.22915 4.23996 4.31604 4.39107 4.45187 4.52531 4.64444 4.69752 4.79259 4.85042 4.91474 4.97057 4.98376 5.08048 5.11537 5.12049 5.16297 5.22935 5.27604 5.34943 5.37926 5.42896 5.45182 5.51741 5.65818 5.77524 6.21186 6.40709 7.06352 7.08092 7.73896 8.39219 9.20379 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.002783 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.234647 B =10057.371150 C =10790.002581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.176 4.176 5 C -0.161 4.161 6 C -0.054 4.054 7 C -0.304 4.304 8 C 0.581 3.419 9 O -0.584 6.584 10 N -0.704 5.704 11 C 0.129 3.871 12 C 0.148 3.852 13 H 0.051 0.949 14 C -0.116 4.116 15 C -0.132 4.132 16 C 0.172 3.828 17 N -0.610 5.610 18 C -0.239 4.239 19 H 0.075 0.925 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.971 3.029 23 H -0.269 1.269 24 H -0.295 1.295 25 H -0.287 1.287 26 S 0.243 5.757 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.167 0.833 35 H 0.143 0.857 36 H 0.410 0.590 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.039 0.961 44 H -0.008 1.008 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 9.413 -27.852 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 C -0.208 4.208 4 C -0.296 4.296 5 C -0.191 4.191 6 C -0.089 4.089 7 C -0.424 4.424 8 C 0.369 3.631 9 O -0.466 6.466 10 N -0.356 5.356 11 C 0.003 3.997 12 C 0.040 3.960 13 H 0.069 0.931 14 C -0.154 4.154 15 C -0.170 4.170 16 C 0.047 3.953 17 N -0.334 5.334 18 C -0.369 4.369 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.193 1.193 24 H -0.222 1.222 25 H -0.213 1.213 26 S 0.512 5.488 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.184 0.816 35 H 0.161 0.839 36 H 0.246 0.754 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.010 0.990 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.482 9.840 -26.704 28.810 hybrid contribution 0.932 -2.361 0.481 2.584 sum -3.550 7.479 -26.222 27.498 Atomic orbital electron populations 1.21976 0.93119 1.02550 1.03176 1.19929 0.96459 0.96032 0.92409 1.21968 1.01539 0.94071 1.03182 1.24762 1.03177 1.00982 1.00721 1.20113 1.02404 0.97926 0.98667 1.20921 0.97600 0.99213 0.91144 1.24455 1.14536 1.07578 0.95842 1.17503 0.78801 0.81844 0.84992 1.90802 1.41977 1.31265 1.82556 1.45728 1.52796 1.31010 1.06029 1.21786 0.99550 0.99840 0.78552 1.21344 0.96697 0.93671 0.84273 0.93136 1.22664 1.01426 0.93492 0.97815 1.22887 1.01946 0.97075 0.95084 1.21303 0.93997 0.85163 0.94823 1.44759 1.71933 1.14698 1.02060 1.19323 1.23938 0.95738 0.97862 0.90715 1.25662 0.99666 1.01404 0.98563 1.70139 1.40167 1.37174 1.11778 0.85119 0.77128 0.79543 0.78235 1.19305 1.22195 1.21320 1.82646 1.45362 1.24818 0.95961 0.92575 0.90018 0.92473 0.87743 0.92381 0.90052 0.92533 0.81558 0.83917 0.75386 0.94141 0.94421 0.91485 0.87617 0.90983 0.89689 0.94265 0.99024 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.08 71.98 0.65 -0.61 16 2 C -0.03 -0.26 3.25 -11.54 -0.04 -0.30 16 3 C -0.15 -1.22 9.09 71.98 0.65 -0.57 16 4 C -0.18 -2.63 4.95 24.68 0.12 -2.51 16 5 C -0.16 -2.73 9.95 21.08 0.21 -2.52 16 6 C -0.05 -1.29 10.01 21.72 0.22 -1.07 16 7 C -0.30 -8.03 6.45 24.08 0.16 -7.88 16 8 C 0.58 20.30 7.78 86.42 0.67 20.97 16 9 O -0.58 -25.97 16.84 -4.35 -0.07 -26.04 16 10 N -0.70 -22.55 5.40 -467.17 -2.52 -25.08 16 11 C 0.13 5.24 5.09 86.38 0.44 5.68 16 12 C 0.15 5.79 3.22 45.34 0.15 5.94 16 13 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 14 C -0.12 -3.55 6.07 31.82 0.19 -3.35 16 15 C -0.13 -4.51 7.10 32.03 0.23 -4.29 16 16 C 0.17 8.40 5.42 86.86 0.47 8.87 16 17 N -0.61 -31.05 3.13 -668.26 -2.09 -33.14 16 18 C -0.24 -13.58 9.73 84.03 0.82 -12.77 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 20 C -0.06 -3.43 5.47 84.86 0.46 -2.97 16 21 N -0.94 -57.48 10.54 21.65 0.23 -57.25 16 22 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 S 0.24 4.25 21.37 -56.49 -1.21 3.04 16 27 H 0.06 0.52 7.89 -2.38 -0.02 0.50 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.50 7.91 -2.38 -0.02 0.48 16 34 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.41 10.08 7.36 -92.71 -0.68 9.40 16 37 H 0.04 1.83 8.03 -2.39 -0.02 1.81 16 38 H 0.04 1.79 7.86 -2.39 -0.02 1.77 16 39 H 0.07 2.04 7.78 -2.39 -0.02 2.02 16 40 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.04 2.16 6.86 -2.39 -0.02 2.14 16 44 H -0.01 -0.45 8.08 -2.39 -0.02 -0.47 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -74.58 378.04 2.06 -72.51 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.29 Total: 14.14 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.41 Total: 2.64 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -4.38 Total: -115.47 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.07 Total: -26.04 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.21 Total: 3.04 kcal Total: -74.58 2.06 -72.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028340678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.103 kcal (2) G-P(sol) polarization free energy of solvation -74.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds