Wall clock time and date at job start Tue Mar 31 2020 13:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 C 1.33819 * 124.52281 * 90.00238 * 4 3 2 6 6 C 1.37470 * 115.10191 * 180.02562 * 5 4 3 7 7 C 1.36641 * 113.29808 * 359.97438 * 6 5 4 8 8 C 1.46584 * 125.45777 * 180.02562 * 7 6 5 9 9 O 1.21700 * 120.00157 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00009 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00119 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47378 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.63956 * 305.70501 * 12 11 10 14 14 C 1.55154 * 110.71960 * 182.55715 * 12 11 10 15 15 C 1.54912 * 101.58038 * 206.13545 * 14 12 11 16 16 N 1.47427 * 104.83232 * 37.01436 * 15 14 12 17 17 C 1.36932 * 125.64994 * 155.90366 * 16 15 14 18 18 H 1.08000 * 120.00191 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99917 * 359.97337 * 17 16 15 20 20 N 1.31614 * 120.00190 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46921 * 59.99844 * 21 19 17 23 23 H 1.48494 * 109.47291 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46870 * 300.00401 * 21 19 17 25 25 C 1.47317 * 108.73390 * 335.71467 * 16 15 14 26 26 S 1.70621 * 124.52527 * 269.70256 * 4 3 2 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08008 * 122.44577 * 359.97438 * 5 4 3 35 35 H 1.08001 * 123.34970 * 180.02562 * 6 5 4 36 36 H 0.97004 * 119.99960 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.47508 * 300.00108 * 11 10 8 38 38 H 1.09000 * 109.47588 * 60.00115 * 11 10 8 39 39 H 1.08992 * 111.01099 * 324.21100 * 14 12 11 40 40 H 1.09001 * 111.00298 * 88.03345 * 14 12 11 41 41 H 1.09000 * 110.36793 * 155.84886 * 15 14 12 42 42 H 1.09000 * 110.36829 * 278.06598 * 15 14 12 43 43 H 0.97005 * 120.00102 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.06539 * 241.87391 * 25 16 15 45 45 H 1.09000 * 109.85348 * 120.61164 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3059 1.4423 -1.1016 6 6 5.6619 1.4418 -0.8760 7 6 5.9891 1.4421 0.4507 8 6 7.3520 1.4422 0.9904 9 8 8.3058 1.4416 0.2346 10 7 7.5487 1.4430 2.3237 11 6 8.9108 1.4425 2.8631 12 6 8.8538 1.4442 4.3921 13 1 8.2453 2.2733 4.7530 14 6 10.2822 1.5085 4.9945 15 6 10.0692 0.8338 6.3726 16 7 9.0962 -0.2443 6.1186 17 6 8.9435 -1.3759 6.8744 18 1 8.1982 -2.1093 6.6042 19 6 9.7467 -1.5804 7.9880 20 7 10.6546 -0.6864 8.3177 21 14 9.5379 -3.1238 9.0195 22 1 9.7837 -4.3204 8.1752 23 1 10.5079 -3.1028 10.1437 24 1 8.1556 -3.1748 9.5598 25 6 8.3119 0.0990 4.9197 26 16 4.5135 1.4499 1.4067 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.8837 1.4418 -2.0957 35 1 6.3957 1.4421 -1.6685 36 1 6.7885 1.4431 2.9262 37 1 9.4373 0.5520 2.5198 38 1 9.4384 2.3319 2.5187 39 1 10.9883 0.9422 4.3873 40 1 10.6109 2.5412 5.1113 41 1 11.0074 0.4190 6.7410 42 1 9.6655 1.5507 7.0877 43 1 11.2157 -0.8292 9.0960 44 1 7.2579 0.1999 5.1786 45 1 8.4372 -0.6741 4.1616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028570900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:21 Heat of formation + Delta-G solvation = 0.856255 kcal Electronic energy + Delta-G solvation = -23968.528641 eV Core-core repulsion = 20498.516960 eV Total energy + Delta-G solvation = -3470.011682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.79920 -38.31973 -37.53597 -35.22901 -34.65648 -32.55091 -30.81283 -29.78515 -28.43432 -27.09536 -25.47009 -24.18252 -23.38073 -21.84945 -21.43703 -20.25748 -19.88393 -19.10374 -18.04526 -16.83251 -16.51539 -15.82017 -15.59703 -15.28915 -15.07175 -14.70097 -14.53060 -14.09955 -13.91135 -13.62961 -13.43111 -13.03974 -12.88385 -12.55413 -12.51256 -12.15320 -11.84542 -11.77189 -11.70089 -11.59195 -11.49650 -11.24948 -11.00469 -10.95849 -10.78989 -10.46587 -10.18537 -10.07747 -9.98736 -9.78100 -9.52106 -9.12289 -8.84057 -8.78778 -8.64927 -6.83949 -5.65404 -3.07092 0.29735 1.22024 1.64890 2.18368 3.14427 3.18370 3.40517 3.44596 3.46022 4.25790 4.48373 4.52869 4.61757 4.74028 4.90601 5.05512 5.10721 5.12642 5.24632 5.26939 5.35096 5.36708 5.39387 5.52128 5.64536 5.66127 5.68645 5.79229 5.85944 5.87245 5.92250 6.05822 6.10304 6.13836 6.33753 6.38418 6.54300 6.58121 6.70935 6.89654 7.45514 7.51033 7.61818 7.85436 8.13995 8.36253 9.22021 9.82714 10.47740 11.38554 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.002615 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.123061 B =10706.886760 C =12228.079500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.194 4.194 5 C -0.154 4.154 6 C -0.055 4.055 7 C -0.265 4.265 8 C 0.588 3.412 9 O -0.534 6.534 10 N -0.720 5.720 11 C 0.133 3.867 12 C -0.116 4.116 13 H 0.076 0.924 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.140 3.860 26 S 0.205 5.795 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.398 0.602 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.253 0.747 44 H 0.018 0.982 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.017 6.943 -17.554 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.091 4.091 4 C -0.313 4.313 5 C -0.184 4.184 6 C -0.088 4.088 7 C -0.385 4.385 8 C 0.373 3.627 9 O -0.413 6.413 10 N -0.371 5.371 11 C 0.010 3.990 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.014 3.986 26 S 0.473 5.527 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.233 0.767 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.520 6.849 -16.300 24.198 hybrid contribution -0.300 -0.760 -0.745 1.105 sum -16.821 6.090 -17.045 24.710 Atomic orbital electron populations 1.21780 0.95255 1.02055 1.01939 1.21574 0.96006 0.95449 1.02942 1.20260 0.87053 0.98185 1.03581 1.24266 1.01164 1.08046 0.97853 1.19941 0.92567 1.06401 0.99532 1.20733 0.96144 0.96706 0.95190 1.24650 0.96986 1.18773 0.98128 1.16953 0.86702 0.76613 0.82401 1.90822 1.41816 1.50511 1.58130 1.45975 1.10193 1.74877 1.06034 1.21523 0.81774 1.02410 0.93302 1.22461 0.99686 0.99203 0.92144 0.90546 1.23005 0.93918 1.00219 1.00240 1.21932 0.96882 0.88581 0.89888 1.44563 1.39244 1.21072 1.28161 1.19033 1.15537 0.95782 1.04813 0.90593 1.24788 0.98665 0.98659 0.98574 1.69782 1.24461 1.34688 1.28212 0.86148 0.77210 0.82419 0.79696 1.21148 1.21554 1.21228 1.21395 0.94254 0.92744 0.90213 1.83123 0.94225 1.67842 1.07475 0.92616 0.92530 0.92374 0.91514 0.91461 0.89801 0.90529 0.83960 0.83017 0.76747 0.90901 0.91317 0.91767 0.92056 0.87487 0.97002 0.93665 0.96367 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.74 5.92 -26.74 -0.16 -0.90 16 3 C -0.05 -0.32 5.64 -27.89 -0.16 -0.48 16 4 C -0.19 -1.64 5.53 -35.86 -0.20 -1.84 16 5 C -0.15 -1.36 9.99 -41.41 -0.41 -1.77 16 6 C -0.05 -0.60 10.01 -40.44 -0.40 -1.00 16 7 C -0.26 -3.25 6.45 -36.79 -0.24 -3.49 16 8 C 0.59 8.78 7.78 -12.90 -0.10 8.68 16 9 O -0.53 -9.68 16.84 5.19 0.09 -9.59 16 10 N -0.72 -10.04 5.43 -61.65 -0.33 -10.38 16 11 C 0.13 2.02 5.00 -4.04 -0.02 2.00 16 12 C -0.12 -1.94 2.98 -88.78 -0.26 -2.20 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.13 -2.50 6.54 -24.58 -0.16 -2.66 16 15 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 16 N -0.60 -15.47 3.40 -169.83 -0.58 -16.05 16 17 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 21 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.14 2.87 6.66 -2.90 -0.02 2.85 16 26 S 0.21 1.97 22.10 -107.50 -2.38 -0.41 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.40 4.90 7.51 -40.82 -0.31 4.60 16 37 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.03 0.53 7.73 -51.93 -0.40 0.12 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -32.12 379.93 -11.28 -43.41 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.31 Total: 0.97 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.03 Total: -4.40 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.35 Total: -52.78 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.12 -11.28 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028570900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.262 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds