Wall clock time and date at job start Tue Mar 31 2020 13:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 C 1.33819 * 124.52281 * 90.00238 * 4 3 2 6 6 C 1.37470 * 115.10191 * 180.02562 * 5 4 3 7 7 C 1.36641 * 113.29808 * 359.97438 * 6 5 4 8 8 C 1.46584 * 125.45777 * 180.02562 * 7 6 5 9 9 O 1.21700 * 120.00157 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00009 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00119 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47378 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.63956 * 305.70501 * 12 11 10 14 14 C 1.55154 * 110.71960 * 182.55715 * 12 11 10 15 15 C 1.54912 * 101.58038 * 206.13545 * 14 12 11 16 16 N 1.47427 * 104.83232 * 37.01436 * 15 14 12 17 17 C 1.36932 * 125.64994 * 155.90366 * 16 15 14 18 18 H 1.08000 * 120.00191 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99917 * 359.97337 * 17 16 15 20 20 N 1.31614 * 120.00190 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46921 * 59.99844 * 21 19 17 23 23 H 1.48494 * 109.47291 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46870 * 300.00401 * 21 19 17 25 25 C 1.47317 * 108.73390 * 335.71467 * 16 15 14 26 26 S 1.70621 * 124.52527 * 269.70256 * 4 3 2 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08008 * 122.44577 * 359.97438 * 5 4 3 35 35 H 1.08001 * 123.34970 * 180.02562 * 6 5 4 36 36 H 0.97004 * 119.99960 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.47508 * 300.00108 * 11 10 8 38 38 H 1.09000 * 109.47588 * 60.00115 * 11 10 8 39 39 H 1.08992 * 111.01099 * 324.21100 * 14 12 11 40 40 H 1.09001 * 111.00298 * 88.03345 * 14 12 11 41 41 H 1.09000 * 110.36793 * 155.84886 * 15 14 12 42 42 H 1.09000 * 110.36829 * 278.06598 * 15 14 12 43 43 H 0.97005 * 120.00102 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.06539 * 241.87391 * 25 16 15 45 45 H 1.09000 * 109.85348 * 120.61164 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3059 1.4423 -1.1016 6 6 5.6619 1.4418 -0.8760 7 6 5.9891 1.4421 0.4507 8 6 7.3520 1.4422 0.9904 9 8 8.3058 1.4416 0.2346 10 7 7.5487 1.4430 2.3237 11 6 8.9108 1.4425 2.8631 12 6 8.8538 1.4442 4.3921 13 1 8.2453 2.2733 4.7530 14 6 10.2822 1.5085 4.9945 15 6 10.0692 0.8338 6.3726 16 7 9.0962 -0.2443 6.1186 17 6 8.9435 -1.3759 6.8744 18 1 8.1982 -2.1093 6.6042 19 6 9.7467 -1.5804 7.9880 20 7 10.6546 -0.6864 8.3177 21 14 9.5379 -3.1238 9.0195 22 1 9.7837 -4.3204 8.1752 23 1 10.5079 -3.1028 10.1437 24 1 8.1556 -3.1748 9.5598 25 6 8.3119 0.0990 4.9197 26 16 4.5135 1.4499 1.4067 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.8837 1.4418 -2.0957 35 1 6.3957 1.4421 -1.6685 36 1 6.7885 1.4431 2.9262 37 1 9.4373 0.5520 2.5198 38 1 9.4384 2.3319 2.5187 39 1 10.9883 0.9422 4.3873 40 1 10.6109 2.5412 5.1113 41 1 11.0074 0.4190 6.7410 42 1 9.6655 1.5507 7.0877 43 1 11.2157 -0.8292 9.0960 44 1 7.2579 0.1999 5.1786 45 1 8.4372 -0.6741 4.1616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028570900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:20 Heat of formation + Delta-G solvation = -17.553862 kcal Electronic energy + Delta-G solvation = -23969.326964 eV Core-core repulsion = 20498.516960 eV Total energy + Delta-G solvation = -3470.810004 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94755 -39.41351 -38.82550 -36.13183 -35.75902 -34.35807 -31.93421 -31.20605 -29.93934 -28.09099 -27.08471 -25.36837 -24.49473 -22.60384 -22.33829 -21.88306 -21.35930 -20.16212 -19.07743 -18.70488 -17.52220 -16.97079 -16.81223 -16.62726 -16.13711 -15.88208 -15.72545 -15.44697 -14.78028 -14.74730 -14.35708 -14.29049 -14.12959 -13.56265 -13.55426 -13.47223 -13.28896 -13.13064 -12.82788 -12.73352 -12.65079 -12.36740 -12.07584 -12.05557 -11.94348 -11.89812 -11.83800 -11.60996 -11.51722 -11.41462 -11.15682 -10.73444 -10.28803 -9.64655 -9.55202 -8.88736 -7.77429 -5.21687 -0.53050 0.44166 0.89183 1.36926 1.46259 1.49439 1.55859 2.04369 2.13965 2.49572 3.31759 3.57782 3.66618 3.74053 3.84742 3.94756 4.05194 4.06673 4.16362 4.29562 4.41250 4.43191 4.61767 4.62894 4.67874 4.72768 4.75931 4.85149 4.88602 4.96368 5.01716 5.03966 5.11614 5.15753 5.23505 5.25856 5.29525 5.37073 5.42344 5.45970 5.46939 5.65844 5.82523 6.31611 6.35805 7.02298 7.11140 7.78512 8.42205 9.24313 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.002615 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.123061 B =10706.886760 C =12228.079500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.051 4.051 7 C -0.302 4.302 8 C 0.587 3.413 9 O -0.575 6.575 10 N -0.715 5.715 11 C 0.144 3.856 12 C -0.095 4.095 13 H 0.097 0.903 14 C -0.121 4.121 15 C 0.152 3.848 16 N -0.628 5.628 17 C -0.241 4.241 18 H 0.079 0.921 19 C -0.068 4.068 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.136 3.864 26 S 0.221 5.779 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.150 0.850 36 H 0.407 0.593 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.072 0.928 42 H -0.008 1.008 43 H 0.247 0.753 44 H 0.029 0.971 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.386 7.399 -18.741 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.301 4.301 5 C -0.189 4.189 6 C -0.085 4.085 7 C -0.422 4.422 8 C 0.375 3.625 9 O -0.457 6.457 10 N -0.366 5.366 11 C 0.020 3.980 12 C -0.115 4.115 13 H 0.115 0.885 14 C -0.160 4.160 15 C 0.027 3.973 16 N -0.354 5.354 17 C -0.370 4.370 18 H 0.097 0.903 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.011 3.989 26 S 0.490 5.510 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.243 0.757 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.010 0.990 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -18.928 7.312 -17.493 26.791 hybrid contribution 0.330 -0.909 -0.418 1.053 sum -18.598 6.403 -17.910 26.602 Atomic orbital electron populations 1.21768 0.94351 1.02243 1.02518 1.21560 0.96778 0.95169 1.02398 1.20390 0.85219 0.98529 1.04927 1.24653 1.02325 1.05909 0.97180 1.20129 0.91549 1.06381 1.00885 1.20942 0.97272 0.95564 0.94746 1.24473 0.96688 1.21897 0.99176 1.17290 0.87467 0.75567 0.82165 1.90789 1.43381 1.52565 1.58946 1.45866 1.09968 1.74601 1.06123 1.21295 0.82541 1.02274 0.91881 1.22302 0.98431 0.97727 0.92998 0.88496 1.22848 0.95142 1.01276 0.96770 1.21738 0.94877 0.88102 0.92594 1.44884 1.40426 1.20852 1.29264 1.19413 1.15464 0.96813 1.05306 0.90320 1.25635 0.98693 1.01707 0.99964 1.70042 1.25167 1.36285 1.28349 0.85130 0.77225 0.78978 0.77863 1.20451 1.21881 1.20297 1.21560 0.94353 0.94555 0.88414 1.83023 0.92923 1.67489 1.07587 0.91715 0.92285 0.92440 0.92545 0.91600 0.87961 0.89698 0.81482 0.83265 0.75718 0.92489 0.90112 0.91828 0.89028 0.91015 0.99041 0.94300 0.95341 0.96183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 3 C -0.05 -0.49 5.64 29.84 0.17 -0.32 16 4 C -0.18 -2.62 5.53 24.68 0.14 -2.48 16 5 C -0.16 -2.45 9.99 21.08 0.21 -2.24 16 6 C -0.05 -1.06 10.01 21.71 0.22 -0.84 16 7 C -0.30 -7.17 6.45 24.07 0.16 -7.01 16 8 C 0.59 17.34 7.78 86.42 0.67 18.01 16 9 O -0.57 -21.00 16.84 -4.35 -0.07 -21.07 16 10 N -0.71 -19.20 5.43 -467.17 -2.53 -21.73 16 11 C 0.14 4.18 5.00 86.38 0.43 4.61 16 12 C -0.10 -3.06 2.98 -9.60 -0.03 -3.08 16 13 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 14 C -0.12 -4.38 6.54 31.99 0.21 -4.17 16 15 C 0.15 7.45 5.89 86.86 0.51 7.96 16 16 N -0.63 -32.51 3.40 -691.22 -2.35 -34.86 16 17 C -0.24 -13.65 10.28 84.03 0.86 -12.79 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 19 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 20 N -0.95 -56.84 10.09 21.65 0.22 -56.62 16 21 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 C 0.14 5.50 6.66 86.67 0.58 6.07 16 26 S 0.22 3.87 22.10 -56.49 -1.25 2.62 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.41 9.43 7.51 -92.70 -0.70 8.73 16 37 H 0.06 1.87 8.01 -2.38 -0.02 1.85 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 39 H 0.06 2.31 8.05 -2.39 -0.02 2.29 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.02 0.83 7.73 -2.39 -0.02 0.82 16 Total: -1.00 -70.90 379.93 1.80 -69.10 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.28 Total: 15.76 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.49 Total: -1.12 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -4.67 Total: -113.22 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.07 Total: -21.07 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.25 Total: 2.62 kcal Total: -70.90 1.80 -69.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028570900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.547 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds