Wall clock time and date at job start Tue Mar 31 2020 13:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47312 * 2 1 4 4 S 1.70613 * 124.52131 * 269.97845 * 3 2 1 5 5 C 1.75842 * 91.56175 * 180.02562 * 4 3 2 6 6 C 1.46574 * 125.45693 * 179.97438 * 5 4 3 7 7 O 1.21706 * 119.99628 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00307 * 0.02562 * 6 5 4 9 9 C 1.46504 * 120.00257 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47171 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.91254 * 57.45208 * 10 9 8 12 12 C 1.55164 * 111.00283 * 181.35255 * 10 9 8 13 13 C 1.54322 * 102.93965 * 153.57810 * 12 10 9 14 14 N 1.47020 * 107.27467 * 337.80777 * 13 12 10 15 15 C 1.36939 * 125.65087 * 179.20508 * 14 13 12 16 16 H 1.07997 * 119.99591 * 174.35340 * 15 14 13 17 17 C 1.38813 * 119.99732 * 354.35924 * 15 14 13 18 18 N 1.31615 * 120.00275 * 7.02877 * 17 15 14 19 19 Si 1.86799 * 119.99623 * 187.02776 * 17 15 14 20 20 H 1.48500 * 109.47076 * 94.98809 * 19 17 15 21 21 H 1.48498 * 109.46809 * 214.98525 * 19 17 15 22 22 H 1.48499 * 109.47087 * 334.98434 * 19 17 15 23 23 C 1.47429 * 108.70230 * 358.93934 * 14 13 12 24 24 C 1.36654 * 109.07941 * 0.24378 * 5 4 3 25 25 C 1.33818 * 124.52212 * 89.99917 * 3 2 1 26 26 C 1.50702 * 122.44623 * 359.95698 * 25 3 2 27 27 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47059 * 299.99452 * 1 2 3 29 29 H 1.08990 * 109.47283 * 59.99631 * 1 2 3 30 30 H 1.08998 * 109.47081 * 239.99761 * 2 1 3 31 31 H 1.08999 * 109.47013 * 120.00269 * 2 1 3 32 32 H 0.96996 * 120.00262 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.46528 * 60.00507 * 9 8 6 34 34 H 1.08999 * 109.47234 * 300.00544 * 9 8 6 35 35 H 1.08996 * 110.71724 * 271.94416 * 12 10 9 36 36 H 1.08993 * 110.71742 * 35.04068 * 12 10 9 37 37 H 1.09000 * 109.88266 * 218.38951 * 13 12 10 38 38 H 1.09003 * 109.88108 * 97.22299 * 13 12 10 39 39 H 0.96992 * 120.00186 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36346 * 142.96798 * 23 14 13 41 41 H 1.08999 * 110.37028 * 265.18056 * 23 14 13 42 42 H 1.07998 * 123.34545 * 179.76412 * 24 5 4 43 43 H 1.09006 * 109.47239 * 90.00097 * 26 25 3 44 44 H 1.09003 * 109.47066 * 209.99999 * 26 25 3 45 45 H 1.09003 * 109.47767 * 329.99995 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3552 2.3322 -1.4057 5 6 2.8475 3.7230 -0.4490 6 6 3.3029 5.0077 -0.9882 7 8 3.6214 5.9064 -0.2319 8 7 3.3689 5.1936 -2.3214 9 6 3.8235 6.4779 -2.8603 10 6 3.8043 6.4249 -4.3893 11 1 2.8076 6.1819 -4.7577 12 6 4.3127 7.7583 -4.9984 13 6 4.8638 7.3227 -6.3724 14 7 5.1660 5.8865 -6.2862 15 6 5.6607 5.1126 -7.3019 16 1 5.9359 4.0854 -7.1131 17 6 5.8087 5.6484 -8.5738 18 7 5.6060 6.9333 -8.7744 19 14 6.2954 4.5457 -10.0009 20 1 5.0750 4.0958 -10.7175 21 1 7.1677 5.3016 -10.9353 22 1 7.0305 3.3633 -9.4845 23 6 4.8543 5.4188 -4.9233 24 6 2.7431 3.4122 0.8776 25 6 2.2852 2.1358 1.1025 26 6 2.0877 1.5802 2.4894 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.1147 4.4775 -2.9242 33 1 4.8384 6.6774 -2.5161 34 1 3.1604 7.2715 -2.5163 35 1 3.4917 8.4651 -5.1186 36 1 5.1022 8.1877 -4.3817 37 1 5.7725 7.8796 -6.6009 38 1 4.1149 7.4981 -7.1448 39 1 5.7090 7.3076 -9.6632 40 1 4.4348 4.4132 -4.9540 41 1 5.7496 5.4367 -4.3019 42 1 2.9923 4.1020 1.6703 43 1 3.0088 1.1031 2.8243 44 1 1.8291 2.3900 3.1718 45 1 1.2824 0.8458 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028971525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:58 Heat of formation + Delta-G solvation = 0.104961 kcal Electronic energy + Delta-G solvation = -24223.789464 eV Core-core repulsion = 20753.745204 eV Total energy + Delta-G solvation = -3470.044260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.85682 -38.71899 -37.58598 -34.67696 -34.09310 -32.52916 -30.77855 -29.78839 -28.43033 -27.66168 -25.87309 -24.68739 -23.29193 -22.54315 -20.85409 -19.96964 -19.88953 -18.82604 -18.03200 -16.82481 -16.58702 -15.81563 -15.55748 -14.92513 -14.76715 -14.61495 -14.58375 -14.15001 -13.85413 -13.57255 -13.34762 -13.11278 -12.93643 -12.51504 -12.44572 -12.34584 -12.09573 -11.89564 -11.74833 -11.65028 -11.46800 -11.38950 -10.99019 -10.90529 -10.81352 -10.46297 -10.18177 -10.04843 -9.91981 -9.81525 -9.68099 -9.10042 -8.82054 -8.59097 -8.58072 -6.83623 -5.73245 -3.05640 0.31898 1.25485 1.68071 2.13668 3.14392 3.17383 3.39371 3.44519 3.46735 4.32111 4.48592 4.60809 4.67574 4.86448 4.91609 5.01370 5.09100 5.12498 5.22591 5.31925 5.38414 5.41661 5.44963 5.52371 5.54042 5.60153 5.65564 5.72362 5.80513 5.88029 6.02040 6.04838 6.09037 6.21575 6.33175 6.38473 6.48862 6.52791 6.66869 6.89786 7.45986 7.55027 7.63519 7.82023 8.13997 8.25307 9.21121 9.81708 10.48300 11.38994 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002680 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.112289 B =10446.927161 C =11770.261734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.197 4.197 4 S 0.204 5.796 5 C -0.263 4.263 6 C 0.588 3.412 7 O -0.535 6.535 8 N -0.720 5.720 9 C 0.133 3.867 10 C -0.119 4.119 11 H 0.080 0.920 12 C -0.134 4.134 13 C 0.176 3.824 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.142 3.858 24 C -0.051 4.051 25 C -0.123 4.123 26 C -0.093 4.093 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.252 0.748 40 H 0.035 0.965 41 H 0.019 0.981 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 -11.465 20.090 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.317 4.317 4 S 0.475 5.525 5 C -0.384 4.384 6 C 0.374 3.626 7 O -0.414 6.414 8 N -0.370 5.370 9 C 0.010 3.990 10 C -0.139 4.139 11 H 0.099 0.901 12 C -0.173 4.173 13 C 0.051 3.949 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.015 3.985 24 C -0.084 4.084 25 C -0.135 4.135 26 C -0.152 4.152 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.169 0.831 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.478 -11.054 18.766 24.169 hybrid contribution 0.300 -0.564 0.381 0.744 sum -10.178 -11.618 19.148 24.601 Atomic orbital electron populations 1.21794 0.94077 1.02142 1.02638 1.20138 0.96352 0.89422 1.03532 1.24069 1.08103 1.02108 0.97401 1.83132 1.59824 1.02342 1.07251 1.24568 1.16216 0.99476 0.98101 1.16938 0.77705 0.85558 0.82390 1.90819 1.49615 1.42844 1.58114 1.45957 1.67596 1.17437 1.06032 1.21457 1.00164 0.83949 0.93403 1.22629 1.00506 0.99000 0.91743 0.90134 1.22853 0.99839 0.95106 0.99486 1.21163 0.98758 0.84346 0.90584 1.44484 1.76081 1.05779 1.06882 1.19056 1.35565 0.93959 0.87234 0.90462 1.24825 1.01869 0.96184 0.97480 1.69974 1.55486 1.10141 1.21108 0.86124 0.77782 0.79502 0.82538 1.21611 1.21764 1.20626 1.21572 0.94154 0.95019 0.87739 1.20591 0.96865 0.95740 0.95226 1.18643 1.04397 0.94000 0.96489 1.20509 1.02063 1.01005 0.91595 0.91871 0.92216 0.92276 0.90542 0.89790 0.76647 0.91042 0.91355 0.91918 0.92149 0.94083 0.93321 0.93737 0.94661 0.96300 0.83089 0.91242 0.91363 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.90 37.16 0.37 -0.49 16 2 C -0.06 -0.36 5.72 -27.88 -0.16 -0.52 16 3 C -0.20 -1.77 5.53 -35.86 -0.20 -1.96 16 4 S 0.20 2.05 22.10 -107.50 -2.38 -0.33 16 5 C -0.26 -3.29 6.45 -36.79 -0.24 -3.52 16 6 C 0.59 8.78 7.78 -12.90 -0.10 8.68 16 7 O -0.53 -9.62 16.84 5.18 0.09 -9.53 16 8 N -0.72 -10.04 5.40 -61.65 -0.33 -10.37 16 9 C 0.13 1.99 5.12 -4.04 -0.02 1.97 16 10 C -0.12 -2.00 3.10 -88.47 -0.27 -2.27 16 11 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 12 C -0.13 -2.44 6.42 -24.89 -0.16 -2.60 16 13 C 0.18 4.25 5.38 -3.07 -0.02 4.24 16 14 N -0.61 -15.41 3.39 -170.07 -0.58 -15.98 16 15 C -0.23 -6.40 10.26 -15.06 -0.15 -6.56 16 16 H 0.08 2.08 7.84 -52.49 -0.41 1.66 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -27.05 10.36 55.49 0.57 -26.47 16 19 Si 0.91 22.03 29.56 -169.99 -5.02 17.00 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.14 2.86 6.41 -2.53 -0.02 2.84 16 24 C -0.05 -0.57 9.80 -40.44 -0.40 -0.97 16 25 C -0.12 -1.14 5.78 -106.45 -0.62 -1.76 16 26 C -0.09 -0.61 9.55 36.01 0.34 -0.27 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.35 7.80 -51.93 -0.41 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.46 7.25 -51.93 -0.38 0.08 16 32 H 0.40 5.01 7.45 -40.82 -0.30 4.71 16 33 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 37 H 0.04 1.10 7.62 -51.93 -0.40 0.70 16 38 H 0.05 1.29 7.29 -51.93 -0.38 0.92 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 42 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 45 H 0.07 0.37 6.86 -51.93 -0.36 0.01 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -32.46 377.56 -10.94 -43.40 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.24 Total: 0.09 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.73 Total: -3.50 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.34 Total: -52.82 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.38 Total: -0.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.46 -10.94 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028971525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.502 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds