Wall clock time and date at job start Tue Mar 31 2020 13:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47312 * 2 1 4 4 S 1.70613 * 124.52131 * 269.97845 * 3 2 1 5 5 C 1.75842 * 91.56175 * 180.02562 * 4 3 2 6 6 C 1.46574 * 125.45693 * 179.97438 * 5 4 3 7 7 O 1.21706 * 119.99628 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00307 * 0.02562 * 6 5 4 9 9 C 1.46504 * 120.00257 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47171 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.91254 * 57.45208 * 10 9 8 12 12 C 1.55164 * 111.00283 * 181.35255 * 10 9 8 13 13 C 1.54322 * 102.93965 * 153.57810 * 12 10 9 14 14 N 1.47020 * 107.27467 * 337.80777 * 13 12 10 15 15 C 1.36939 * 125.65087 * 179.20508 * 14 13 12 16 16 H 1.07997 * 119.99591 * 174.35340 * 15 14 13 17 17 C 1.38813 * 119.99732 * 354.35924 * 15 14 13 18 18 N 1.31615 * 120.00275 * 7.02877 * 17 15 14 19 19 Si 1.86799 * 119.99623 * 187.02776 * 17 15 14 20 20 H 1.48500 * 109.47076 * 94.98809 * 19 17 15 21 21 H 1.48498 * 109.46809 * 214.98525 * 19 17 15 22 22 H 1.48499 * 109.47087 * 334.98434 * 19 17 15 23 23 C 1.47429 * 108.70230 * 358.93934 * 14 13 12 24 24 C 1.36654 * 109.07941 * 0.24378 * 5 4 3 25 25 C 1.33818 * 124.52212 * 89.99917 * 3 2 1 26 26 C 1.50702 * 122.44623 * 359.95698 * 25 3 2 27 27 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47059 * 299.99452 * 1 2 3 29 29 H 1.08990 * 109.47283 * 59.99631 * 1 2 3 30 30 H 1.08998 * 109.47081 * 239.99761 * 2 1 3 31 31 H 1.08999 * 109.47013 * 120.00269 * 2 1 3 32 32 H 0.96996 * 120.00262 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.46528 * 60.00507 * 9 8 6 34 34 H 1.08999 * 109.47234 * 300.00544 * 9 8 6 35 35 H 1.08996 * 110.71724 * 271.94416 * 12 10 9 36 36 H 1.08993 * 110.71742 * 35.04068 * 12 10 9 37 37 H 1.09000 * 109.88266 * 218.38951 * 13 12 10 38 38 H 1.09003 * 109.88108 * 97.22299 * 13 12 10 39 39 H 0.96992 * 120.00186 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36346 * 142.96798 * 23 14 13 41 41 H 1.08999 * 110.37028 * 265.18056 * 23 14 13 42 42 H 1.07998 * 123.34545 * 179.76412 * 24 5 4 43 43 H 1.09006 * 109.47239 * 90.00097 * 26 25 3 44 44 H 1.09003 * 109.47066 * 209.99999 * 26 25 3 45 45 H 1.09003 * 109.47767 * 329.99995 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3552 2.3322 -1.4057 5 6 2.8475 3.7230 -0.4490 6 6 3.3029 5.0077 -0.9882 7 8 3.6214 5.9064 -0.2319 8 7 3.3689 5.1936 -2.3214 9 6 3.8235 6.4779 -2.8603 10 6 3.8043 6.4249 -4.3893 11 1 2.8076 6.1819 -4.7577 12 6 4.3127 7.7583 -4.9984 13 6 4.8638 7.3227 -6.3724 14 7 5.1660 5.8865 -6.2862 15 6 5.6607 5.1126 -7.3019 16 1 5.9359 4.0854 -7.1131 17 6 5.8087 5.6484 -8.5738 18 7 5.6060 6.9333 -8.7744 19 14 6.2954 4.5457 -10.0009 20 1 5.0750 4.0958 -10.7175 21 1 7.1677 5.3016 -10.9353 22 1 7.0305 3.3633 -9.4845 23 6 4.8543 5.4188 -4.9233 24 6 2.7431 3.4122 0.8776 25 6 2.2852 2.1358 1.1025 26 6 2.0877 1.5802 2.4894 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.1147 4.4775 -2.9242 33 1 4.8384 6.6774 -2.5161 34 1 3.1604 7.2715 -2.5163 35 1 3.4917 8.4651 -5.1186 36 1 5.1022 8.1877 -4.3817 37 1 5.7725 7.8796 -6.6009 38 1 4.1149 7.4981 -7.1448 39 1 5.7090 7.3076 -9.6632 40 1 4.4348 4.4132 -4.9540 41 1 5.7496 5.4367 -4.3019 42 1 2.9923 4.1020 1.6703 43 1 3.0088 1.1031 2.8243 44 1 1.8291 2.3900 3.1718 45 1 1.2824 0.8458 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028971525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:57 Heat of formation + Delta-G solvation = -18.892117 kcal Electronic energy + Delta-G solvation = -24224.613239 eV Core-core repulsion = 20753.745204 eV Total energy + Delta-G solvation = -3470.868035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97439 -39.64312 -39.09406 -36.10892 -34.74430 -34.32832 -31.90374 -31.19748 -29.94257 -28.40476 -27.41331 -26.06321 -24.53736 -23.25996 -22.18042 -21.62119 -21.23988 -19.71665 -19.05299 -18.65530 -17.61851 -16.94965 -16.78417 -16.63002 -16.11901 -15.69494 -15.45158 -15.20395 -15.05680 -14.72158 -14.51433 -14.03305 -13.98993 -13.86740 -13.46547 -13.43658 -13.13167 -13.06049 -13.01169 -12.78554 -12.66777 -12.59625 -12.23388 -12.06267 -12.01141 -11.93411 -11.87301 -11.64551 -11.56858 -11.48774 -11.19431 -10.68753 -10.27000 -9.65044 -9.34239 -8.90133 -7.86574 -5.21121 -0.53063 0.45081 0.90179 1.31455 1.46056 1.47768 1.56765 2.03934 2.11620 2.49341 3.31336 3.56644 3.66614 3.73644 3.85604 3.99008 4.01115 4.09937 4.20430 4.40195 4.40944 4.45899 4.51345 4.60091 4.66600 4.75514 4.82405 4.86442 4.87768 4.91460 5.02094 5.02475 5.06386 5.06608 5.13028 5.25003 5.31526 5.39752 5.42250 5.46180 5.55149 5.66806 5.77335 6.19716 6.35176 7.01763 7.09855 7.77299 8.42297 9.24604 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002680 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.112289 B =10446.927161 C =11770.261734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.057 4.057 3 C -0.187 4.187 4 S 0.216 5.784 5 C -0.298 4.298 6 C 0.589 3.411 7 O -0.573 6.573 8 N -0.715 5.715 9 C 0.144 3.856 10 C -0.097 4.097 11 H 0.090 0.910 12 C -0.121 4.121 13 C 0.182 3.818 14 N -0.628 5.628 15 C -0.244 4.244 16 H 0.083 0.917 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.137 3.863 24 C -0.049 4.049 25 C -0.133 4.133 26 C -0.092 4.092 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.406 0.594 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.002 0.998 38 H 0.016 0.984 39 H 0.247 0.753 40 H 0.047 0.953 41 H 0.018 0.982 42 H 0.148 0.852 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.846 -13.788 21.496 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.307 4.307 4 S 0.487 5.513 5 C -0.418 4.418 6 C 0.376 3.624 7 O -0.455 6.455 8 N -0.366 5.366 9 C 0.021 3.979 10 C -0.117 4.117 11 H 0.108 0.892 12 C -0.160 4.160 13 C 0.057 3.943 14 N -0.355 5.355 15 C -0.373 4.373 16 H 0.101 0.899 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.192 1.192 23 C 0.012 3.988 24 C -0.084 4.084 25 C -0.145 4.145 26 C -0.150 4.150 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.242 0.758 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.021 0.979 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.166 0.834 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.651 -13.412 20.188 26.892 hybrid contribution 0.658 0.075 -0.001 0.663 sum -10.993 -13.337 20.187 26.575 Atomic orbital electron populations 1.21793 0.93344 1.03114 1.02268 1.20296 0.96862 0.87779 1.04689 1.24487 1.06463 1.03037 0.96671 1.83032 1.59493 1.01324 1.07485 1.24401 1.18761 0.99574 0.99052 1.17232 0.76908 0.86047 0.82168 1.90787 1.51518 1.44351 1.58882 1.45864 1.67317 1.17303 1.06080 1.21258 1.00173 0.84858 0.91646 1.22436 0.99679 0.96718 0.92872 0.89172 1.22717 1.00874 0.96337 0.96072 1.20942 0.96314 0.83871 0.93211 1.44811 1.75944 1.06332 1.08381 1.19463 1.35084 0.94491 0.88220 0.89940 1.25682 1.02642 0.97509 1.00075 1.70195 1.56875 1.11763 1.21104 0.85070 0.77369 0.77957 0.79021 1.21212 1.22307 1.19172 1.21739 0.95102 0.96541 0.85387 1.20794 0.96146 0.96596 0.94824 1.18874 1.04287 0.93260 0.98052 1.20577 1.03060 1.01496 0.89892 0.90270 0.92165 0.93109 0.89919 0.88111 0.75783 0.91814 0.90182 0.89427 0.90942 0.97933 0.96557 0.94383 0.93474 0.96464 0.83410 0.90401 0.90947 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.90 71.98 0.71 -0.58 16 2 C -0.06 -0.57 5.72 29.85 0.17 -0.40 16 3 C -0.19 -2.93 5.53 24.68 0.14 -2.79 16 4 S 0.22 4.02 22.10 -56.49 -1.25 2.77 16 5 C -0.30 -7.24 6.45 24.08 0.16 -7.09 16 6 C 0.59 17.34 7.78 86.42 0.67 18.01 16 7 O -0.57 -20.66 16.84 -4.37 -0.07 -20.73 16 8 N -0.72 -19.16 5.40 -467.17 -2.52 -21.68 16 9 C 0.14 4.08 5.12 86.38 0.44 4.52 16 10 C -0.10 -3.12 3.10 -9.40 -0.03 -3.15 16 11 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 12 C -0.12 -4.31 6.42 31.78 0.20 -4.11 16 13 C 0.18 9.00 5.38 86.73 0.47 9.46 16 14 N -0.63 -32.30 3.39 -691.98 -2.35 -34.65 16 15 C -0.24 -13.69 10.26 84.03 0.86 -12.83 16 16 H 0.08 4.42 7.84 -2.91 -0.02 4.39 16 17 C -0.07 -3.78 5.48 84.86 0.46 -3.31 16 18 N -0.95 -57.66 10.36 21.65 0.22 -57.44 16 19 Si 0.98 45.76 29.56 68.60 2.03 47.79 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C 0.14 5.45 6.41 86.85 0.56 6.01 16 24 C -0.05 -1.07 9.80 21.72 0.21 -0.86 16 25 C -0.13 -2.23 5.78 -21.05 -0.12 -2.35 16 26 C -0.09 -0.97 9.55 71.24 0.68 -0.29 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.53 7.80 -2.39 -0.02 0.51 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.73 7.25 -2.39 -0.02 0.71 16 32 H 0.41 9.65 7.45 -92.71 -0.69 8.96 16 33 H 0.06 1.94 8.10 -2.38 -0.02 1.92 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 37 H 0.00 0.14 7.62 -2.39 -0.02 0.12 16 38 H 0.02 0.90 7.29 -2.39 -0.02 0.88 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.02 0.71 8.01 -2.39 -0.02 0.69 16 42 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.07 0.72 8.13 -2.39 -0.02 0.70 16 45 H 0.08 0.63 6.86 -2.39 -0.02 0.61 16 Total: -1.00 -71.86 377.56 1.94 -69.93 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.29 Total: 13.80 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.59 Total: 0.23 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.65 Total: -113.77 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.07 Total: -20.73 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.25 Total: 2.77 kcal Total: -71.86 1.94 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028971525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.033 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds