Wall clock time and date at job start Tue Mar 31 2020 13:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46983 * 2 1 4 4 C 1.50695 * 109.46966 * 119.99454 * 2 1 3 5 5 C 1.37472 * 123.35597 * 305.31000 * 4 2 1 6 6 C 1.33817 * 115.10434 * 179.97438 * 5 4 2 7 7 S 1.70613 * 110.95487 * 0.02562 * 6 5 4 8 8 C 1.36654 * 123.35222 * 125.27098 * 4 2 1 9 9 C 1.46587 * 125.45353 * 359.77240 * 8 4 2 10 10 O 1.21695 * 120.00006 * 354.35695 * 9 8 4 11 11 N 1.34772 * 119.99443 * 174.35068 * 9 8 4 12 12 C 1.46501 * 119.99681 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47267 * 180.02562 * 12 11 9 14 14 H 1.08999 * 110.88799 * 54.29540 * 13 12 11 15 15 C 1.55160 * 111.00623 * 178.18074 * 13 12 11 16 16 C 1.54323 * 102.94226 * 153.57364 * 15 13 12 17 17 N 1.47015 * 107.27541 * 337.81082 * 16 15 13 18 18 C 1.36938 * 125.65326 * 178.97786 * 17 16 15 19 19 H 1.07995 * 120.00295 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99314 * 359.96995 * 18 17 16 21 21 N 1.31612 * 120.00623 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46861 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47103 * 119.99772 * 22 20 18 25 25 H 1.48499 * 109.47217 * 240.00070 * 22 20 18 26 26 C 1.47469 * 108.71926 * 358.97061 * 17 16 15 27 27 H 1.08994 * 109.47385 * 300.00317 * 1 2 3 28 28 H 1.09006 * 109.47013 * 60.00376 * 1 2 3 29 29 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47385 * 239.99683 * 2 1 3 31 31 H 1.09006 * 109.46940 * 299.99669 * 3 2 1 32 32 H 1.08994 * 109.47319 * 59.99643 * 3 2 1 33 33 H 1.09004 * 109.46956 * 179.97438 * 3 2 1 34 34 H 1.08000 * 122.44622 * 359.94956 * 5 4 2 35 35 H 1.07997 * 124.52014 * 180.02562 * 6 5 4 36 36 H 0.96995 * 120.00886 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47321 * 300.00169 * 12 11 9 38 38 H 1.09003 * 109.47257 * 60.00026 * 12 11 9 39 39 H 1.09003 * 110.71811 * 271.93897 * 15 13 12 40 40 H 1.09002 * 110.71967 * 35.02926 * 15 13 12 41 41 H 1.09012 * 109.88005 * 97.22760 * 16 15 13 42 42 H 1.08997 * 109.88169 * 218.23049 * 16 15 13 43 43 H 0.97009 * 120.00179 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.35067 * 265.25304 * 26 17 16 45 45 H 1.09004 * 110.40534 * 142.92244 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6585 -0.3656 2.5077 6 6 2.2041 -1.1074 3.4787 7 16 3.2363 -2.3001 2.8284 8 6 2.9041 -1.7617 1.1878 9 6 3.4679 -2.3498 -0.0308 10 8 3.0880 -1.9689 -1.1224 11 7 4.4072 -3.3123 0.0578 12 6 4.9711 -3.8997 -1.1601 13 6 6.0071 -4.9602 -0.7824 14 1 5.5777 -5.6996 -0.1064 15 6 6.5953 -5.6387 -2.0478 16 6 7.9900 -6.1007 -1.5756 17 7 8.3546 -5.2735 -0.4162 18 6 9.5112 -5.3811 0.3089 19 1 9.6863 -4.7229 1.1471 20 6 10.4585 -6.3362 -0.0333 21 7 10.2449 -7.1387 -1.0544 22 14 12.0360 -6.4835 0.9563 23 1 12.0330 -5.4743 2.0457 24 1 12.1268 -7.8446 1.5433 25 1 13.2020 -6.2492 0.0670 26 6 7.2687 -4.3083 -0.1632 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 0.9747 0.4449 2.7126 35 1 2.0162 -0.9694 4.5332 36 1 4.7099 -3.6161 0.9278 37 1 4.1745 -4.3620 -1.7431 38 1 5.4488 -3.1193 -1.7524 39 1 5.9866 -6.4925 -2.3457 40 1 6.6794 -4.9228 -2.8654 41 1 7.9540 -7.1508 -1.2852 42 1 8.7169 -5.9624 -2.3760 43 1 10.9071 -7.8059 -1.2937 44 1 7.4840 -3.3585 -0.6528 45 1 7.1327 -4.1615 0.9083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029002598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:32 Heat of formation + Delta-G solvation = 6.971041 kcal Electronic energy + Delta-G solvation = -24651.188093 eV Core-core repulsion = 21181.441568 eV Total energy + Delta-G solvation = -3469.746525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.11518 -38.55575 -37.50293 -34.74425 -34.18835 -32.54941 -30.45186 -29.48478 -28.19013 -27.27260 -25.79689 -24.77898 -23.43823 -21.95583 -21.28402 -20.10109 -19.99171 -18.77877 -17.82022 -16.82503 -16.41966 -15.84260 -15.60830 -15.18514 -14.66436 -14.50421 -14.33621 -13.81380 -13.73692 -13.71842 -13.45200 -13.05257 -12.78016 -12.66886 -12.34770 -12.26915 -12.00744 -11.75999 -11.66699 -11.40769 -11.28294 -11.15309 -10.90371 -10.85156 -10.81803 -10.37310 -10.11874 -9.97612 -9.88383 -9.67017 -9.59917 -9.18679 -8.87410 -8.66622 -8.61067 -6.83945 -5.72018 -3.05556 0.33283 1.28551 1.67996 2.18625 3.11227 3.18146 3.39072 3.44494 3.47039 4.48458 4.56552 4.68981 4.79082 4.92778 5.08020 5.10707 5.16545 5.21849 5.40441 5.43412 5.46875 5.50283 5.53630 5.67013 5.67451 5.78164 5.87457 5.89840 5.94043 6.01695 6.04545 6.11122 6.13261 6.32605 6.34406 6.48322 6.52269 6.55652 6.67430 6.89705 7.45627 7.55818 7.62495 7.82408 8.14854 8.25256 9.21520 9.81830 10.47814 11.39802 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002681 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.931371 B =10442.095422 C =11232.121773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.138 4.138 4 C -0.012 4.012 5 C -0.145 4.145 6 C -0.231 4.231 7 S 0.199 5.801 8 C -0.270 4.270 9 C 0.591 3.409 10 O -0.529 6.529 11 N -0.719 5.719 12 C 0.134 3.866 13 C -0.119 4.119 14 H 0.080 0.920 15 C -0.134 4.134 16 C 0.177 3.823 17 N -0.606 5.606 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.142 3.858 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.996 12.539 6.193 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.027 4.027 5 C -0.176 4.176 6 C -0.368 4.368 7 S 0.468 5.532 8 C -0.390 4.390 9 C 0.377 3.623 10 O -0.409 6.409 11 N -0.370 5.370 12 C 0.010 3.990 13 C -0.139 4.139 14 H 0.098 0.902 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.333 5.333 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.015 3.985 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.160 0.840 35 H 0.185 0.815 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.114 11.482 6.082 23.112 hybrid contribution 0.122 0.872 0.632 1.084 sum -18.992 12.355 6.714 23.630 Atomic orbital electron populations 1.21781 0.94413 1.01808 1.01543 1.20423 0.95681 0.96018 0.96765 1.21768 1.01296 0.94933 1.01519 1.19474 0.93860 0.93469 0.95913 1.19858 1.03884 1.02808 0.91070 1.25252 1.04585 1.02424 1.04563 1.83181 1.42364 1.31467 0.96144 1.24474 1.10664 1.06646 0.97224 1.16912 0.79028 0.79134 0.87231 1.90682 1.60974 1.61518 1.27725 1.45983 1.40865 1.39352 1.10765 1.21456 0.95864 0.95862 0.85784 1.22633 0.95087 0.96769 0.99407 0.90186 1.22856 0.99371 0.99304 0.95761 1.21141 0.89196 0.94802 0.89597 1.44494 1.17541 1.37564 1.33652 1.19100 0.93265 1.14570 1.08691 0.90427 1.24806 0.98830 0.98402 0.98480 1.69974 1.35121 1.23079 1.28762 0.86050 0.83263 0.77397 0.79087 1.20512 1.21764 1.21749 1.21587 0.87139 0.92681 0.97065 0.92994 0.92223 0.92696 0.85979 0.92189 0.93011 0.92637 0.84001 0.81472 0.76658 0.91341 0.91010 0.91942 0.92145 0.93547 0.93872 0.93802 0.96244 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.99 37.16 0.33 -0.87 16 2 C -0.07 -0.74 3.08 -91.77 -0.28 -1.02 16 3 C -0.14 -1.28 9.09 37.16 0.34 -0.94 16 4 C -0.01 -0.13 4.72 -105.48 -0.50 -0.63 16 5 C -0.14 -1.30 9.18 -41.41 -0.38 -1.68 16 6 C -0.23 -1.90 10.92 29.18 0.32 -1.58 16 7 S 0.20 1.89 22.18 -107.50 -2.38 -0.49 16 8 C -0.27 -3.28 6.45 -36.79 -0.24 -3.51 16 9 C 0.59 8.42 7.77 -12.90 -0.10 8.32 16 10 O -0.53 -8.79 14.00 5.19 0.07 -8.71 16 11 N -0.72 -9.67 5.44 -61.65 -0.34 -10.00 16 12 C 0.13 1.93 5.12 -4.04 -0.02 1.91 16 13 C -0.12 -1.97 3.07 -88.47 -0.27 -2.24 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 15 C -0.13 -2.42 6.42 -24.90 -0.16 -2.58 16 16 C 0.18 4.26 5.37 -3.07 -0.02 4.24 16 17 N -0.61 -15.35 3.40 -170.04 -0.58 -15.92 16 18 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.06 10.31 55.49 0.57 -26.48 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 C 0.14 2.84 6.56 -2.50 -0.02 2.82 16 27 H 0.05 0.38 7.50 -51.93 -0.39 -0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.12 1.64 4.95 -51.93 -0.26 1.38 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.41 8.00 -51.93 -0.42 -0.01 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.14 1.00 7.67 -52.49 -0.40 0.60 16 35 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.40 4.84 7.57 -40.82 -0.31 4.54 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.10 8.04 -51.93 -0.42 0.69 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 41 H 0.05 1.23 7.38 -51.92 -0.38 0.85 16 42 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -31.61 372.63 -10.45 -42.06 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.15 Total: 1.53 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.24 Total: -4.60 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.34 Total: -52.41 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.61 -10.45 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029002598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.028 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds