Wall clock time and date at job start Tue Mar 31 2020 13:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46983 * 2 1 4 4 C 1.50695 * 109.46966 * 119.99454 * 2 1 3 5 5 C 1.37472 * 123.35597 * 305.31000 * 4 2 1 6 6 C 1.33817 * 115.10434 * 179.97438 * 5 4 2 7 7 S 1.70613 * 110.95487 * 0.02562 * 6 5 4 8 8 C 1.36654 * 123.35222 * 125.27098 * 4 2 1 9 9 C 1.46587 * 125.45353 * 359.77240 * 8 4 2 10 10 O 1.21695 * 120.00006 * 354.35695 * 9 8 4 11 11 N 1.34772 * 119.99443 * 174.35068 * 9 8 4 12 12 C 1.46501 * 119.99681 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47267 * 180.02562 * 12 11 9 14 14 H 1.08999 * 110.88799 * 54.29540 * 13 12 11 15 15 C 1.55160 * 111.00623 * 178.18074 * 13 12 11 16 16 C 1.54323 * 102.94226 * 153.57364 * 15 13 12 17 17 N 1.47015 * 107.27541 * 337.81082 * 16 15 13 18 18 C 1.36938 * 125.65326 * 178.97786 * 17 16 15 19 19 H 1.07995 * 120.00295 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99314 * 359.96995 * 18 17 16 21 21 N 1.31612 * 120.00623 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46861 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47103 * 119.99772 * 22 20 18 25 25 H 1.48499 * 109.47217 * 240.00070 * 22 20 18 26 26 C 1.47469 * 108.71926 * 358.97061 * 17 16 15 27 27 H 1.08994 * 109.47385 * 300.00317 * 1 2 3 28 28 H 1.09006 * 109.47013 * 60.00376 * 1 2 3 29 29 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47385 * 239.99683 * 2 1 3 31 31 H 1.09006 * 109.46940 * 299.99669 * 3 2 1 32 32 H 1.08994 * 109.47319 * 59.99643 * 3 2 1 33 33 H 1.09004 * 109.46956 * 179.97438 * 3 2 1 34 34 H 1.08000 * 122.44622 * 359.94956 * 5 4 2 35 35 H 1.07997 * 124.52014 * 180.02562 * 6 5 4 36 36 H 0.96995 * 120.00886 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47321 * 300.00169 * 12 11 9 38 38 H 1.09003 * 109.47257 * 60.00026 * 12 11 9 39 39 H 1.09003 * 110.71811 * 271.93897 * 15 13 12 40 40 H 1.09002 * 110.71967 * 35.02926 * 15 13 12 41 41 H 1.09012 * 109.88005 * 97.22760 * 16 15 13 42 42 H 1.08997 * 109.88169 * 218.23049 * 16 15 13 43 43 H 0.97009 * 120.00179 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.35067 * 265.25304 * 26 17 16 45 45 H 1.09004 * 110.40534 * 142.92244 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6585 -0.3656 2.5077 6 6 2.2041 -1.1074 3.4787 7 16 3.2363 -2.3001 2.8284 8 6 2.9041 -1.7617 1.1878 9 6 3.4679 -2.3498 -0.0308 10 8 3.0880 -1.9689 -1.1224 11 7 4.4072 -3.3123 0.0578 12 6 4.9711 -3.8997 -1.1601 13 6 6.0071 -4.9602 -0.7824 14 1 5.5777 -5.6996 -0.1064 15 6 6.5953 -5.6387 -2.0478 16 6 7.9900 -6.1007 -1.5756 17 7 8.3546 -5.2735 -0.4162 18 6 9.5112 -5.3811 0.3089 19 1 9.6863 -4.7229 1.1471 20 6 10.4585 -6.3362 -0.0333 21 7 10.2449 -7.1387 -1.0544 22 14 12.0360 -6.4835 0.9563 23 1 12.0330 -5.4743 2.0457 24 1 12.1268 -7.8446 1.5433 25 1 13.2020 -6.2492 0.0670 26 6 7.2687 -4.3083 -0.1632 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 0.9747 0.4449 2.7126 35 1 2.0162 -0.9694 4.5332 36 1 4.7099 -3.6161 0.9278 37 1 4.1745 -4.3620 -1.7431 38 1 5.4488 -3.1193 -1.7524 39 1 5.9866 -6.4925 -2.3457 40 1 6.6794 -4.9228 -2.8654 41 1 7.9540 -7.1508 -1.2852 42 1 8.7169 -5.9624 -2.3760 43 1 10.9071 -7.8059 -1.2937 44 1 7.4840 -3.3585 -0.6528 45 1 7.1327 -4.1615 0.9083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029002598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:31 Heat of formation + Delta-G solvation = -11.568567 kcal Electronic energy + Delta-G solvation = -24651.992030 eV Core-core repulsion = 21181.441568 eV Total energy + Delta-G solvation = -3470.550462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12209 -39.64861 -38.89827 -36.08573 -34.97417 -34.32777 -31.89647 -30.83580 -29.67192 -27.96987 -27.37988 -26.02300 -24.79087 -22.75456 -22.36514 -21.78005 -21.43347 -19.85282 -18.85718 -18.55338 -17.40221 -16.97998 -16.75455 -16.57579 -16.19792 -15.84282 -15.42992 -15.10799 -14.84067 -14.56401 -14.39634 -14.35317 -13.98259 -13.83440 -13.51491 -13.45978 -13.31394 -13.05651 -12.92254 -12.76652 -12.66984 -12.36881 -12.09494 -12.02742 -11.97761 -11.87887 -11.75542 -11.60165 -11.54852 -11.47337 -10.71831 -10.64390 -10.25197 -9.72666 -9.38674 -8.90221 -7.85202 -5.20834 -0.45827 0.53147 0.96572 1.41884 1.45979 1.46909 1.57244 2.07883 2.17064 2.49291 3.33152 3.57808 3.71741 3.84359 3.90277 3.99309 4.01737 4.06131 4.29207 4.33773 4.42222 4.46171 4.61137 4.67255 4.73402 4.77476 4.81385 4.82296 4.89596 4.99143 5.02934 5.06660 5.07174 5.16017 5.23240 5.31213 5.39990 5.40868 5.43074 5.45741 5.67589 5.71053 5.78050 6.19964 6.40850 7.09695 7.10455 7.77714 8.42116 9.25522 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002681 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.931371 B =10442.095422 C =11232.121773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.011 4.011 5 C -0.155 4.155 6 C -0.213 4.213 7 S 0.213 5.787 8 C -0.309 4.309 9 C 0.588 3.412 10 O -0.561 6.561 11 N -0.717 5.717 12 C 0.146 3.854 13 C -0.097 4.097 14 H 0.089 0.911 15 C -0.121 4.121 16 C 0.183 3.817 17 N -0.629 5.629 18 C -0.241 4.241 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.291 1.291 25 H -0.294 1.294 26 C 0.138 3.862 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.166 0.834 35 H 0.199 0.801 36 H 0.406 0.594 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.004 0.996 43 H 0.246 0.754 44 H 0.018 0.982 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.756 13.994 8.382 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.027 4.027 5 C -0.185 4.185 6 C -0.351 4.351 7 S 0.482 5.518 8 C -0.429 4.429 9 C 0.376 3.624 10 O -0.443 6.443 11 N -0.367 5.367 12 C 0.022 3.978 13 C -0.117 4.117 14 H 0.108 0.892 15 C -0.160 4.160 16 C 0.058 3.942 17 N -0.355 5.355 18 C -0.370 4.370 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.218 1.218 25 H -0.221 1.221 26 C 0.013 3.987 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.183 0.817 35 H 0.217 0.783 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.032 0.968 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.894 12.957 8.299 25.948 hybrid contribution 0.637 0.481 -0.003 0.798 sum -20.257 13.438 8.295 25.686 Atomic orbital electron populations 1.21743 0.92850 1.01558 1.02861 1.20393 0.96992 0.96407 0.95589 1.21736 1.00193 0.94311 1.02831 1.19743 0.93126 0.92895 0.96974 1.20037 1.04643 1.03803 0.90063 1.25680 1.02662 1.00753 1.05994 1.83109 1.42598 1.31784 0.94344 1.24379 1.12535 1.08221 0.97754 1.17232 0.78646 0.78761 0.87721 1.90672 1.62007 1.62481 1.29141 1.45894 1.40799 1.39345 1.10683 1.21223 0.95410 0.94938 0.86226 1.22434 0.93972 0.96996 0.98285 0.89231 1.22717 0.96015 1.00628 0.96646 1.20913 0.91704 0.93294 0.88275 1.44821 1.18236 1.38654 1.33784 1.19507 0.94324 1.14299 1.08858 0.89889 1.25667 1.02147 0.98518 0.99779 1.70197 1.35890 1.23685 1.30364 0.85009 0.79029 0.77416 0.77879 1.18846 1.21822 1.22114 1.21756 0.87195 0.91733 0.98059 0.91053 0.91522 0.93706 0.89087 0.91433 0.91136 0.94296 0.81654 0.78349 0.75870 0.90266 0.91883 0.89473 0.90956 0.96842 0.97744 0.94441 0.96422 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.99 71.98 0.65 -1.46 16 2 C -0.07 -1.52 3.08 -11.54 -0.04 -1.56 16 3 C -0.13 -2.31 9.09 71.98 0.65 -1.65 16 4 C -0.01 -0.23 4.72 -20.42 -0.10 -0.33 16 5 C -0.15 -2.32 9.18 21.08 0.19 -2.13 16 6 C -0.21 -2.78 10.92 66.81 0.73 -2.05 16 7 S 0.21 3.59 22.18 -56.49 -1.25 2.34 16 8 C -0.31 -7.23 6.45 24.08 0.16 -7.07 16 9 C 0.59 16.65 7.77 86.42 0.67 17.33 16 10 O -0.56 -18.95 14.00 -4.33 -0.06 -19.01 16 11 N -0.72 -18.63 5.44 -467.17 -2.54 -21.18 16 12 C 0.15 4.04 5.12 86.38 0.44 4.48 16 13 C -0.10 -3.09 3.07 -9.40 -0.03 -3.12 16 14 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 15 C -0.12 -4.30 6.42 31.78 0.20 -4.09 16 16 C 0.18 9.06 5.37 86.73 0.47 9.53 16 17 N -0.63 -32.27 3.40 -691.88 -2.35 -34.62 16 18 C -0.24 -13.53 10.28 84.03 0.86 -12.66 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 21 N -0.95 -57.79 10.31 21.65 0.22 -57.57 16 22 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 26 C 0.14 5.44 6.56 86.85 0.57 6.01 16 27 H 0.07 0.85 7.50 -2.39 -0.02 0.83 16 28 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 2.51 4.95 -2.39 -0.01 2.50 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.07 0.94 8.00 -2.39 -0.02 0.92 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.17 1.65 7.67 -2.91 -0.02 1.63 16 35 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.41 9.35 7.57 -92.71 -0.70 8.65 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 39 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 41 H 0.01 0.74 7.38 -2.38 -0.02 0.72 16 42 H 0.00 0.24 7.50 -2.39 -0.02 0.22 16 43 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 44 H 0.02 0.72 7.96 -2.38 -0.02 0.70 16 45 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -71.00 372.63 2.23 -68.77 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.28 Total: 15.59 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.90 Total: -2.23 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.67 Total: -113.36 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.06 Total: -19.01 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.25 Total: 2.34 kcal Total: -71.00 2.23 -68.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029002598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.203 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds