Wall clock time and date at job start Tue Mar 31 2020 13:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.50708 * 109.46980 * 120.00083 * 2 1 3 5 5 C 1.37470 * 123.34766 * 305.21932 * 4 2 1 6 6 C 1.33820 * 115.09645 * 180.29679 * 5 4 2 7 7 S 1.70614 * 110.95788 * 359.72439 * 6 5 4 8 8 C 1.36646 * 123.35055 * 125.00049 * 4 2 1 9 9 C 1.46580 * 125.45823 * 359.97438 * 8 4 2 10 10 O 1.21700 * 120.00357 * 354.33802 * 9 8 4 11 11 N 1.34784 * 119.99873 * 174.33704 * 9 8 4 12 12 C 1.46500 * 119.99916 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46717 * 179.72668 * 12 11 9 14 14 H 1.08994 * 110.64486 * 308.14267 * 13 12 11 15 15 C 1.55160 * 110.71827 * 184.99910 * 13 12 11 16 16 C 1.54906 * 101.58305 * 206.13829 * 15 13 12 17 17 N 1.47423 * 104.83692 * 37.00770 * 16 15 13 18 18 C 1.36930 * 125.65314 * 155.83586 * 17 16 15 19 19 H 1.07998 * 120.00486 * 180.02562 * 18 17 16 20 20 C 1.38821 * 119.99861 * 0.02756 * 18 17 16 21 21 N 1.31626 * 119.99821 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00197 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47215 * 120.00069 * 22 20 18 25 25 H 1.48497 * 109.47235 * 240.00455 * 22 20 18 26 26 C 1.47027 * 108.69938 * 335.87619 * 17 16 15 27 27 H 1.09008 * 109.47187 * 300.00407 * 1 2 3 28 28 H 1.09002 * 109.46916 * 59.99883 * 1 2 3 29 29 H 1.08992 * 109.47627 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47167 * 239.99552 * 2 1 3 31 31 H 1.08998 * 109.47184 * 60.00201 * 3 2 1 32 32 H 1.09005 * 109.46886 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47203 * 299.99706 * 3 2 1 34 34 H 1.07999 * 122.45477 * 0.04182 * 5 4 2 35 35 H 1.08006 * 124.52227 * 179.74721 * 6 5 4 36 36 H 0.97004 * 119.99510 * 359.72789 * 11 9 8 37 37 H 1.08999 * 109.46880 * 299.72870 * 12 11 9 38 38 H 1.09000 * 109.46987 * 59.72512 * 12 11 9 39 39 H 1.09002 * 111.00367 * 324.21074 * 15 13 12 40 40 H 1.09003 * 111.00205 * 88.02104 * 15 13 12 41 41 H 1.08998 * 110.36796 * 155.84856 * 16 15 13 42 42 H 1.09009 * 110.36496 * 278.16748 * 16 15 13 43 43 H 0.96991 * 119.99845 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.87995 * 241.63807 * 26 17 16 45 45 H 1.08998 * 109.88221 * 120.47244 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6598 -0.3646 2.5078 6 6 2.2104 -1.1024 3.4790 7 16 3.2395 -2.2977 2.8285 8 6 2.8999 -1.7652 1.1874 9 6 3.4620 -2.3547 -0.0313 10 8 3.0839 -1.9717 -1.1228 11 7 4.3976 -3.3208 0.0570 12 6 4.9598 -3.9095 -1.1611 13 6 5.9971 -4.9689 -0.7836 14 1 6.7264 -4.5605 -0.0840 15 6 6.7017 -5.5230 -2.0500 16 6 7.1295 -6.9342 -1.5756 17 7 6.0238 -7.3949 -0.7163 18 6 5.7117 -8.7011 -0.4488 19 1 4.8780 -8.9360 0.1962 20 6 6.4671 -9.7234 -1.0067 21 7 7.4836 -9.4372 -1.7924 22 14 6.0420 -11.5053 -0.6413 23 1 4.8651 -11.5580 0.2630 24 1 5.7227 -12.2082 -1.9099 25 1 7.1996 -12.1662 0.0131 26 6 5.3109 -6.2195 -0.1948 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 0.9761 0.4459 2.7127 35 1 2.0275 -0.9604 4.5340 36 1 4.7019 -3.6232 0.9270 37 1 4.1624 -4.3726 -1.7423 38 1 5.4364 -3.1297 -1.7550 39 1 6.0069 -5.5864 -2.8875 40 1 7.5700 -4.9177 -2.3104 41 1 7.2497 -7.6012 -2.4293 42 1 8.0560 -6.8776 -1.0040 43 1 8.0112 -10.1515 -2.1826 44 1 5.3748 -6.1998 0.8932 45 1 4.2669 -6.2508 -0.5064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029002599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:36 Heat of formation + Delta-G solvation = 8.394238 kcal Electronic energy + Delta-G solvation = -24644.404725 eV Core-core repulsion = 21174.719915 eV Total energy + Delta-G solvation = -3469.684810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11637 -38.56299 -37.50530 -34.74635 -34.19297 -32.56053 -30.44913 -29.49168 -28.16442 -27.27722 -25.80004 -24.78774 -23.42446 -21.95767 -21.29346 -20.20861 -19.87395 -18.74938 -17.82109 -16.85427 -16.43088 -15.80199 -15.65813 -15.19533 -14.73270 -14.53374 -14.33430 -13.78065 -13.74362 -13.69931 -13.51328 -12.89468 -12.78823 -12.60679 -12.51511 -12.26390 -11.79615 -11.73011 -11.66619 -11.51532 -11.28649 -11.14915 -10.95727 -10.85645 -10.82283 -10.39328 -10.11013 -10.00993 -9.86071 -9.65809 -9.49075 -9.18787 -8.87635 -8.67305 -8.65933 -6.84069 -5.66215 -3.07790 0.32785 1.27857 1.67361 2.18183 3.14119 3.15575 3.39299 3.44811 3.47312 4.47976 4.56042 4.68649 4.78728 4.92242 5.07785 5.11694 5.16054 5.23710 5.38480 5.42962 5.46466 5.49683 5.51909 5.66667 5.69049 5.77724 5.86717 5.89547 5.93804 6.03945 6.09021 6.10805 6.12679 6.32988 6.34530 6.53305 6.56298 6.57714 6.71196 6.89496 7.45445 7.50670 7.62601 7.84943 8.15160 8.35740 9.21577 9.82418 10.47174 11.37902 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.002620 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.315971 B =10684.556606 C =11255.743487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.012 4.012 5 C -0.144 4.144 6 C -0.231 4.231 7 S 0.199 5.801 8 C -0.269 4.269 9 C 0.590 3.410 10 O -0.529 6.529 11 N -0.720 5.720 12 C 0.133 3.867 13 C -0.116 4.116 14 H 0.076 0.924 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.604 5.604 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.141 3.859 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.123 0.877 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.398 0.602 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.251 0.749 44 H 0.018 0.982 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 21.096 8.274 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.027 4.027 5 C -0.176 4.176 6 C -0.368 4.368 7 S 0.468 5.532 8 C -0.390 4.390 9 C 0.377 3.623 10 O -0.408 6.408 11 N -0.370 5.370 12 C 0.010 3.990 13 C -0.135 4.135 14 H 0.095 0.905 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.015 3.985 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.185 0.815 36 H 0.233 0.767 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.874 19.950 8.120 23.296 hybrid contribution -0.950 0.100 0.449 1.056 sum -9.824 20.050 8.569 23.916 Atomic orbital electron populations 1.21783 0.94363 1.01919 1.01530 1.20427 0.95755 0.95953 0.96777 1.21760 1.01161 0.94989 1.01530 1.19476 0.93874 0.93455 0.95917 1.19859 1.03802 1.02872 0.91065 1.25253 1.04697 1.02331 1.04554 1.83172 1.42542 1.31413 0.96113 1.24474 1.10854 1.06415 0.97212 1.16919 0.79014 0.79181 0.87237 1.90686 1.60708 1.61683 1.27727 1.46001 1.41310 1.38979 1.10725 1.21522 0.96340 0.95363 0.85748 1.22462 0.96683 0.94732 0.99632 0.90538 1.23008 0.99031 0.99685 0.95664 1.21936 0.88932 0.89990 0.96447 1.44512 1.33003 1.00490 1.55047 1.19125 1.11086 0.80722 1.24071 0.90480 1.24795 0.97805 0.98136 1.00019 1.69805 1.20792 1.30227 1.36279 0.85998 0.77446 0.84618 0.77441 1.20534 1.21721 1.21760 1.21341 0.94922 0.86603 0.95651 0.92993 0.92213 0.92610 0.85967 0.93017 0.92739 0.92189 0.83993 0.81472 0.76747 0.90882 0.91302 0.91774 0.92073 0.87502 0.96991 0.93773 0.96410 0.95744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.99 37.15 0.33 -0.92 16 2 C -0.07 -0.74 3.08 -91.77 -0.28 -1.03 16 3 C -0.14 -1.23 9.09 37.16 0.34 -0.89 16 4 C -0.01 -0.13 4.72 -105.47 -0.50 -0.63 16 5 C -0.14 -1.30 9.18 -41.41 -0.38 -1.68 16 6 C -0.23 -1.89 10.92 29.18 0.32 -1.57 16 7 S 0.20 1.88 22.17 -107.50 -2.38 -0.51 16 8 C -0.27 -3.28 6.45 -36.79 -0.24 -3.52 16 9 C 0.59 8.51 7.77 -12.89 -0.10 8.41 16 10 O -0.53 -8.91 13.99 5.19 0.07 -8.84 16 11 N -0.72 -9.77 5.46 -61.65 -0.34 -10.10 16 12 C 0.13 1.98 5.02 -4.04 -0.02 1.96 16 13 C -0.12 -1.92 2.96 -88.78 -0.26 -2.18 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.13 -2.48 6.53 -24.58 -0.16 -2.64 16 16 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 17 N -0.60 -15.42 3.39 -170.07 -0.58 -15.99 16 18 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.34 5.49 -17.42 -0.10 -0.44 16 21 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.14 2.87 6.75 -3.06 -0.02 2.85 16 27 H 0.05 0.39 7.50 -51.92 -0.39 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.12 1.66 4.95 -51.93 -0.26 1.40 16 31 H 0.05 0.40 8.00 -51.93 -0.42 -0.02 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.14 1.00 7.67 -52.49 -0.40 0.60 16 35 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.40 4.80 7.60 -40.82 -0.31 4.49 16 37 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 42 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -31.44 371.82 -10.40 -41.84 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.08 Total: 2.23 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.24 Total: -5.00 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.35 Total: -52.38 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.44 -10.40 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029002599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.235 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds