Wall clock time and date at job start Tue Mar 31 2020 13:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.50708 * 109.46980 * 120.00083 * 2 1 3 5 5 C 1.37470 * 123.34766 * 305.21932 * 4 2 1 6 6 C 1.33820 * 115.09645 * 180.29679 * 5 4 2 7 7 S 1.70614 * 110.95788 * 359.72439 * 6 5 4 8 8 C 1.36646 * 123.35055 * 125.00049 * 4 2 1 9 9 C 1.46580 * 125.45823 * 359.97438 * 8 4 2 10 10 O 1.21700 * 120.00357 * 354.33802 * 9 8 4 11 11 N 1.34784 * 119.99873 * 174.33704 * 9 8 4 12 12 C 1.46500 * 119.99916 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46717 * 179.72668 * 12 11 9 14 14 H 1.08994 * 110.64486 * 308.14267 * 13 12 11 15 15 C 1.55160 * 110.71827 * 184.99910 * 13 12 11 16 16 C 1.54906 * 101.58305 * 206.13829 * 15 13 12 17 17 N 1.47423 * 104.83692 * 37.00770 * 16 15 13 18 18 C 1.36930 * 125.65314 * 155.83586 * 17 16 15 19 19 H 1.07998 * 120.00486 * 180.02562 * 18 17 16 20 20 C 1.38821 * 119.99861 * 0.02756 * 18 17 16 21 21 N 1.31626 * 119.99821 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00197 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47215 * 120.00069 * 22 20 18 25 25 H 1.48497 * 109.47235 * 240.00455 * 22 20 18 26 26 C 1.47027 * 108.69938 * 335.87619 * 17 16 15 27 27 H 1.09008 * 109.47187 * 300.00407 * 1 2 3 28 28 H 1.09002 * 109.46916 * 59.99883 * 1 2 3 29 29 H 1.08992 * 109.47627 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47167 * 239.99552 * 2 1 3 31 31 H 1.08998 * 109.47184 * 60.00201 * 3 2 1 32 32 H 1.09005 * 109.46886 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47203 * 299.99706 * 3 2 1 34 34 H 1.07999 * 122.45477 * 0.04182 * 5 4 2 35 35 H 1.08006 * 124.52227 * 179.74721 * 6 5 4 36 36 H 0.97004 * 119.99510 * 359.72789 * 11 9 8 37 37 H 1.08999 * 109.46880 * 299.72870 * 12 11 9 38 38 H 1.09000 * 109.46987 * 59.72512 * 12 11 9 39 39 H 1.09002 * 111.00367 * 324.21074 * 15 13 12 40 40 H 1.09003 * 111.00205 * 88.02104 * 15 13 12 41 41 H 1.08998 * 110.36796 * 155.84856 * 16 15 13 42 42 H 1.09009 * 110.36496 * 278.16748 * 16 15 13 43 43 H 0.96991 * 119.99845 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.87995 * 241.63807 * 26 17 16 45 45 H 1.08998 * 109.88221 * 120.47244 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6598 -0.3646 2.5078 6 6 2.2104 -1.1024 3.4790 7 16 3.2395 -2.2977 2.8285 8 6 2.8999 -1.7652 1.1874 9 6 3.4620 -2.3547 -0.0313 10 8 3.0839 -1.9717 -1.1228 11 7 4.3976 -3.3208 0.0570 12 6 4.9598 -3.9095 -1.1611 13 6 5.9971 -4.9689 -0.7836 14 1 6.7264 -4.5605 -0.0840 15 6 6.7017 -5.5230 -2.0500 16 6 7.1295 -6.9342 -1.5756 17 7 6.0238 -7.3949 -0.7163 18 6 5.7117 -8.7011 -0.4488 19 1 4.8780 -8.9360 0.1962 20 6 6.4671 -9.7234 -1.0067 21 7 7.4836 -9.4372 -1.7924 22 14 6.0420 -11.5053 -0.6413 23 1 4.8651 -11.5580 0.2630 24 1 5.7227 -12.2082 -1.9099 25 1 7.1996 -12.1662 0.0131 26 6 5.3109 -6.2195 -0.1948 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 0.9761 0.4459 2.7127 35 1 2.0275 -0.9604 4.5340 36 1 4.7019 -3.6232 0.9270 37 1 4.1624 -4.3726 -1.7423 38 1 5.4364 -3.1297 -1.7550 39 1 6.0069 -5.5864 -2.8875 40 1 7.5700 -4.9177 -2.3104 41 1 7.2497 -7.6012 -2.4293 42 1 8.0560 -6.8776 -1.0040 43 1 8.0112 -10.1515 -2.1826 44 1 5.3748 -6.1998 0.8932 45 1 4.2669 -6.2508 -0.5064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029002599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:35 Heat of formation + Delta-G solvation = -9.945629 kcal Electronic energy + Delta-G solvation = -24645.200001 eV Core-core repulsion = 21174.719915 eV Total energy + Delta-G solvation = -3470.480086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13586 -39.66270 -38.90275 -36.10647 -34.98155 -34.33614 -31.90133 -30.83940 -29.65277 -27.97512 -27.39746 -26.02526 -24.78187 -22.76547 -22.40471 -21.84028 -21.33953 -19.83590 -18.88820 -18.57748 -17.43200 -16.96508 -16.80847 -16.63365 -16.18847 -15.84664 -15.49610 -15.11911 -14.70052 -14.59796 -14.40460 -14.29416 -14.15594 -13.56896 -13.54837 -13.37866 -13.34027 -13.16939 -12.92970 -12.81524 -12.71309 -12.37118 -12.08924 -12.03361 -11.98231 -11.84337 -11.78884 -11.61910 -11.58177 -11.36533 -10.75791 -10.64868 -10.27010 -9.73588 -9.39282 -8.88734 -7.78128 -5.22265 -0.46626 0.52245 0.95922 1.41169 1.46256 1.47177 1.57464 2.08338 2.14503 2.49052 3.31447 3.59238 3.73265 3.82383 3.89189 3.94499 4.02484 4.07382 4.28699 4.33231 4.42487 4.45709 4.63423 4.67118 4.72132 4.76208 4.81292 4.81991 4.89176 4.98673 5.02099 5.06136 5.11706 5.15689 5.22718 5.30567 5.38757 5.39435 5.40880 5.47364 5.65770 5.70468 5.82362 6.31477 6.39975 7.08855 7.10986 7.78361 8.41859 9.24041 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.002620 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.315971 B =10684.556606 C =11255.743487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.011 4.011 5 C -0.155 4.155 6 C -0.212 4.212 7 S 0.213 5.787 8 C -0.310 4.310 9 C 0.587 3.413 10 O -0.562 6.562 11 N -0.716 5.716 12 C 0.145 3.855 13 C -0.095 4.095 14 H 0.096 0.904 15 C -0.121 4.121 16 C 0.152 3.848 17 N -0.628 5.628 18 C -0.238 4.238 19 H 0.079 0.921 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.137 3.863 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.166 0.834 35 H 0.200 0.800 36 H 0.406 0.594 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.071 0.929 42 H -0.009 1.009 43 H 0.247 0.753 44 H 0.027 0.973 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 22.863 10.404 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.094 4.094 3 C -0.189 4.189 4 C -0.027 4.027 5 C -0.185 4.185 6 C -0.350 4.350 7 S 0.482 5.518 8 C -0.429 4.429 9 C 0.376 3.624 10 O -0.444 6.444 11 N -0.367 5.367 12 C 0.022 3.978 13 C -0.115 4.115 14 H 0.114 0.886 15 C -0.160 4.160 16 C 0.027 3.973 17 N -0.354 5.354 18 C -0.367 4.367 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.808 3.192 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.012 3.988 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.184 0.816 35 H 0.217 0.783 36 H 0.242 0.758 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.009 0.991 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.047 21.736 10.279 26.058 hybrid contribution -0.626 -0.412 -0.151 0.765 sum -10.673 21.324 10.128 25.907 Atomic orbital electron populations 1.21752 0.93069 1.01409 1.02904 1.20396 0.96846 0.96622 0.95575 1.21721 1.00319 0.94031 1.02830 1.19745 0.93100 0.92856 0.96990 1.20037 1.04581 1.03900 0.90029 1.25688 1.02720 1.00596 1.06008 1.83094 1.42758 1.31719 0.94213 1.24364 1.12816 1.08010 0.97741 1.17265 0.78603 0.78817 0.87756 1.90676 1.61756 1.62735 1.29228 1.45896 1.41296 1.38872 1.10623 1.21264 0.95340 0.94968 0.86244 1.22300 0.96941 0.93486 0.98725 0.88557 1.22849 1.00303 0.96631 0.96249 1.21736 0.88254 0.92548 0.94747 1.44831 1.33732 1.01139 1.55714 1.19480 1.11060 0.82315 1.23863 0.90310 1.25636 0.98032 1.02104 1.00280 1.70058 1.21665 1.30951 1.37190 0.84987 0.77412 0.79634 0.77164 1.19168 1.21864 1.21793 1.21502 0.94516 0.86584 0.96164 0.90943 0.91512 0.94027 0.89192 0.91105 0.93996 0.91480 0.81616 0.78286 0.75810 0.92508 0.90210 0.91816 0.89079 0.91054 0.99069 0.94318 0.95483 0.96242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.99 71.98 0.65 -1.60 16 2 C -0.07 -1.55 3.08 -11.54 -0.04 -1.58 16 3 C -0.13 -2.18 9.09 71.98 0.65 -1.53 16 4 C -0.01 -0.22 4.72 -20.42 -0.10 -0.32 16 5 C -0.15 -2.31 9.18 21.08 0.19 -2.12 16 6 C -0.21 -2.74 10.92 66.82 0.73 -2.01 16 7 S 0.21 3.59 22.17 -56.49 -1.25 2.33 16 8 C -0.31 -7.30 6.45 24.08 0.16 -7.15 16 9 C 0.59 16.96 7.77 86.42 0.67 17.63 16 10 O -0.56 -19.47 13.99 -4.35 -0.06 -19.54 16 11 N -0.72 -18.94 5.46 -467.17 -2.55 -21.49 16 12 C 0.15 4.19 5.02 86.38 0.43 4.62 16 13 C -0.10 -3.05 2.96 -9.60 -0.03 -3.07 16 14 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 15 C -0.12 -4.37 6.53 31.99 0.21 -4.16 16 16 C 0.15 7.46 5.89 86.85 0.51 7.97 16 17 N -0.63 -32.49 3.39 -691.98 -2.35 -34.84 16 18 C -0.24 -13.49 10.27 84.04 0.86 -12.62 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 21 N -0.95 -56.85 10.09 21.66 0.22 -56.63 16 22 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 C 0.14 5.55 6.75 86.73 0.59 6.14 16 27 H 0.07 0.90 7.50 -2.38 -0.02 0.88 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 2.52 4.95 -2.39 -0.01 2.51 16 31 H 0.07 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.17 1.64 7.67 -2.91 -0.02 1.62 16 35 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.41 9.31 7.60 -92.71 -0.70 8.60 16 37 H 0.06 1.84 7.93 -2.39 -0.02 1.82 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 2.30 8.05 -2.39 -0.02 2.29 16 40 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.07 4.03 5.87 -2.39 -0.01 4.01 16 42 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 43 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.02 0.81 7.68 -2.39 -0.02 0.79 16 Total: -1.00 -70.47 371.82 2.27 -68.20 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.28 Total: 17.20 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 5.96 Total: -3.24 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.68 Total: -112.97 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.06 Total: -19.54 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.25 Total: 2.33 kcal Total: -70.47 2.27 -68.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029002599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.254 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds