Wall clock time and date at job start Tue Mar 31 2020 13:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.50705 * 109.46985 * 120.00191 * 2 1 3 5 5 C 1.33809 * 124.52614 * 120.00022 * 4 2 1 6 6 C 1.37474 * 115.10600 * 179.97438 * 5 4 2 7 7 C 1.36649 * 113.29250 * 0.23644 * 6 5 4 8 8 C 1.46585 * 125.45561 * 179.76271 * 7 6 5 9 9 O 1.21704 * 119.99827 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99813 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00242 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47353 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.89125 * 51.11857 * 12 11 10 14 14 C 1.55156 * 111.00615 * 174.99823 * 12 11 10 15 15 C 1.54314 * 102.94720 * 153.57589 * 14 12 11 16 16 N 1.47025 * 107.27256 * 337.80498 * 15 14 12 17 17 C 1.36932 * 125.65540 * 178.91952 * 16 15 14 18 18 H 1.08001 * 120.00438 * 180.02562 * 17 16 15 19 19 C 1.38821 * 119.99487 * 0.02598 * 17 16 15 20 20 N 1.31616 * 119.99890 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99624 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47639 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47322 * 120.00317 * 21 19 17 24 24 H 1.48506 * 109.46897 * 240.00040 * 21 19 17 25 25 C 1.47427 * 108.69915 * 358.94066 * 16 15 14 26 26 S 1.70622 * 124.51935 * 299.97003 * 4 2 1 27 27 H 1.09003 * 109.46813 * 299.99854 * 1 2 3 28 28 H 1.08993 * 109.47208 * 59.99906 * 1 2 3 29 29 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47165 * 239.99495 * 2 1 3 31 31 H 1.09001 * 109.47149 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46902 * 299.99838 * 3 2 1 33 33 H 1.08994 * 109.47204 * 60.00093 * 3 2 1 34 34 H 1.08005 * 122.44908 * 359.95518 * 5 4 2 35 35 H 1.08002 * 123.35114 * 179.97438 * 6 5 4 36 36 H 0.97002 * 120.00332 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.46524 * 300.00106 * 11 10 8 38 38 H 1.08996 * 109.47093 * 59.99598 * 11 10 8 39 39 H 1.09003 * 110.71777 * 271.94403 * 14 12 11 40 40 H 1.09003 * 110.71863 * 35.03072 * 14 12 11 41 41 H 1.08997 * 109.88991 * 97.22228 * 15 14 12 42 42 H 1.09001 * 109.88722 * 218.39386 * 15 14 12 43 43 H 0.97004 * 119.99776 * 180.02562 * 20 19 17 44 44 H 1.08991 * 110.37222 * 265.28956 * 25 16 15 45 45 H 1.09002 * 110.36399 * 142.96398 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8048 -1.8029 1.2132 6 6 3.1512 -2.2920 2.4505 7 6 2.6312 -1.5648 3.4839 8 6 2.8268 -1.8511 4.9082 9 8 3.5001 -2.8055 5.2501 10 7 2.2609 -1.0576 5.8389 11 6 2.4568 -1.3434 7.2624 12 6 1.7138 -0.3000 8.0990 13 1 0.6777 -0.2068 7.7734 14 6 1.7930 -0.6402 9.6108 15 6 1.6459 0.7405 10.2841 16 7 2.0342 1.7536 9.2918 17 6 2.0227 3.1087 9.4883 18 1 2.3273 3.7724 8.6925 19 6 1.6194 3.6295 10.7103 20 7 1.2486 2.8206 11.6801 21 14 1.6044 5.4780 10.9785 22 1 2.0641 6.1614 9.7428 23 1 0.2247 5.9197 11.3049 24 1 2.5131 5.8226 12.1014 25 6 2.4374 1.0688 8.0501 26 16 1.6925 -0.2287 2.8316 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1320 -2.2669 0.2944 35 1 3.7691 -3.1665 2.5915 36 1 1.7239 -0.2971 5.5664 37 1 2.0677 -2.3357 7.4906 38 1 3.5206 -1.3074 7.4972 39 1 0.9752 -1.2999 9.9010 40 1 2.7551 -1.0908 9.8547 41 1 0.6108 0.8966 10.5876 42 1 2.3022 0.8015 11.1522 43 1 0.9665 3.1845 12.5339 44 1 3.5178 0.9262 8.0291 45 1 2.1122 1.6389 7.1798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029009776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:25 Heat of formation + Delta-G solvation = 2.229307 kcal Electronic energy + Delta-G solvation = -24217.541350 eV Core-core repulsion = 20747.589208 eV Total energy + Delta-G solvation = -3469.952142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.79658 -38.44195 -37.58210 -35.41398 -34.66476 -32.53647 -30.19635 -29.27075 -28.14744 -27.58713 -25.85145 -24.88332 -23.44670 -21.70644 -21.26314 -20.18763 -20.00701 -19.24141 -17.96393 -16.78687 -16.49993 -15.74165 -15.53306 -15.14818 -14.78226 -14.65578 -14.47943 -14.09455 -13.99346 -13.60299 -13.32548 -13.18645 -12.81457 -12.51089 -12.40117 -12.33260 -12.00806 -11.79743 -11.70984 -11.57398 -11.55119 -11.40653 -10.93569 -10.89934 -10.81739 -10.44508 -10.18017 -10.03975 -9.91432 -9.81833 -9.66336 -9.12656 -8.82447 -8.78192 -8.60816 -6.83631 -5.71771 -3.05230 0.31067 1.22980 1.67455 2.19413 3.14769 3.17784 3.39216 3.44641 3.47204 4.17008 4.46577 4.48787 4.68522 4.74185 4.95160 5.10085 5.12110 5.19692 5.21555 5.25387 5.38299 5.40114 5.41486 5.54291 5.56935 5.66817 5.72407 5.79756 5.82928 5.88422 5.93652 6.04665 6.05130 6.13467 6.34044 6.37571 6.49280 6.53098 6.67428 6.90215 7.45400 7.56003 7.63106 7.82552 8.13665 8.25551 9.21760 9.82110 10.48231 11.40080 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002780 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.827295 B =10069.811321 C =11578.741247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.189 4.189 5 C -0.155 4.155 6 C -0.055 4.055 7 C -0.267 4.267 8 C 0.588 3.412 9 O -0.535 6.535 10 N -0.720 5.720 11 C 0.133 3.867 12 C -0.119 4.119 13 H 0.080 0.920 14 C -0.134 4.134 15 C 0.177 3.823 16 N -0.606 5.606 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.142 3.858 26 S 0.210 5.790 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 -8.383 -23.515 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.208 4.208 4 C -0.308 4.308 5 C -0.185 4.185 6 C -0.088 4.088 7 C -0.388 4.388 8 C 0.374 3.626 9 O -0.414 6.414 10 N -0.371 5.371 11 C 0.010 3.990 12 C -0.139 4.139 13 H 0.098 0.902 14 C -0.173 4.173 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.015 3.985 26 S 0.478 5.522 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.378 -7.707 -22.398 23.727 hybrid contribution 0.591 0.127 -0.606 0.856 sum -0.787 -7.579 -23.004 24.233 Atomic orbital electron populations 1.21953 0.93712 1.02529 1.02553 1.19782 0.96067 0.95764 0.93196 1.21957 1.01741 0.94532 1.02574 1.24324 1.04739 1.01511 1.00269 1.19958 1.02037 0.97655 0.98880 1.20724 0.98149 0.99694 0.90226 1.24674 1.11840 1.04631 0.97624 1.16950 0.79542 0.82577 0.83550 1.90820 1.39866 1.29182 1.81503 1.45970 1.52957 1.30993 1.07132 1.21464 1.01058 0.98740 0.77754 1.22632 0.99592 0.95612 0.96032 0.90173 1.22858 1.00803 1.00275 0.93387 1.21148 0.99933 0.82665 0.91000 1.44489 1.77623 1.02163 1.08986 1.19106 1.38061 0.80623 0.97851 0.90420 1.24810 1.01552 0.97959 0.96209 1.69976 1.50542 1.32372 1.04039 0.86046 0.77239 0.84811 0.77679 1.20511 1.21759 1.21761 1.21589 0.95789 0.90470 0.90633 1.83066 1.47231 1.26046 0.95823 0.92177 0.91677 0.92075 0.89314 0.92019 0.91672 0.92139 0.83997 0.83054 0.76700 0.91334 0.90998 0.91938 0.92133 0.93520 0.93857 0.93807 0.96234 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.08 37.16 0.34 -0.56 16 2 C -0.03 -0.18 3.25 -91.77 -0.30 -0.48 16 3 C -0.15 -0.94 9.08 37.16 0.34 -0.60 16 4 C -0.19 -1.62 4.95 -35.86 -0.18 -1.80 16 5 C -0.15 -1.37 9.95 -41.41 -0.41 -1.78 16 6 C -0.05 -0.60 10.01 -40.43 -0.40 -1.00 16 7 C -0.27 -3.26 6.45 -36.79 -0.24 -3.50 16 8 C 0.59 8.68 7.78 -12.90 -0.10 8.58 16 9 O -0.53 -9.56 16.84 5.19 0.09 -9.47 16 10 N -0.72 -9.90 5.50 -61.65 -0.34 -10.23 16 11 C 0.13 1.97 5.13 -4.04 -0.02 1.95 16 12 C -0.12 -1.98 3.05 -88.47 -0.27 -2.25 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 14 C -0.13 -2.45 6.42 -24.90 -0.16 -2.61 16 15 C 0.18 4.27 5.37 -3.07 -0.02 4.26 16 16 N -0.61 -15.39 3.39 -170.07 -0.58 -15.97 16 17 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -27.08 10.31 55.49 0.57 -26.51 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.14 2.86 6.65 -2.53 -0.02 2.84 16 26 S 0.21 2.03 21.37 -107.50 -2.30 -0.27 16 27 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.40 4.88 7.59 -40.82 -0.31 4.57 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 41 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 42 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -32.34 378.87 -10.89 -43.24 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.34 Total: 0.29 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.69 Total: -3.81 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.34 Total: -52.71 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.30 Total: -0.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.34 -10.89 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029009776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.468 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds