Wall clock time and date at job start Tue Mar 31 2020 13:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.50705 * 109.46985 * 120.00191 * 2 1 3 5 5 C 1.33809 * 124.52614 * 120.00022 * 4 2 1 6 6 C 1.37474 * 115.10600 * 179.97438 * 5 4 2 7 7 C 1.36649 * 113.29250 * 0.23644 * 6 5 4 8 8 C 1.46585 * 125.45561 * 179.76271 * 7 6 5 9 9 O 1.21704 * 119.99827 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99813 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00242 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47353 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.89125 * 51.11857 * 12 11 10 14 14 C 1.55156 * 111.00615 * 174.99823 * 12 11 10 15 15 C 1.54314 * 102.94720 * 153.57589 * 14 12 11 16 16 N 1.47025 * 107.27256 * 337.80498 * 15 14 12 17 17 C 1.36932 * 125.65540 * 178.91952 * 16 15 14 18 18 H 1.08001 * 120.00438 * 180.02562 * 17 16 15 19 19 C 1.38821 * 119.99487 * 0.02598 * 17 16 15 20 20 N 1.31616 * 119.99890 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99624 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47639 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47322 * 120.00317 * 21 19 17 24 24 H 1.48506 * 109.46897 * 240.00040 * 21 19 17 25 25 C 1.47427 * 108.69915 * 358.94066 * 16 15 14 26 26 S 1.70622 * 124.51935 * 299.97003 * 4 2 1 27 27 H 1.09003 * 109.46813 * 299.99854 * 1 2 3 28 28 H 1.08993 * 109.47208 * 59.99906 * 1 2 3 29 29 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47165 * 239.99495 * 2 1 3 31 31 H 1.09001 * 109.47149 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46902 * 299.99838 * 3 2 1 33 33 H 1.08994 * 109.47204 * 60.00093 * 3 2 1 34 34 H 1.08005 * 122.44908 * 359.95518 * 5 4 2 35 35 H 1.08002 * 123.35114 * 179.97438 * 6 5 4 36 36 H 0.97002 * 120.00332 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.46524 * 300.00106 * 11 10 8 38 38 H 1.08996 * 109.47093 * 59.99598 * 11 10 8 39 39 H 1.09003 * 110.71777 * 271.94403 * 14 12 11 40 40 H 1.09003 * 110.71863 * 35.03072 * 14 12 11 41 41 H 1.08997 * 109.88991 * 97.22228 * 15 14 12 42 42 H 1.09001 * 109.88722 * 218.39386 * 15 14 12 43 43 H 0.97004 * 119.99776 * 180.02562 * 20 19 17 44 44 H 1.08991 * 110.37222 * 265.28956 * 25 16 15 45 45 H 1.09002 * 110.36399 * 142.96398 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8048 -1.8029 1.2132 6 6 3.1512 -2.2920 2.4505 7 6 2.6312 -1.5648 3.4839 8 6 2.8268 -1.8511 4.9082 9 8 3.5001 -2.8055 5.2501 10 7 2.2609 -1.0576 5.8389 11 6 2.4568 -1.3434 7.2624 12 6 1.7138 -0.3000 8.0990 13 1 0.6777 -0.2068 7.7734 14 6 1.7930 -0.6402 9.6108 15 6 1.6459 0.7405 10.2841 16 7 2.0342 1.7536 9.2918 17 6 2.0227 3.1087 9.4883 18 1 2.3273 3.7724 8.6925 19 6 1.6194 3.6295 10.7103 20 7 1.2486 2.8206 11.6801 21 14 1.6044 5.4780 10.9785 22 1 2.0641 6.1614 9.7428 23 1 0.2247 5.9197 11.3049 24 1 2.5131 5.8226 12.1014 25 6 2.4374 1.0688 8.0501 26 16 1.6925 -0.2287 2.8316 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1320 -2.2669 0.2944 35 1 3.7691 -3.1665 2.5915 36 1 1.7239 -0.2971 5.5664 37 1 2.0677 -2.3357 7.4906 38 1 3.5206 -1.3074 7.4972 39 1 0.9752 -1.2999 9.9010 40 1 2.7551 -1.0908 9.8547 41 1 0.6108 0.8966 10.5876 42 1 2.3022 0.8015 11.1522 43 1 0.9665 3.1845 12.5339 44 1 3.5178 0.9262 8.0291 45 1 2.1122 1.6389 7.1798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029009776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:24 Heat of formation + Delta-G solvation = -16.663052 kcal Electronic energy + Delta-G solvation = -24218.360584 eV Core-core repulsion = 20747.589208 eV Total energy + Delta-G solvation = -3470.771376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92714 -39.44565 -38.94048 -36.16727 -35.95342 -34.35279 -31.81533 -30.54290 -29.53429 -28.04013 -27.38553 -26.13938 -24.84787 -22.58675 -22.13138 -21.77055 -21.49079 -20.26127 -19.05329 -18.61650 -17.53289 -16.87905 -16.70123 -16.56658 -16.19412 -15.78259 -15.39850 -15.32573 -14.86878 -14.78637 -14.52030 -14.16381 -13.99390 -13.84134 -13.54881 -13.38821 -13.20976 -13.07175 -12.92291 -12.76804 -12.67308 -12.35932 -12.11175 -12.07538 -11.98109 -11.91997 -11.86355 -11.58151 -11.53533 -11.48455 -11.18522 -10.71409 -10.27057 -9.64547 -9.53650 -8.90063 -7.85011 -5.20600 -0.51499 0.45095 0.91997 1.38283 1.46248 1.47277 1.57588 2.05849 2.14940 2.49587 3.33333 3.57411 3.58581 3.70936 3.85887 3.97974 4.00154 4.02840 4.20569 4.32677 4.41597 4.45407 4.60597 4.63195 4.68135 4.76072 4.78137 4.84128 4.89037 4.95707 5.01753 5.06364 5.07363 5.10271 5.21783 5.25369 5.34409 5.34777 5.41671 5.42658 5.45918 5.67886 5.77955 6.20126 6.36631 7.03333 7.10594 7.77860 8.42365 9.25736 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002780 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.827295 B =10069.811321 C =11578.741247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.151 4.151 4 C -0.177 4.177 5 C -0.161 4.161 6 C -0.051 4.051 7 C -0.303 4.303 8 C 0.588 3.412 9 O -0.574 6.574 10 N -0.715 5.715 11 C 0.144 3.856 12 C -0.097 4.097 13 H 0.090 0.910 14 C -0.122 4.122 15 C 0.183 3.817 16 N -0.629 5.629 17 C -0.241 4.241 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.979 3.021 22 H -0.264 1.264 23 H -0.291 1.291 24 H -0.294 1.294 25 C 0.137 3.863 26 S 0.223 5.777 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.168 0.832 35 H 0.150 0.850 36 H 0.407 0.593 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.014 0.986 42 H 0.005 0.995 43 H 0.246 0.754 44 H 0.018 0.982 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -8.235 -26.406 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 C -0.209 4.209 4 C -0.297 4.297 5 C -0.190 4.190 6 C -0.085 4.085 7 C -0.423 4.423 8 C 0.376 3.624 9 O -0.456 6.456 10 N -0.366 5.366 11 C 0.020 3.980 12 C -0.117 4.117 13 H 0.109 0.891 14 C -0.160 4.160 15 C 0.058 3.942 16 N -0.355 5.355 17 C -0.370 4.370 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.218 1.218 24 H -0.222 1.222 25 C 0.012 3.988 26 S 0.492 5.508 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.185 0.815 35 H 0.168 0.832 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.761 -7.550 -25.328 26.487 hybrid contribution 0.719 0.102 0.186 0.750 sum -1.042 -7.447 -25.142 26.242 Atomic orbital electron populations 1.21967 0.93199 1.02619 1.02997 1.19918 0.96427 0.95813 0.92660 1.21975 1.01548 0.94380 1.02987 1.24720 1.03505 1.01055 1.00460 1.20157 1.02063 0.97801 0.99003 1.20934 0.97407 0.99350 0.90853 1.24514 1.14463 1.06858 0.96493 1.17259 0.78671 0.81862 0.84604 1.90789 1.41664 1.30812 1.82348 1.45873 1.52913 1.31187 1.06607 1.21252 1.00226 0.98381 0.78109 1.22434 0.99927 0.93967 0.95335 0.89133 1.22721 1.02537 0.97031 0.93755 1.20922 0.96920 0.85811 0.90552 1.44812 1.77635 1.01991 1.11050 1.19514 1.37279 0.82222 0.98031 0.89872 1.25671 1.01899 1.02376 0.96150 1.70199 1.51679 1.34045 1.04193 0.85005 0.76834 0.79716 0.77753 1.18838 1.21783 1.22152 1.21762 0.95966 0.92089 0.88986 1.82985 1.46481 1.24826 0.96524 0.92892 0.90160 0.92169 0.87544 0.92351 0.90119 0.92952 0.81480 0.83212 0.75766 0.90239 0.91831 0.89443 0.90944 0.96781 0.97716 0.94443 0.96383 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.08 71.98 0.65 -0.73 16 2 C -0.03 -0.28 3.25 -11.54 -0.04 -0.32 16 3 C -0.15 -1.50 9.08 71.98 0.65 -0.85 16 4 C -0.18 -2.63 4.95 24.68 0.12 -2.51 16 5 C -0.16 -2.48 9.95 21.08 0.21 -2.27 16 6 C -0.05 -1.06 10.01 21.72 0.22 -0.84 16 7 C -0.30 -7.13 6.45 24.08 0.16 -6.98 16 8 C 0.59 17.04 7.78 86.42 0.67 17.71 16 9 O -0.57 -20.51 16.84 -4.36 -0.07 -20.58 16 10 N -0.72 -18.82 5.50 -467.18 -2.57 -21.39 16 11 C 0.14 4.04 5.13 86.38 0.44 4.49 16 12 C -0.10 -3.09 3.05 -9.40 -0.03 -3.12 16 13 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 14 C -0.12 -4.32 6.42 31.78 0.20 -4.11 16 15 C 0.18 9.05 5.37 86.73 0.47 9.51 16 16 N -0.63 -32.27 3.39 -691.99 -2.35 -34.62 16 17 C -0.24 -13.56 10.28 84.04 0.86 -12.69 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 20 N -0.95 -57.72 10.31 21.65 0.22 -57.50 16 21 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 C 0.14 5.43 6.65 86.86 0.58 6.01 16 26 S 0.22 3.97 21.37 -56.49 -1.21 2.76 16 27 H 0.05 0.57 7.90 -2.39 -0.02 0.55 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.60 7.90 -2.39 -0.02 0.59 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.41 9.37 7.59 -92.71 -0.70 8.66 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.93 7.96 -2.39 -0.02 1.91 16 39 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 41 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 42 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.02 0.74 7.91 -2.39 -0.02 0.72 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -71.58 378.87 1.96 -69.62 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.27 Total: 13.98 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.64 Total: -0.13 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -4.69 Total: -113.51 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.07 Total: -20.58 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.21 Total: 2.76 kcal Total: -71.58 1.96 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029009776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.957 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds