Wall clock time and date at job start Tue Mar 31 2020 13:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 C 1.50701 * 109.47288 * 179.97438 * 3 2 1 5 5 S 1.70614 * 124.52310 * 270.16947 * 4 3 2 6 6 C 1.75837 * 91.56300 * 180.19254 * 5 4 3 7 7 C 1.46582 * 125.45831 * 179.82623 * 6 5 4 8 8 O 1.21700 * 119.99827 * 179.97438 * 7 6 5 9 9 N 1.34770 * 119.99935 * 359.97438 * 7 6 5 10 10 C 1.46508 * 119.99787 * 179.97438 * 9 7 6 11 11 C 1.53944 * 113.73884 * 253.74155 * 10 9 7 12 12 N 1.47814 * 86.03586 * 222.08177 * 11 10 9 13 13 C 1.36932 * 134.45894 * 204.63986 * 12 11 10 14 14 H 1.08006 * 119.99806 * 179.86570 * 13 12 11 15 15 C 1.38805 * 120.00122 * 359.87629 * 13 12 11 16 16 N 1.31618 * 120.00034 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00307 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47128 * 59.99458 * 17 15 13 19 19 H 1.48494 * 109.47423 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47078 * 299.99878 * 17 15 13 21 21 C 1.47583 * 91.04738 * 24.55211 * 12 11 10 22 22 C 1.36647 * 109.08211 * 359.80899 * 6 5 4 23 23 C 1.33814 * 124.51917 * 89.99994 * 4 3 2 24 24 C 1.50699 * 122.45094 * 0.02562 * 23 4 3 25 25 C 1.53006 * 109.46866 * 84.73599 * 24 23 4 26 26 H 1.09005 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47053 * 299.99792 * 1 2 3 28 28 H 1.08999 * 109.46937 * 60.00074 * 1 2 3 29 29 H 1.09004 * 109.47133 * 240.00442 * 2 1 3 30 30 H 1.08993 * 109.46877 * 120.00337 * 2 1 3 31 31 H 1.09006 * 109.47190 * 59.99905 * 3 2 1 32 32 H 1.09000 * 109.47868 * 300.00093 * 3 2 1 33 33 H 0.97000 * 120.00370 * 359.97438 * 9 7 6 34 34 H 1.08998 * 112.94142 * 25.33209 * 10 9 7 35 35 H 1.08997 * 113.77231 * 336.34734 * 11 10 9 36 36 H 1.08998 * 113.77087 * 107.75074 * 11 10 9 37 37 H 0.96999 * 120.00203 * 180.02562 * 16 15 13 38 38 H 1.09003 * 113.76548 * 221.14828 * 21 12 11 39 39 H 1.09001 * 113.77158 * 89.75796 * 21 12 11 40 40 H 1.08003 * 123.35561 * 179.97438 * 22 6 5 41 41 H 1.09000 * 109.47247 * 324.73768 * 24 23 4 42 42 H 1.09001 * 109.47358 * 204.73194 * 24 23 4 43 43 H 1.09001 * 109.47002 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.46955 * 300.00219 * 25 24 23 45 45 H 1.09000 * 109.47050 * 60.00048 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 16 4.5134 1.4386 1.4067 6 6 5.9891 1.4473 0.4507 7 6 7.3520 1.4522 0.9905 8 8 8.3058 1.4576 0.2346 9 7 7.5487 1.4507 2.3237 10 6 8.9108 1.4550 2.8632 11 6 9.3469 0.1029 3.4559 12 7 9.9428 0.8928 4.5540 13 6 10.9571 0.6786 5.4487 14 1 11.2070 1.4389 6.1740 15 6 11.6644 -0.5155 5.4233 16 7 11.3597 -1.4421 4.5396 17 14 13.0486 -0.8075 6.6432 18 1 12.5124 -0.7373 8.0263 19 1 13.6397 -2.1495 6.4095 20 1 14.0937 0.2323 6.4642 21 6 9.0075 2.0052 4.2977 22 6 5.6620 1.4483 -0.8760 23 6 4.3058 1.4424 -1.1016 24 6 3.7168 1.4427 -2.4887 25 6 3.3962 2.8794 -2.9062 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 6.7885 1.4467 2.9262 34 1 9.6382 1.8885 2.1769 35 1 8.5154 -0.5281 3.7697 36 1 10.0792 -0.4278 2.8475 37 1 11.8537 -2.2768 4.5221 38 1 9.4694 2.9906 4.3600 39 1 8.0760 1.9344 4.8592 40 1 6.3956 1.4536 -1.6686 41 1 2.8023 0.8497 -2.4953 42 1 4.4338 1.0126 -3.1880 43 1 2.9706 2.8797 -3.9097 44 1 2.6793 3.3095 -2.2070 45 1 4.3107 3.4724 -2.8997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031371572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:16 Heat of formation + Delta-G solvation = 26.404781 kcal Electronic energy + Delta-G solvation = -24150.307373 eV Core-core repulsion = 20681.403559 eV Total energy + Delta-G solvation = -3468.903814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.74624 -38.91134 -37.44179 -35.15911 -33.55158 -32.86949 -31.82020 -30.23586 -27.83475 -26.73589 -24.84032 -24.36672 -23.97004 -22.37794 -21.76912 -20.36537 -19.69836 -18.65023 -17.92740 -16.79696 -16.44360 -15.80811 -15.16986 -15.04924 -14.88185 -14.68379 -14.30953 -14.04245 -13.86243 -13.83168 -13.66852 -13.10015 -12.82401 -12.70565 -12.29999 -12.11716 -11.92853 -11.80665 -11.63571 -11.53031 -11.45395 -11.39254 -11.23585 -11.07912 -10.88160 -10.78288 -10.73754 -10.47123 -10.07581 -9.72764 -9.53934 -8.81154 -8.77332 -8.57166 -8.39699 -6.93055 -5.77324 -3.11736 0.45952 1.37153 1.79312 2.27838 3.37284 3.40530 3.42182 3.45492 3.47527 4.35763 4.45319 4.58961 4.67184 4.68944 4.84159 4.95754 5.03217 5.12227 5.15601 5.20106 5.32383 5.39903 5.42526 5.43435 5.47368 5.55681 5.61772 5.62665 5.71744 5.78734 5.86097 5.90172 5.98811 6.01429 6.17893 6.22754 6.33665 6.38722 6.54292 6.70920 7.22682 7.33980 7.54633 7.80214 7.95777 8.44954 9.02240 9.68698 10.54908 11.39335 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023573 B = 0.002435 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.502843 B =11494.592691 C =12054.157879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.197 4.197 5 S 0.195 5.805 6 C -0.254 4.254 7 C 0.586 3.414 8 O -0.531 6.531 9 N -0.710 5.710 10 C 0.092 3.908 11 C 0.154 3.846 12 N -0.606 5.606 13 C -0.227 4.227 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.915 3.085 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.283 1.283 21 C 0.113 3.887 22 C -0.053 4.053 23 C -0.115 4.115 24 C -0.063 4.063 25 C -0.147 4.147 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.393 0.607 34 H 0.113 0.887 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.256 0.744 38 H 0.051 0.949 39 H 0.035 0.965 40 H 0.151 0.849 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.808 6.587 -12.305 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.317 4.317 5 S 0.465 5.535 6 C -0.375 4.375 7 C 0.371 3.629 8 O -0.410 6.410 9 N -0.360 5.360 10 C -0.012 4.012 11 C 0.028 3.972 12 N -0.333 5.333 13 C -0.354 4.354 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.745 3.255 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.014 4.014 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.103 4.103 25 C -0.205 4.205 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.227 0.773 34 H 0.131 0.869 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.169 0.831 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.113 6.393 -11.066 26.411 hybrid contribution 0.612 -0.326 -0.446 0.825 sum -22.501 6.066 -11.512 25.992 Atomic orbital electron populations 1.21778 0.95369 1.01946 1.01874 1.21561 0.95829 0.95646 1.02884 1.20235 0.87275 0.98014 1.03391 1.23976 1.00839 1.09552 0.97325 1.82980 0.94383 1.68518 1.07622 1.24678 0.97078 1.17755 0.97958 1.16978 0.86454 0.76709 0.82761 1.90827 1.41697 1.50365 1.58074 1.46049 1.10051 1.74205 1.05721 1.23983 0.81463 1.01294 0.94509 1.22718 0.95142 0.91382 0.87945 1.45706 1.34474 1.14872 1.38261 1.18931 1.06394 1.00642 1.09436 0.90058 1.24828 0.99889 0.96274 0.99324 1.69819 1.42651 1.07331 1.36690 0.86159 0.81726 0.77184 0.80421 1.21136 1.21507 1.20958 1.22871 0.93562 0.93690 0.91294 1.20598 0.95479 0.97251 0.95306 1.18612 0.92400 1.05668 0.96113 1.20245 1.00663 0.97759 0.91629 1.21754 1.01864 0.96032 1.00811 0.92457 0.92614 0.92647 0.91485 0.91590 0.90759 0.89777 0.77326 0.86894 0.95312 0.90365 0.93443 0.93079 0.94708 0.83130 0.90999 0.90857 0.92435 0.92671 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 3 C -0.05 -0.35 5.04 -27.89 -0.14 -0.49 16 4 C -0.20 -1.87 5.53 -35.86 -0.20 -2.07 16 5 S 0.19 2.06 22.10 -107.50 -2.38 -0.31 16 6 C -0.25 -3.53 6.45 -36.79 -0.24 -3.77 16 7 C 0.59 10.17 7.78 -12.90 -0.10 10.07 16 8 O -0.53 -11.17 16.46 5.19 0.09 -11.08 16 9 N -0.71 -11.87 5.37 -56.69 -0.30 -12.18 16 10 C 0.09 1.86 4.40 -70.15 -0.31 1.55 16 11 C 0.15 3.79 7.33 -2.84 -0.02 3.77 16 12 N -0.61 -15.82 3.70 -177.89 -0.66 -16.47 16 13 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 14 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 16 N -0.92 -27.79 11.39 55.49 0.63 -27.15 16 17 Si 0.92 22.34 29.55 -169.99 -5.02 17.31 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.11 2.30 8.69 -2.97 -0.03 2.27 16 22 C -0.05 -0.67 9.78 -40.43 -0.40 -1.07 16 23 C -0.12 -1.17 5.04 -106.45 -0.54 -1.70 16 24 C -0.06 -0.49 5.54 -27.88 -0.15 -0.64 16 25 C -0.15 -1.01 9.83 37.16 0.37 -0.64 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.46 7.74 -51.93 -0.40 0.06 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.51 6.37 -51.93 -0.33 0.18 16 33 H 0.39 5.55 7.83 -40.82 -0.32 5.23 16 34 H 0.11 2.45 7.50 -51.93 -0.39 2.06 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 2.17 7.17 -51.93 -0.37 1.80 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 40 H 0.15 1.89 8.06 -52.48 -0.42 1.47 16 41 H 0.07 0.48 7.07 -51.93 -0.37 0.11 16 42 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 0.37 7.21 -51.93 -0.37 -0.01 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -33.11 381.91 -10.86 -43.97 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.17 Total: 1.14 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.80 Total: -0.98 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.33 Total: -55.81 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.38 Total: -0.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.11 -10.86 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031371572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.375 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds