Wall clock time and date at job start Tue Mar 31 2020 13:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 C 1.50701 * 109.47288 * 179.97438 * 3 2 1 5 5 S 1.70614 * 124.52310 * 270.16947 * 4 3 2 6 6 C 1.75837 * 91.56300 * 180.19254 * 5 4 3 7 7 C 1.46582 * 125.45831 * 179.82623 * 6 5 4 8 8 O 1.21700 * 119.99827 * 179.97438 * 7 6 5 9 9 N 1.34770 * 119.99935 * 359.97438 * 7 6 5 10 10 C 1.46508 * 119.99787 * 179.97438 * 9 7 6 11 11 C 1.53944 * 113.73884 * 253.74155 * 10 9 7 12 12 N 1.47814 * 86.03586 * 222.08177 * 11 10 9 13 13 C 1.36932 * 134.45894 * 204.63986 * 12 11 10 14 14 H 1.08006 * 119.99806 * 179.86570 * 13 12 11 15 15 C 1.38805 * 120.00122 * 359.87629 * 13 12 11 16 16 N 1.31618 * 120.00034 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00307 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47128 * 59.99458 * 17 15 13 19 19 H 1.48494 * 109.47423 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47078 * 299.99878 * 17 15 13 21 21 C 1.47583 * 91.04738 * 24.55211 * 12 11 10 22 22 C 1.36647 * 109.08211 * 359.80899 * 6 5 4 23 23 C 1.33814 * 124.51917 * 89.99994 * 4 3 2 24 24 C 1.50699 * 122.45094 * 0.02562 * 23 4 3 25 25 C 1.53006 * 109.46866 * 84.73599 * 24 23 4 26 26 H 1.09005 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47053 * 299.99792 * 1 2 3 28 28 H 1.08999 * 109.46937 * 60.00074 * 1 2 3 29 29 H 1.09004 * 109.47133 * 240.00442 * 2 1 3 30 30 H 1.08993 * 109.46877 * 120.00337 * 2 1 3 31 31 H 1.09006 * 109.47190 * 59.99905 * 3 2 1 32 32 H 1.09000 * 109.47868 * 300.00093 * 3 2 1 33 33 H 0.97000 * 120.00370 * 359.97438 * 9 7 6 34 34 H 1.08998 * 112.94142 * 25.33209 * 10 9 7 35 35 H 1.08997 * 113.77231 * 336.34734 * 11 10 9 36 36 H 1.08998 * 113.77087 * 107.75074 * 11 10 9 37 37 H 0.96999 * 120.00203 * 180.02562 * 16 15 13 38 38 H 1.09003 * 113.76548 * 221.14828 * 21 12 11 39 39 H 1.09001 * 113.77158 * 89.75796 * 21 12 11 40 40 H 1.08003 * 123.35561 * 179.97438 * 22 6 5 41 41 H 1.09000 * 109.47247 * 324.73768 * 24 23 4 42 42 H 1.09001 * 109.47358 * 204.73194 * 24 23 4 43 43 H 1.09001 * 109.47002 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.46955 * 300.00219 * 25 24 23 45 45 H 1.09000 * 109.47050 * 60.00048 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 16 4.5134 1.4386 1.4067 6 6 5.9891 1.4473 0.4507 7 6 7.3520 1.4522 0.9905 8 8 8.3058 1.4576 0.2346 9 7 7.5487 1.4507 2.3237 10 6 8.9108 1.4550 2.8632 11 6 9.3469 0.1029 3.4559 12 7 9.9428 0.8928 4.5540 13 6 10.9571 0.6786 5.4487 14 1 11.2070 1.4389 6.1740 15 6 11.6644 -0.5155 5.4233 16 7 11.3597 -1.4421 4.5396 17 14 13.0486 -0.8075 6.6432 18 1 12.5124 -0.7373 8.0263 19 1 13.6397 -2.1495 6.4095 20 1 14.0937 0.2323 6.4642 21 6 9.0075 2.0052 4.2977 22 6 5.6620 1.4483 -0.8760 23 6 4.3058 1.4424 -1.1016 24 6 3.7168 1.4427 -2.4887 25 6 3.3962 2.8794 -2.9062 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 6.7885 1.4467 2.9262 34 1 9.6382 1.8885 2.1769 35 1 8.5154 -0.5281 3.7697 36 1 10.0792 -0.4278 2.8475 37 1 11.8537 -2.2768 4.5221 38 1 9.4694 2.9906 4.3600 39 1 8.0760 1.9344 4.8592 40 1 6.3956 1.4536 -1.6686 41 1 2.8023 0.8497 -2.4953 42 1 4.4338 1.0126 -3.1880 43 1 2.9706 2.8797 -3.9097 44 1 2.6793 3.3095 -2.2070 45 1 4.3107 3.4724 -2.8997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031371572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:16 Heat of formation + Delta-G solvation = 6.658215 kcal Electronic energy + Delta-G solvation = -24151.163649 eV Core-core repulsion = 20681.403559 eV Total energy + Delta-G solvation = -3469.760090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12625 -39.96302 -39.06206 -35.78563 -35.23702 -33.89325 -33.47678 -30.98003 -29.59010 -27.80183 -26.67628 -25.41974 -25.00216 -23.78811 -22.31286 -21.64231 -21.34252 -19.61108 -19.03279 -18.78259 -17.55114 -17.16294 -16.98604 -16.11780 -15.95954 -15.80959 -15.71609 -15.13633 -14.81603 -14.79206 -14.58143 -14.36832 -13.82945 -13.74634 -13.44556 -13.37115 -13.26839 -12.86687 -12.82777 -12.75557 -12.65343 -12.40917 -12.37908 -12.35064 -12.01766 -11.99099 -11.80353 -11.72376 -11.56777 -11.37474 -11.18115 -10.90213 -10.14693 -9.61924 -9.33684 -9.01253 -7.93616 -5.29938 -0.51725 0.46008 0.90793 1.32792 1.44667 1.49258 1.55383 2.01636 2.13038 2.48084 3.21605 3.36081 3.67946 3.75284 3.78723 4.05787 4.06930 4.17396 4.26030 4.27806 4.38610 4.44690 4.55744 4.62561 4.69243 4.71604 4.75695 4.84653 4.85901 4.96411 4.99464 5.01068 5.06091 5.15383 5.18796 5.24867 5.29098 5.37137 5.44167 5.45750 5.49770 5.57124 5.60499 5.85675 6.42344 6.85181 7.08564 7.55625 8.47842 9.23107 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023573 B = 0.002435 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.502843 B =11494.592691 C =12054.157879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.050 4.050 4 C -0.180 4.180 5 S 0.230 5.770 6 C -0.297 4.297 7 C 0.586 3.414 8 O -0.578 6.578 9 N -0.700 5.700 10 C 0.119 3.881 11 C 0.153 3.847 12 N -0.637 5.637 13 C -0.237 4.237 14 H 0.092 0.908 15 C -0.070 4.070 16 N -0.956 5.956 17 Si 0.986 3.014 18 H -0.273 1.273 19 H -0.296 1.296 20 H -0.274 1.274 21 C 0.123 3.877 22 C -0.049 4.049 23 C -0.126 4.126 24 C -0.062 4.062 25 C -0.145 4.145 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.409 0.591 34 H 0.096 0.904 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.249 0.751 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.659 7.846 -11.897 30.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.089 4.089 4 C -0.300 4.300 5 S 0.501 5.499 6 C -0.417 4.417 7 C 0.374 3.626 8 O -0.460 6.460 9 N -0.351 5.351 10 C 0.013 3.987 11 C 0.026 3.974 12 N -0.364 5.364 13 C -0.365 4.365 14 H 0.110 0.890 15 C -0.263 4.263 16 N -0.605 5.605 17 Si 0.813 3.187 18 H -0.198 1.198 19 H -0.222 1.222 20 H -0.200 1.200 21 C -0.002 4.002 22 C -0.083 4.083 23 C -0.138 4.138 24 C -0.101 4.101 25 C -0.202 4.202 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.245 0.755 34 H 0.114 0.886 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.159 0.841 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -26.022 7.697 -10.633 29.146 hybrid contribution 1.343 -0.689 -0.641 1.639 sum -24.680 7.008 -11.274 28.023 Atomic orbital electron populations 1.21759 0.94174 1.02247 1.02553 1.21547 0.96836 0.95071 1.02370 1.20396 0.85049 0.98647 1.04847 1.24430 1.02241 1.06804 0.96575 1.82786 0.92225 1.67694 1.07235 1.24338 0.96627 1.21549 0.99159 1.17429 0.87577 0.75275 0.82305 1.90794 1.43696 1.52495 1.59023 1.45765 1.09084 1.74146 1.06075 1.23288 0.82882 0.98034 0.94521 1.22585 0.93984 0.92948 0.87889 1.46029 1.35330 1.16841 1.38247 1.19410 1.06815 1.00784 1.09469 0.88985 1.25764 1.02783 0.96318 1.01466 1.70040 1.44060 1.07613 1.38747 0.85050 0.78638 0.76608 0.78403 1.19829 1.22224 1.20015 1.23012 0.93590 0.92865 0.90743 1.20764 0.96711 0.96144 0.94717 1.18764 0.91274 1.06003 0.97738 1.20308 1.01152 0.98667 0.90003 1.21742 1.01463 0.95113 1.01905 0.92412 0.92205 0.91717 0.91746 0.92479 0.89540 0.88099 0.75495 0.88631 0.95659 0.94704 0.94219 0.91292 0.91604 0.84082 0.89374 0.90962 0.90883 0.92089 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.25 5.92 30.59 0.18 -1.06 16 3 C -0.05 -0.53 5.04 29.85 0.15 -0.38 16 4 C -0.18 -2.98 5.53 24.68 0.14 -2.84 16 5 S 0.23 4.45 22.10 -56.49 -1.25 3.20 16 6 C -0.30 -8.22 6.45 24.08 0.16 -8.06 16 7 C 0.59 20.87 7.78 86.42 0.67 21.54 16 8 O -0.58 -25.53 16.46 -4.35 -0.07 -25.60 16 9 N -0.70 -23.41 5.37 -451.47 -2.42 -25.84 16 10 C 0.12 4.87 4.40 46.74 0.21 5.07 16 11 C 0.15 7.77 7.33 86.44 0.63 8.40 16 12 N -0.64 -33.54 3.70 -716.72 -2.65 -36.19 16 13 C -0.24 -13.49 10.70 84.03 0.90 -12.59 16 14 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 15 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 16 N -0.96 -59.94 11.39 21.65 0.25 -59.69 16 17 Si 0.99 46.48 29.55 68.60 2.03 48.51 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 C 0.12 4.87 8.69 86.48 0.75 5.62 16 22 C -0.05 -1.23 9.78 21.72 0.21 -1.02 16 23 C -0.13 -2.35 5.04 -21.05 -0.11 -2.46 16 24 C -0.06 -0.82 5.54 29.85 0.17 -0.66 16 25 C -0.14 -1.65 9.83 71.98 0.71 -0.94 16 26 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.72 7.74 -2.39 -0.02 0.70 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.10 0.80 6.37 -2.39 -0.02 0.79 16 33 H 0.41 11.07 7.83 -92.71 -0.73 10.34 16 34 H 0.10 4.30 7.50 -2.39 -0.02 4.28 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 36 H 0.03 2.05 7.17 -2.39 -0.02 2.04 16 37 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.09 0.90 7.07 -2.39 -0.02 0.88 16 42 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.62 7.21 -2.39 -0.02 0.61 16 45 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -74.35 381.91 2.08 -72.27 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.26 Total: 16.79 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.94 Total: 6.55 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -4.83 Total: -121.72 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.07 Total: -25.60 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.25 Total: 3.20 kcal Total: -74.35 2.08 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031371572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.926 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds