Wall clock time and date at job start Tue Mar 31 2020 13:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 C 1.33818 * 124.51688 * 89.71990 * 5 4 2 7 7 C 1.37480 * 115.09385 * 179.85883 * 6 5 4 8 8 C 1.36643 * 113.29961 * 0.42438 * 7 6 5 9 9 C 1.46585 * 125.45633 * 179.79383 * 8 7 6 10 10 O 1.21702 * 120.00146 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99700 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99800 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46754 * 179.97438 * 12 11 9 14 14 C 1.53951 * 113.74399 * 273.74049 * 13 12 11 15 15 N 1.47811 * 86.03490 * 222.08913 * 14 13 12 16 16 C 1.36943 * 134.45234 * 204.64355 * 15 14 13 17 17 H 1.08007 * 119.99739 * 179.86510 * 16 15 14 18 18 C 1.38807 * 119.99820 * 359.86799 * 16 15 14 19 19 N 1.31616 * 120.00504 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99677 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47253 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47261 * 120.00013 * 20 18 16 23 23 H 1.48504 * 109.46962 * 239.99701 * 20 18 16 24 24 C 1.47579 * 91.05636 * 24.54922 * 15 14 13 25 25 S 1.70611 * 124.52250 * 270.03086 * 5 4 2 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 34 34 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 35 35 H 1.07991 * 122.45275 * 0.02562 * 6 5 4 36 36 H 1.08003 * 123.34532 * 180.22024 * 7 6 5 37 37 H 0.97004 * 120.00334 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.47162 * 299.99811 * 12 11 9 39 39 H 1.09000 * 109.47127 * 60.00020 * 12 11 9 40 40 H 1.09000 * 112.94780 * 45.33791 * 13 12 11 41 41 H 1.08995 * 113.76207 * 336.35267 * 14 13 12 42 42 H 1.08996 * 113.76597 * 107.74652 * 14 13 12 43 43 H 0.96998 * 119.99985 * 180.02562 * 19 18 16 44 44 H 1.08996 * 113.77103 * 221.15405 * 24 15 14 45 45 H 1.08996 * 113.77019 * 89.75295 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.8294 -1.1891 6 6 4.2070 -1.8485 -0.6326 7 6 5.5772 -1.7504 -0.6885 8 6 6.0128 -0.6101 -1.3025 9 6 7.4156 -0.2348 -1.5026 10 8 8.3037 -0.9669 -1.1072 11 7 7.7217 0.9210 -2.1246 12 6 9.1237 1.2964 -2.3241 13 6 9.1931 2.6418 -3.0493 14 6 9.1320 2.5231 -4.5830 15 7 10.1948 3.5502 -4.6023 16 6 10.6100 4.4836 -5.5143 17 1 11.4362 5.1382 -5.2790 18 6 9.9688 4.5885 -6.7409 19 7 8.9616 3.7913 -7.0274 20 14 10.5357 5.8614 -7.9852 21 1 11.6775 6.6276 -7.4244 22 1 10.9625 5.1783 -9.2328 23 1 9.4174 6.7905 -8.2873 24 6 10.6269 3.1676 -3.2441 25 16 4.6210 0.3347 -1.8145 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6053 -1.7198 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.7043 -2.6880 -0.1755 36 1 6.2429 -2.4986 -0.2842 37 1 7.0138 1.5047 -2.4394 38 1 9.6191 1.3787 -1.3566 39 1 9.6220 0.5346 -2.9238 40 1 8.5063 3.3819 -2.6387 41 1 9.4521 1.5525 -4.9616 42 1 8.1877 2.8581 -5.0122 43 1 8.5139 3.8644 -7.8848 44 1 10.8740 4.0163 -2.6063 45 1 11.3871 2.3867 -3.2285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031735929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:47 Heat of formation + Delta-G solvation = 9.690505 kcal Electronic energy + Delta-G solvation = -23936.346049 eV Core-core repulsion = 20466.717449 eV Total energy + Delta-G solvation = -3469.628600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93970 -39.74534 -39.06039 -36.85426 -35.80874 -34.19569 -31.87473 -30.59219 -28.44428 -28.00763 -26.99909 -26.54149 -24.66279 -23.81020 -22.34391 -21.31192 -21.02622 -19.87479 -18.85742 -18.71907 -17.40163 -17.00288 -16.88367 -16.46810 -16.20719 -15.81453 -15.65101 -15.36277 -15.04049 -14.72523 -14.54519 -14.36218 -14.12788 -13.60095 -13.37031 -13.29907 -13.15420 -13.10962 -12.89899 -12.88333 -12.66849 -12.53094 -12.24568 -11.94615 -11.87833 -11.81790 -11.70277 -11.60120 -11.51626 -11.33934 -11.11801 -10.88054 -10.23221 -9.60066 -9.48646 -8.92648 -7.90920 -5.24425 -0.50096 0.47054 0.92788 1.39644 1.45621 1.46625 1.56891 2.07708 2.16926 2.47061 3.29644 3.37509 3.66203 3.70436 3.82598 3.98217 4.02874 4.05266 4.27398 4.32211 4.40105 4.44501 4.56477 4.73214 4.75233 4.77306 4.82465 4.84145 4.84958 4.96194 5.03095 5.05436 5.06935 5.12785 5.20683 5.24346 5.30301 5.31367 5.39844 5.46241 5.52732 5.53097 5.62147 5.93215 6.39151 6.91904 7.05154 7.60302 8.55747 9.26144 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002529 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.539913 B =11067.985246 C =12244.470502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.161 4.161 4 C -0.049 4.049 5 C -0.177 4.177 6 C -0.159 4.159 7 C -0.051 4.051 8 C -0.304 4.304 9 C 0.586 3.414 10 O -0.576 6.576 11 N -0.714 5.714 12 C 0.142 3.858 13 C -0.118 4.118 14 C 0.165 3.835 15 N -0.645 5.645 16 C -0.234 4.234 17 H 0.084 0.916 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.290 1.290 24 C 0.128 3.872 25 S 0.221 5.779 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.168 0.832 36 H 0.150 0.850 37 H 0.406 0.594 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.012 0.988 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.064 0.936 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.684 -9.390 16.524 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.219 4.219 4 C -0.088 4.088 5 C -0.297 4.297 6 C -0.189 4.189 7 C -0.085 4.085 8 C -0.424 4.424 9 C 0.374 3.626 10 O -0.458 6.458 11 N -0.364 5.364 12 C 0.018 3.982 13 C -0.137 4.137 14 C 0.040 3.960 15 N -0.372 5.372 16 C -0.362 4.362 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.217 1.217 24 C 0.003 3.997 25 S 0.490 5.510 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.186 0.814 36 H 0.167 0.833 37 H 0.242 0.758 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.182 -8.287 15.744 25.438 hybrid contribution 0.529 -0.669 -0.541 1.010 sum -17.652 -8.956 15.202 24.958 Atomic orbital electron populations 1.21820 0.93612 1.02499 1.02298 1.21102 0.96528 0.95922 0.97229 1.22046 1.01037 0.96360 1.02445 1.20474 0.85541 1.03400 0.99431 1.24591 1.02148 0.99165 1.03813 1.20114 0.92320 1.01597 1.04872 1.20933 0.96288 0.95581 0.95712 1.24507 0.96557 1.04405 1.16938 1.17309 0.87297 0.80812 0.77144 1.90778 1.49384 1.52762 1.52855 1.45865 1.09605 1.21908 1.59037 1.21281 0.81326 0.95282 1.00358 1.23436 0.98983 0.95775 0.95535 1.22266 0.92633 0.89836 0.91252 1.46413 1.38029 1.37316 1.15445 1.19477 1.12748 1.09058 0.94967 0.89803 1.25641 0.99025 1.01884 0.99656 1.70005 1.25256 1.41837 1.23111 0.85001 0.77595 0.78148 0.78517 1.18957 1.22154 1.21657 1.22684 0.94132 0.97286 0.85620 1.83127 0.92789 1.21097 1.54007 0.92354 0.91709 0.92206 0.90856 0.92259 0.91957 0.93267 0.87952 0.89983 0.81445 0.83264 0.75795 0.90104 0.92474 0.87798 0.97045 0.93667 0.94276 0.91746 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 2 C -0.09 -0.90 2.91 -10.79 -0.03 -0.93 16 3 C -0.16 -1.98 8.88 71.98 0.64 -1.34 16 4 C -0.05 -0.53 5.12 29.85 0.15 -0.38 16 5 C -0.18 -2.79 4.91 24.68 0.12 -2.67 16 6 C -0.16 -2.61 10.00 21.09 0.21 -2.40 16 7 C -0.05 -1.12 10.01 21.72 0.22 -0.90 16 8 C -0.30 -7.71 6.45 24.08 0.16 -7.55 16 9 C 0.59 18.38 7.78 86.42 0.67 19.05 16 10 O -0.58 -21.83 16.84 -4.35 -0.07 -21.91 16 11 N -0.71 -20.90 5.55 -467.17 -2.59 -23.49 16 12 C 0.14 4.44 5.51 86.38 0.48 4.91 16 13 C -0.12 -4.15 3.93 -10.13 -0.04 -4.19 16 14 C 0.17 7.80 7.08 86.44 0.61 8.41 16 15 N -0.65 -33.25 3.70 -716.12 -2.65 -35.90 16 16 C -0.23 -13.23 10.70 84.03 0.90 -12.33 16 17 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 18 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 19 N -0.95 -57.64 11.39 21.65 0.25 -57.40 16 20 Si 0.98 45.92 29.55 68.60 2.03 47.94 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 C 0.13 5.01 8.51 86.49 0.74 5.75 16 25 S 0.22 4.28 20.53 -56.49 -1.16 3.13 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.72 6.12 -2.39 -0.01 0.70 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.41 10.61 7.59 -92.71 -0.70 9.91 16 38 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 1.98 7.87 -2.39 -0.02 1.96 16 40 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.01 0.58 7.92 -2.39 -0.02 0.56 16 42 H 0.04 2.36 7.16 -2.39 -0.02 2.34 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -71.50 381.96 2.02 -69.48 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.27 Total: 16.70 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.95 Total: 1.45 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -5.00 Total: -116.79 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.91 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.16 Total: 3.13 kcal Total: -71.50 2.02 -69.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031735929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.166 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds