Wall clock time and date at job start Tue Mar 31 2020 13:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47460 * 2 1 4 4 C 1.50697 * 109.47350 * 180.02562 * 3 2 1 5 5 C 1.37474 * 122.45270 * 264.98319 * 4 3 2 6 6 C 1.36652 * 113.30046 * 180.02562 * 5 4 3 7 7 C 1.46579 * 125.45927 * 179.97438 * 6 5 4 8 8 O 1.21705 * 119.99949 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00240 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47469 * 179.97438 * 10 9 7 12 12 C 1.53496 * 114.20755 * 174.99706 * 11 10 9 13 13 N 1.47062 * 87.98485 * 87.71788 * 12 11 10 14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11 15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12 16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12 17 17 N 1.31618 * 119.99998 * 195.17052 * 16 14 13 18 18 Si 1.86797 * 119.99840 * 15.16580 * 16 14 13 19 19 H 1.48503 * 109.47450 * 270.00422 * 18 16 14 20 20 H 1.48503 * 109.47360 * 30.00092 * 18 16 14 21 21 H 1.48498 * 109.47360 * 150.00270 * 18 16 14 22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11 23 23 S 1.75835 * 109.08093 * 0.25671 * 6 5 4 24 24 C 1.33818 * 122.45124 * 84.99866 * 4 3 2 25 25 C 1.50700 * 124.51852 * 359.94842 * 24 4 3 26 26 H 1.09003 * 109.46263 * 299.99646 * 1 2 3 27 27 H 1.08998 * 109.46893 * 59.99537 * 1 2 3 28 28 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46862 * 239.99909 * 2 1 3 30 30 H 1.09000 * 109.47409 * 120.00544 * 2 1 3 31 31 H 1.09009 * 109.46824 * 60.00490 * 3 2 1 32 32 H 1.09000 * 109.47253 * 300.00639 * 3 2 1 33 33 H 1.08000 * 123.35052 * 0.03638 * 5 4 3 34 34 H 0.97003 * 120.00395 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46977 * 59.98882 * 10 9 7 36 36 H 1.09006 * 109.46552 * 299.99228 * 10 9 7 37 37 H 1.09003 * 113.27809 * 41.92931 * 11 10 9 38 38 H 1.09008 * 113.46447 * 332.93223 * 12 11 10 39 39 H 1.08996 * 113.51824 * 202.51032 * 12 11 10 40 40 H 0.96995 * 120.00365 * 354.90363 * 17 16 14 41 41 H 1.08997 * 113.47135 * 87.43718 * 22 13 12 42 42 H 1.09007 * 113.47198 * 217.88025 * 22 13 12 43 43 H 1.09005 * 109.47330 * 89.99716 * 25 24 4 44 44 H 1.09002 * 109.47597 * 209.99750 * 25 24 4 45 45 H 1.08999 * 109.47247 * 329.99963 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2853 1.5437 1.1547 6 6 5.6343 1.5252 0.9375 7 6 6.6641 1.6170 1.9765 8 8 6.3417 1.7200 3.1455 9 7 7.9681 1.5883 1.6372 10 6 8.9975 1.6794 2.6756 11 6 10.3823 1.6233 2.0275 12 6 11.5449 1.8319 3.0077 13 7 11.5226 0.3835 3.2615 14 6 11.8659 -0.4410 4.2995 15 1 12.1447 -0.0198 5.2542 16 6 11.8556 -1.8180 4.1248 17 7 11.8889 -2.6145 5.1721 18 14 11.7946 -2.5406 2.4033 19 1 10.3791 -2.7276 1.9949 20 1 12.4655 -1.6162 1.4543 21 1 12.4904 -3.8524 2.3921 22 6 10.9753 0.2098 1.9076 23 16 5.9367 1.3820 -0.7887 24 6 4.2646 1.3441 -1.1259 25 6 3.6745 1.2223 -2.5072 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.8430 1.6291 2.1363 34 1 8.2252 1.5066 0.7054 35 1 8.8876 0.8466 3.3702 36 1 8.8866 2.6199 3.2155 37 1 10.4552 2.2152 1.1151 38 1 11.2763 2.4296 3.8788 39 1 12.4619 2.1745 2.5283 40 1 11.9950 -2.2422 6.0614 41 1 11.7417 0.1246 1.1372 42 1 10.2214 -0.5747 1.8415 43 1 3.5313 2.2167 -2.9301 44 1 4.3515 0.6513 -3.1425 45 1 2.7137 0.7109 -2.4480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032174933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:03 Heat of formation + Delta-G solvation = 34.856840 kcal Electronic energy + Delta-G solvation = -24232.570518 eV Core-core repulsion = 20764.033213 eV Total energy + Delta-G solvation = -3468.537306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.87881 -39.02220 -38.31317 -34.55449 -34.38934 -32.43828 -32.21338 -29.41433 -28.59753 -26.72549 -25.35795 -25.28034 -23.50504 -22.16373 -21.71449 -20.56283 -19.38889 -18.64969 -17.92355 -17.40361 -16.60673 -15.87376 -15.46461 -15.12623 -15.05910 -14.93191 -14.49748 -14.20937 -13.84097 -13.72352 -13.47838 -13.32558 -13.22212 -13.02029 -12.77620 -12.42890 -12.17765 -12.10452 -11.77570 -11.68298 -11.54443 -11.42571 -11.05359 -11.04065 -10.87758 -10.79326 -10.43810 -10.12817 -9.93424 -9.49665 -9.16719 -8.98118 -8.76710 -8.68539 -8.58362 -7.16387 -6.27546 -3.19604 0.34428 1.25813 1.67130 2.16591 3.18141 3.26131 3.41876 3.47998 3.62932 4.44561 4.53904 4.61465 4.66927 4.76924 4.79522 4.82889 4.87924 4.98755 5.11916 5.15340 5.17895 5.25956 5.30692 5.46105 5.47107 5.49195 5.55544 5.66940 5.74051 5.76024 5.79689 5.92202 5.99259 6.11572 6.15272 6.22886 6.23993 6.31705 6.38184 6.40959 6.53153 6.86258 7.14990 7.53500 8.23345 8.27273 9.00486 9.53855 10.39709 11.22523 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002757 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.779709 B =10151.849821 C =10395.237264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.058 4.058 4 C -0.119 4.119 5 C -0.049 4.049 6 C -0.259 4.259 7 C 0.587 3.413 8 O -0.528 6.528 9 N -0.721 5.721 10 C 0.148 3.852 11 C -0.148 4.148 12 C 0.128 3.872 13 N -0.623 5.623 14 C -0.304 4.304 15 H 0.082 0.918 16 C -0.024 4.024 17 N -0.932 5.932 18 Si 1.062 2.938 19 H -0.294 1.294 20 H -0.282 1.282 21 H -0.296 1.296 22 C 0.104 3.896 23 S 0.195 5.805 24 C -0.198 4.198 25 C -0.085 4.085 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.395 0.605 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.261 0.739 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.873 10.819 -18.777 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.098 4.098 4 C -0.132 4.132 5 C -0.082 4.082 6 C -0.379 4.379 7 C 0.372 3.628 8 O -0.406 6.406 9 N -0.372 5.372 10 C 0.025 3.975 11 C -0.167 4.167 12 C 0.001 3.999 13 N -0.352 5.352 14 C -0.431 4.431 15 H 0.100 0.900 16 C -0.224 4.224 17 N -0.574 5.574 18 Si 0.893 3.107 19 H -0.222 1.222 20 H -0.209 1.209 21 H -0.223 1.223 22 C -0.022 4.022 23 S 0.464 5.536 24 C -0.317 4.317 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.169 0.831 34 H 0.229 0.771 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.738 9.240 -19.430 28.531 hybrid contribution -0.790 1.407 1.248 2.040 sum -19.528 10.647 -18.182 28.728 Atomic orbital electron populations 1.21785 0.95634 1.01769 1.01800 1.21527 0.95604 0.96141 1.02608 1.20330 0.89076 0.97453 1.02906 1.18633 0.97420 1.05793 0.91310 1.20612 0.90951 0.96793 0.99821 1.24568 0.98082 1.18305 0.96977 1.16918 0.81684 0.76916 0.87284 1.90848 1.81646 1.49802 1.18352 1.45932 1.05551 1.74668 1.11030 1.21103 0.83918 1.03062 0.89399 1.23180 0.94421 0.99689 0.99454 1.22322 0.93763 0.88520 0.95298 1.46272 1.75397 1.02153 1.11350 1.20133 1.45529 0.88497 0.88902 0.90049 1.25758 0.99286 0.91683 1.05631 1.70887 1.51334 1.36497 0.98718 0.83782 0.76350 0.75398 0.75121 1.22153 1.20853 1.22295 1.22768 0.95658 0.94467 0.89274 1.82952 1.03441 1.68224 0.98993 1.23988 0.98325 1.09094 1.00338 1.20403 1.01207 1.02800 0.89966 0.92604 0.92798 0.92642 0.91894 0.91604 0.90800 0.90984 0.83054 0.77122 0.89564 0.91280 0.90300 0.93366 0.94220 0.92828 0.93540 0.93001 0.90529 0.91100 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.86 5.85 -26.73 -0.16 -1.01 16 3 C -0.06 -0.43 4.82 -27.89 -0.13 -0.56 16 4 C -0.12 -1.15 5.04 -106.45 -0.54 -1.68 16 5 C -0.05 -0.58 9.78 -40.43 -0.40 -0.98 16 6 C -0.26 -3.40 6.45 -36.79 -0.24 -3.63 16 7 C 0.59 9.53 7.78 -12.90 -0.10 9.43 16 8 O -0.53 -10.58 16.84 5.18 0.09 -10.49 16 9 N -0.72 -10.72 5.55 -61.65 -0.34 -11.06 16 10 C 0.15 2.53 5.52 -4.04 -0.02 2.51 16 11 C -0.15 -2.43 4.17 -89.97 -0.37 -2.80 16 12 C 0.13 2.45 8.25 -8.52 -0.07 2.38 16 13 N -0.62 -15.28 3.46 -184.63 -0.64 -15.91 16 14 C -0.30 -8.87 11.03 -15.06 -0.17 -9.03 16 15 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 16 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 17 N -0.93 -30.00 13.70 55.49 0.76 -29.24 16 18 Si 1.06 26.96 25.50 -169.99 -4.34 22.62 16 19 H -0.29 -7.22 6.97 56.52 0.39 -6.82 16 20 H -0.28 -6.55 5.66 56.52 0.32 -6.23 16 21 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 22 C 0.10 2.14 5.13 -8.39 -0.04 2.10 16 23 S 0.19 1.90 22.10 -107.50 -2.38 -0.48 16 24 C -0.20 -1.76 6.28 -35.86 -0.23 -1.99 16 25 C -0.09 -0.51 9.70 36.01 0.35 -0.16 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.44 7.24 -51.93 -0.38 0.06 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.53 8.11 -51.92 -0.42 0.10 16 32 H 0.07 0.44 7.46 -51.93 -0.39 0.05 16 33 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.39 4.78 7.59 -40.82 -0.31 4.47 16 35 H 0.09 1.83 7.93 -51.93 -0.41 1.42 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.91 8.12 -51.92 -0.42 0.48 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 8.32 8.73 -40.82 -0.36 7.96 16 41 H 0.05 0.92 7.02 -51.93 -0.36 0.56 16 42 H 0.05 1.13 6.21 -51.93 -0.32 0.80 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.41 6.39 -51.93 -0.33 0.08 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -34.93 376.29 -10.25 -45.18 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.24 Total: 0.51 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.84 Total: -6.80 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.22 Total: -56.22 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 26.96 SS G_CDS: -4.34 Total: 22.62 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.38 Total: -0.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.93 -10.25 -45.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032174933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.041 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds