Wall clock time and date at job start Tue Mar 31 2020 13:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47460 * 2 1 4 4 C 1.50697 * 109.47350 * 180.02562 * 3 2 1 5 5 C 1.37474 * 122.45270 * 264.98319 * 4 3 2 6 6 C 1.36652 * 113.30046 * 180.02562 * 5 4 3 7 7 C 1.46579 * 125.45927 * 179.97438 * 6 5 4 8 8 O 1.21705 * 119.99949 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00240 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47469 * 179.97438 * 10 9 7 12 12 C 1.53496 * 114.20755 * 174.99706 * 11 10 9 13 13 N 1.47062 * 87.98485 * 87.71788 * 12 11 10 14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11 15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12 16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12 17 17 N 1.31618 * 119.99998 * 195.17052 * 16 14 13 18 18 Si 1.86797 * 119.99840 * 15.16580 * 16 14 13 19 19 H 1.48503 * 109.47450 * 270.00422 * 18 16 14 20 20 H 1.48503 * 109.47360 * 30.00092 * 18 16 14 21 21 H 1.48498 * 109.47360 * 150.00270 * 18 16 14 22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11 23 23 S 1.75835 * 109.08093 * 0.25671 * 6 5 4 24 24 C 1.33818 * 122.45124 * 84.99866 * 4 3 2 25 25 C 1.50700 * 124.51852 * 359.94842 * 24 4 3 26 26 H 1.09003 * 109.46263 * 299.99646 * 1 2 3 27 27 H 1.08998 * 109.46893 * 59.99537 * 1 2 3 28 28 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46862 * 239.99909 * 2 1 3 30 30 H 1.09000 * 109.47409 * 120.00544 * 2 1 3 31 31 H 1.09009 * 109.46824 * 60.00490 * 3 2 1 32 32 H 1.09000 * 109.47253 * 300.00639 * 3 2 1 33 33 H 1.08000 * 123.35052 * 0.03638 * 5 4 3 34 34 H 0.97003 * 120.00395 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46977 * 59.98882 * 10 9 7 36 36 H 1.09006 * 109.46552 * 299.99228 * 10 9 7 37 37 H 1.09003 * 113.27809 * 41.92931 * 11 10 9 38 38 H 1.09008 * 113.46447 * 332.93223 * 12 11 10 39 39 H 1.08996 * 113.51824 * 202.51032 * 12 11 10 40 40 H 0.96995 * 120.00365 * 354.90363 * 17 16 14 41 41 H 1.08997 * 113.47135 * 87.43718 * 22 13 12 42 42 H 1.09007 * 113.47198 * 217.88025 * 22 13 12 43 43 H 1.09005 * 109.47330 * 89.99716 * 25 24 4 44 44 H 1.09002 * 109.47597 * 209.99750 * 25 24 4 45 45 H 1.08999 * 109.47247 * 329.99963 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2853 1.5437 1.1547 6 6 5.6343 1.5252 0.9375 7 6 6.6641 1.6170 1.9765 8 8 6.3417 1.7200 3.1455 9 7 7.9681 1.5883 1.6372 10 6 8.9975 1.6794 2.6756 11 6 10.3823 1.6233 2.0275 12 6 11.5449 1.8319 3.0077 13 7 11.5226 0.3835 3.2615 14 6 11.8659 -0.4410 4.2995 15 1 12.1447 -0.0198 5.2542 16 6 11.8556 -1.8180 4.1248 17 7 11.8889 -2.6145 5.1721 18 14 11.7946 -2.5406 2.4033 19 1 10.3791 -2.7276 1.9949 20 1 12.4655 -1.6162 1.4543 21 1 12.4904 -3.8524 2.3921 22 6 10.9753 0.2098 1.9076 23 16 5.9367 1.3820 -0.7887 24 6 4.2646 1.3441 -1.1259 25 6 3.6745 1.2223 -2.5072 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.8430 1.6291 2.1363 34 1 8.2252 1.5066 0.7054 35 1 8.8876 0.8466 3.3702 36 1 8.8866 2.6199 3.2155 37 1 10.4552 2.2152 1.1151 38 1 11.2763 2.4296 3.8788 39 1 12.4619 2.1745 2.5283 40 1 11.9950 -2.2422 6.0614 41 1 11.7417 0.1246 1.1372 42 1 10.2214 -0.5747 1.8415 43 1 3.5313 2.2167 -2.9301 44 1 4.3515 0.6513 -3.1425 45 1 2.7137 0.7109 -2.4480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032174933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:02 Heat of formation + Delta-G solvation = 11.338371 kcal Electronic energy + Delta-G solvation = -24233.590355 eV Core-core repulsion = 20764.033213 eV Total energy + Delta-G solvation = -3469.557143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13894 -40.24282 -39.48894 -35.88456 -35.12363 -34.54002 -32.98124 -30.93200 -29.50491 -28.04691 -26.91298 -26.32497 -24.47729 -23.62142 -22.68819 -21.70012 -20.81388 -19.74466 -19.34551 -18.90120 -17.64869 -17.22196 -16.81864 -16.56422 -16.18104 -15.85873 -15.70372 -15.33506 -15.24232 -15.11761 -14.67430 -14.33700 -14.22472 -13.88938 -13.66001 -13.47978 -13.20026 -13.00221 -12.90949 -12.82334 -12.71132 -12.58424 -12.34550 -12.03947 -11.98998 -11.88409 -11.69874 -11.46746 -11.42623 -11.31421 -11.04049 -10.83765 -10.29983 -9.61755 -9.34742 -9.22993 -8.62813 -5.45656 -0.54359 0.44232 0.86912 1.29407 1.36732 1.49389 1.64314 1.97544 2.10379 2.54747 3.06089 3.16259 3.43137 3.71397 3.79733 3.82633 4.03587 4.10254 4.26627 4.29966 4.37908 4.43199 4.53639 4.64283 4.66571 4.69351 4.70872 4.74639 4.76807 4.83433 4.88125 4.91297 4.98428 5.02719 5.11025 5.18005 5.18908 5.23180 5.24540 5.41554 5.43167 5.49852 5.54736 5.95794 6.36377 6.70163 7.03323 7.34829 8.29158 8.89087 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002757 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.779709 B =10151.849821 C =10395.237264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.055 4.055 4 C -0.133 4.133 5 C -0.050 4.050 6 C -0.303 4.303 7 C 0.583 3.417 8 O -0.581 6.581 9 N -0.709 5.709 10 C 0.154 3.846 11 C -0.113 4.113 12 C 0.124 3.876 13 N -0.661 5.661 14 C -0.288 4.288 15 H 0.044 0.956 16 C -0.091 4.091 17 N -0.973 5.973 18 Si 1.103 2.897 19 H -0.284 1.284 20 H -0.242 1.242 21 H -0.304 1.304 22 C 0.096 3.904 23 S 0.241 5.759 24 C -0.184 4.184 25 C -0.089 4.089 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.412 0.588 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.244 0.756 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.925 12.389 -24.002 34.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.094 4.094 4 C -0.145 4.145 5 C -0.084 4.084 6 C -0.423 4.423 7 C 0.371 3.629 8 O -0.463 6.463 9 N -0.361 5.361 10 C 0.031 3.969 11 C -0.132 4.132 12 C -0.002 4.002 13 N -0.390 5.390 14 C -0.416 4.416 15 H 0.062 0.938 16 C -0.283 4.283 17 N -0.619 5.619 18 Si 0.928 3.072 19 H -0.211 1.211 20 H -0.166 1.166 21 H -0.232 1.232 22 C -0.029 4.029 23 S 0.510 5.490 24 C -0.304 4.304 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.249 0.751 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.780 10.880 -24.721 33.478 hybrid contribution -0.542 1.049 2.865 3.099 sum -20.322 11.928 -21.856 32.139 Atomic orbital electron populations 1.21768 0.94606 1.02022 1.02374 1.21503 0.96479 0.95840 1.01889 1.20362 0.87511 0.97732 1.03785 1.18754 0.98602 1.06528 0.90622 1.20753 0.91117 0.96182 1.00367 1.24331 0.97504 1.21726 0.98697 1.17396 0.82446 0.75673 0.87349 1.90809 1.82474 1.52294 1.20761 1.45725 1.04780 1.74179 1.11368 1.20840 0.85390 1.01176 0.89535 1.22959 0.92206 0.97558 1.00510 1.22610 0.96036 0.85296 0.96210 1.46338 1.75910 1.04464 1.12290 1.19956 1.42863 0.89357 0.89394 0.93761 1.27177 0.99855 0.92751 1.08488 1.71008 1.55122 1.37168 0.98574 0.83326 0.77116 0.75053 0.71692 1.21144 1.16551 1.23196 1.23062 0.95949 0.96451 0.87416 1.82668 1.03798 1.67154 0.95347 1.24508 0.98028 1.06219 1.01627 1.20596 1.01869 1.04271 0.87972 0.92803 0.91458 0.92586 0.91388 0.93567 0.91062 0.88972 0.84444 0.75142 0.94576 0.90913 0.84529 0.93759 0.91193 0.94672 0.90930 0.94353 0.88698 0.89868 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.50 5.85 30.59 0.18 -1.32 16 3 C -0.05 -0.69 4.82 29.85 0.14 -0.55 16 4 C -0.13 -2.34 5.04 -21.05 -0.11 -2.45 16 5 C -0.05 -1.20 9.78 21.72 0.21 -0.98 16 6 C -0.30 -7.77 6.45 24.08 0.16 -7.62 16 7 C 0.58 19.18 7.78 86.42 0.67 19.85 16 8 O -0.58 -24.53 16.84 -4.36 -0.07 -24.60 16 9 N -0.71 -20.17 5.55 -467.17 -2.59 -22.76 16 10 C 0.15 5.17 5.52 86.38 0.48 5.64 16 11 C -0.11 -3.32 4.17 -10.37 -0.04 -3.36 16 12 C 0.12 4.44 8.25 83.17 0.69 5.12 16 13 N -0.66 -31.85 3.46 -738.04 -2.56 -34.41 16 14 C -0.29 -17.29 11.03 84.03 0.93 -16.36 16 15 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 16 C -0.09 -5.67 5.50 84.86 0.47 -5.21 16 17 N -0.97 -65.62 13.70 21.65 0.30 -65.32 16 18 Si 1.10 54.27 25.50 68.60 1.75 56.02 16 19 H -0.28 -13.40 6.97 99.48 0.69 -12.71 16 20 H -0.24 -10.13 5.66 99.48 0.56 -9.57 16 21 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 22 C 0.10 3.63 5.13 83.26 0.43 4.06 16 23 S 0.24 3.99 22.10 -56.49 -1.25 2.74 16 24 C -0.18 -2.69 6.28 24.68 0.15 -2.53 16 25 C -0.09 -0.66 9.70 71.24 0.69 0.03 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.78 7.24 -2.38 -0.02 0.76 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.94 8.11 -2.38 -0.02 0.92 16 32 H 0.09 0.81 7.46 -2.39 -0.02 0.79 16 33 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.41 8.71 7.59 -92.71 -0.70 8.01 16 35 H 0.04 1.58 7.93 -2.39 -0.02 1.57 16 36 H 0.07 2.39 8.14 -2.38 -0.02 2.38 16 37 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.04 1.61 8.12 -2.38 -0.02 1.59 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.24 16.60 8.73 -92.71 -0.81 15.79 16 41 H 0.07 2.46 7.02 -2.39 -0.02 2.45 16 42 H 0.04 1.57 6.21 -2.38 -0.01 1.56 16 43 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 0.53 6.39 -2.39 -0.02 0.52 16 Total: -1.00 -82.35 376.29 1.42 -80.93 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.09 Total: 13.84 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.76 Total: -6.44 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -4.85 Total: -122.49 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.07 Total: -24.60 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 1.75 Total: 56.02 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.25 Total: 2.74 kcal Total: -82.35 1.42 -80.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032174933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.270 kcal (2) G-P(sol) polarization free energy of solvation -82.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds