Wall clock time and date at job start Tue Mar 31 2020 13:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46746 * 2 1 4 4 C 1.50696 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.33810 * 124.52554 * 90.00244 * 4 3 2 6 6 C 1.37473 * 115.10393 * 179.75027 * 5 4 3 7 7 C 1.36651 * 113.29549 * 0.48984 * 6 5 4 8 8 C 1.46579 * 125.45723 * 179.80376 * 7 6 5 9 9 O 1.21703 * 119.99972 * 353.59319 * 8 7 6 10 10 N 1.34772 * 119.99926 * 173.59251 * 8 7 6 11 11 C 1.46499 * 120.00005 * 5.54601 * 10 8 7 12 12 C 1.46501 * 120.00261 * 185.54556 * 10 8 7 13 13 H 1.08997 * 110.91458 * 9.72735 * 12 10 8 14 14 C 1.55152 * 111.00597 * 245.82531 * 12 10 8 15 15 C 1.54324 * 103.10414 * 277.51285 * 14 12 10 16 16 N 1.47027 * 107.26998 * 337.72048 * 15 14 12 17 17 C 1.36936 * 125.64431 * 178.90292 * 16 15 14 18 18 H 1.08005 * 119.99293 * 180.02562 * 17 16 15 19 19 C 1.38806 * 120.00360 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47120 * 60.00261 * 21 19 17 23 23 H 1.48497 * 109.46907 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47326 * 300.00420 * 21 19 17 25 25 C 1.47420 * 108.70253 * 358.93534 * 16 15 14 26 26 S 1.70624 * 124.52241 * 270.02272 * 4 3 2 27 27 H 1.09003 * 109.47243 * 299.99855 * 1 2 3 28 28 H 1.09001 * 109.47258 * 60.00667 * 1 2 3 29 29 H 1.09006 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47314 * 239.99736 * 2 1 3 31 31 H 1.08998 * 109.46673 * 119.99786 * 2 1 3 32 32 H 1.09003 * 109.47131 * 60.00076 * 3 2 1 33 33 H 1.09002 * 109.47197 * 299.99833 * 3 2 1 34 34 H 1.07999 * 122.44840 * 0.04107 * 5 4 3 35 35 H 1.08007 * 123.35389 * 180.29506 * 6 5 4 36 36 H 1.09001 * 109.47430 * 178.63563 * 11 10 8 37 37 H 1.09000 * 109.46916 * 298.63124 * 11 10 8 38 38 H 1.08996 * 109.47496 * 58.63536 * 11 10 8 39 39 H 1.09002 * 110.72394 * 159.05917 * 14 12 10 40 40 H 1.09006 * 110.72160 * 35.96295 * 14 12 10 41 41 H 1.09007 * 109.88041 * 97.13366 * 15 14 12 42 42 H 1.09000 * 109.88632 * 218.14516 * 15 14 12 43 43 H 0.97002 * 120.00136 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.36563 * 142.96874 * 25 16 15 45 45 H 1.08999 * 110.36860 * 265.29762 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3057 1.4425 -1.1015 6 6 5.6618 1.4480 -0.8759 7 6 5.9890 1.4419 0.4509 8 6 7.3518 1.4415 0.9906 9 8 8.3034 1.3293 0.2403 10 7 7.5510 1.5654 2.3178 11 6 6.4065 1.5783 3.2322 12 6 8.9120 1.6873 2.8460 13 1 9.6308 1.8324 2.0397 14 6 9.2861 0.4535 3.7091 15 6 8.6615 0.7839 5.0811 16 7 8.4923 2.2430 5.1437 17 6 7.9492 2.9392 6.1903 18 1 7.8682 4.0150 6.1391 19 6 7.5028 2.2624 7.3170 20 7 7.6020 0.9515 7.3796 21 14 6.7626 3.2124 8.7450 22 1 5.5665 3.9577 8.2768 23 1 6.3674 2.2649 9.8180 24 1 7.7660 4.1700 9.2757 25 6 9.0033 2.8322 3.8927 26 16 4.5133 1.4423 1.4068 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8837 1.4430 -2.0956 35 1 6.3956 1.4533 -1.6684 36 1 6.7627 1.6610 4.2590 37 1 5.7657 2.4290 3.0003 38 1 5.8395 0.6545 3.1177 39 1 10.3684 0.3545 3.7919 40 1 8.8479 -0.4544 3.2945 41 1 7.6923 0.2939 5.1748 42 1 9.3239 0.4506 5.8800 43 1 7.2903 0.4785 8.1671 44 1 8.3817 3.6743 3.5884 45 1 10.0386 3.1494 4.0180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033117744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:31 Heat of formation + Delta-G solvation = 23.925664 kcal Electronic energy + Delta-G solvation = -25367.803783 eV Core-core repulsion = 21898.792466 eV Total energy + Delta-G solvation = -3469.011317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.86018 -38.22788 -37.24342 -34.98599 -34.31103 -32.29854 -30.41526 -29.37855 -27.98037 -26.96004 -26.04847 -24.44105 -23.65948 -21.83850 -21.61420 -20.12836 -19.42806 -18.34428 -17.76185 -16.99363 -16.09478 -15.90211 -15.23695 -15.12449 -14.81300 -14.68956 -13.96951 -13.90717 -13.79596 -13.43054 -12.91933 -12.83570 -12.75417 -12.52506 -12.15305 -12.09948 -11.96040 -11.73924 -11.70307 -11.60758 -11.40367 -11.00957 -11.00027 -10.93327 -10.77998 -10.53699 -10.21694 -10.08398 -9.99060 -9.72127 -9.48285 -8.76603 -8.65298 -8.51176 -8.11121 -6.93059 -5.81511 -3.17034 0.62110 1.60347 2.06750 2.46068 3.29989 3.34814 3.40299 3.40843 3.42965 4.41441 4.51803 4.72038 4.79666 4.81944 5.12953 5.25615 5.31000 5.37404 5.39306 5.46093 5.47776 5.53657 5.57905 5.61324 5.62825 5.79756 5.84343 5.86462 5.87697 6.01466 6.05444 6.16086 6.21366 6.32814 6.43318 6.45851 6.51451 6.60070 6.70833 7.05043 7.47094 7.51027 7.71736 7.76341 8.13076 8.40504 9.10880 9.70022 10.34938 11.29050 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.003893 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.880155 B = 7191.189156 C = 8800.251706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.049 4.049 4 C -0.230 4.230 5 C -0.157 4.157 6 C -0.060 4.060 7 C -0.265 4.265 8 C 0.583 3.417 9 O -0.546 6.546 10 N -0.582 5.582 11 C 0.037 3.963 12 C 0.125 3.875 13 H 0.101 0.899 14 C -0.156 4.156 15 C 0.172 3.828 16 N -0.602 5.602 17 C -0.236 4.236 18 H 0.079 0.921 19 C -0.003 4.003 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.125 3.875 26 S 0.245 5.755 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.254 0.746 44 H 0.046 0.954 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 -1.078 -13.973 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.349 4.349 5 C -0.187 4.187 6 C -0.094 4.094 7 C -0.385 4.385 8 C 0.371 3.629 9 O -0.426 6.426 10 N -0.312 5.312 11 C -0.107 4.107 12 C 0.021 3.979 13 H 0.119 0.881 14 C -0.196 4.196 15 C 0.048 3.952 16 N -0.330 5.330 17 C -0.364 4.364 18 H 0.096 0.904 19 C -0.200 4.200 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.002 4.002 26 S 0.515 5.485 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.173 0.827 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.248 -1.187 -12.561 16.255 hybrid contribution -0.198 0.433 -0.821 0.949 sum -10.446 -0.754 -13.382 16.993 Atomic orbital electron populations 1.21783 0.95460 1.01856 1.01888 1.21559 0.95786 0.95756 1.02757 1.20189 0.87691 0.97793 1.03166 1.24922 1.01568 1.07543 1.00901 1.19827 0.92550 1.07101 0.99220 1.20626 0.96036 0.97689 0.95047 1.24627 0.97112 1.18735 0.98025 1.17080 0.86770 0.76855 0.82180 1.90767 1.42102 1.51612 1.58161 1.47546 1.08078 1.70528 1.05051 1.22547 0.87782 0.99883 1.00528 1.22378 0.82135 0.97324 0.96094 0.88115 1.23276 1.00815 0.96968 0.98492 1.21257 0.98999 0.84203 0.90788 1.44646 1.71280 1.02379 1.14670 1.19004 1.32967 0.90825 0.93570 0.90353 1.24794 1.01253 0.95775 0.98181 1.69953 1.51740 1.05616 1.29293 0.86216 0.79024 0.78592 0.82019 1.21060 1.21582 1.21171 1.21991 0.97557 0.94112 0.86545 1.84071 0.93047 1.66627 1.04767 0.92540 0.92713 0.92531 0.91649 0.91589 0.90752 0.90366 0.84819 0.83493 0.82675 0.92330 0.92602 0.91236 0.91835 0.93147 0.93674 0.93530 0.93577 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 3 C -0.05 -0.44 5.64 -27.89 -0.16 -0.59 16 4 C -0.23 -2.62 5.53 -35.86 -0.20 -2.82 16 5 C -0.16 -1.82 9.99 -41.41 -0.41 -2.23 16 6 C -0.06 -0.83 10.02 -40.43 -0.41 -1.23 16 7 C -0.26 -4.10 6.33 -36.79 -0.23 -4.33 16 8 C 0.58 10.61 7.63 -12.90 -0.10 10.51 16 9 O -0.55 -11.18 16.28 5.19 0.08 -11.10 16 10 N -0.58 -10.53 2.91 -172.76 -0.50 -11.03 16 11 C 0.04 0.65 7.74 59.85 0.46 1.12 16 12 C 0.12 2.31 3.64 -65.52 -0.24 2.07 16 13 H 0.10 1.84 7.11 -51.93 -0.37 1.47 16 14 C -0.16 -2.94 6.54 -24.90 -0.16 -3.10 16 15 C 0.17 3.89 4.31 -3.06 -0.01 3.88 16 16 N -0.60 -14.10 1.92 -169.76 -0.33 -14.42 16 17 C -0.24 -6.06 9.94 -15.06 -0.15 -6.21 16 18 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 19 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 20 N -0.92 -25.14 10.31 55.49 0.57 -24.56 16 21 Si 0.91 20.90 29.55 -169.99 -5.02 15.87 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.12 2.49 6.42 -2.27 -0.01 2.48 16 26 S 0.24 3.19 17.53 -107.50 -1.88 1.31 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.16 3.27 3.46 -51.93 -0.18 3.09 16 37 H 0.06 0.96 6.32 -41.18 -0.26 0.70 16 38 H 0.06 0.91 6.55 -45.94 -0.30 0.61 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.23 6.37 -51.92 -0.33 0.90 16 42 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -28.75 364.01 -9.98 -38.73 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.87 Total: 2.18 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.51 Total: -2.45 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.26 Total: -50.02 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.88 Total: 1.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.75 -9.98 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033117744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.653 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds