Wall clock time and date at job start Tue Mar 31 2020 13:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46746 * 2 1 4 4 C 1.50696 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.33810 * 124.52554 * 90.00244 * 4 3 2 6 6 C 1.37473 * 115.10393 * 179.75027 * 5 4 3 7 7 C 1.36651 * 113.29549 * 0.48984 * 6 5 4 8 8 C 1.46579 * 125.45723 * 179.80376 * 7 6 5 9 9 O 1.21703 * 119.99972 * 353.59319 * 8 7 6 10 10 N 1.34772 * 119.99926 * 173.59251 * 8 7 6 11 11 C 1.46499 * 120.00005 * 5.54601 * 10 8 7 12 12 C 1.46501 * 120.00261 * 185.54556 * 10 8 7 13 13 H 1.08997 * 110.91458 * 9.72735 * 12 10 8 14 14 C 1.55152 * 111.00597 * 245.82531 * 12 10 8 15 15 C 1.54324 * 103.10414 * 277.51285 * 14 12 10 16 16 N 1.47027 * 107.26998 * 337.72048 * 15 14 12 17 17 C 1.36936 * 125.64431 * 178.90292 * 16 15 14 18 18 H 1.08005 * 119.99293 * 180.02562 * 17 16 15 19 19 C 1.38806 * 120.00360 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47120 * 60.00261 * 21 19 17 23 23 H 1.48497 * 109.46907 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47326 * 300.00420 * 21 19 17 25 25 C 1.47420 * 108.70253 * 358.93534 * 16 15 14 26 26 S 1.70624 * 124.52241 * 270.02272 * 4 3 2 27 27 H 1.09003 * 109.47243 * 299.99855 * 1 2 3 28 28 H 1.09001 * 109.47258 * 60.00667 * 1 2 3 29 29 H 1.09006 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47314 * 239.99736 * 2 1 3 31 31 H 1.08998 * 109.46673 * 119.99786 * 2 1 3 32 32 H 1.09003 * 109.47131 * 60.00076 * 3 2 1 33 33 H 1.09002 * 109.47197 * 299.99833 * 3 2 1 34 34 H 1.07999 * 122.44840 * 0.04107 * 5 4 3 35 35 H 1.08007 * 123.35389 * 180.29506 * 6 5 4 36 36 H 1.09001 * 109.47430 * 178.63563 * 11 10 8 37 37 H 1.09000 * 109.46916 * 298.63124 * 11 10 8 38 38 H 1.08996 * 109.47496 * 58.63536 * 11 10 8 39 39 H 1.09002 * 110.72394 * 159.05917 * 14 12 10 40 40 H 1.09006 * 110.72160 * 35.96295 * 14 12 10 41 41 H 1.09007 * 109.88041 * 97.13366 * 15 14 12 42 42 H 1.09000 * 109.88632 * 218.14516 * 15 14 12 43 43 H 0.97002 * 120.00136 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.36563 * 142.96874 * 25 16 15 45 45 H 1.08999 * 110.36860 * 265.29762 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3057 1.4425 -1.1015 6 6 5.6618 1.4480 -0.8759 7 6 5.9890 1.4419 0.4509 8 6 7.3518 1.4415 0.9906 9 8 8.3034 1.3293 0.2403 10 7 7.5510 1.5654 2.3178 11 6 6.4065 1.5783 3.2322 12 6 8.9120 1.6873 2.8460 13 1 9.6308 1.8324 2.0397 14 6 9.2861 0.4535 3.7091 15 6 8.6615 0.7839 5.0811 16 7 8.4923 2.2430 5.1437 17 6 7.9492 2.9392 6.1903 18 1 7.8682 4.0150 6.1391 19 6 7.5028 2.2624 7.3170 20 7 7.6020 0.9515 7.3796 21 14 6.7626 3.2124 8.7450 22 1 5.5665 3.9577 8.2768 23 1 6.3674 2.2649 9.8180 24 1 7.7660 4.1700 9.2757 25 6 9.0033 2.8322 3.8927 26 16 4.5133 1.4423 1.4068 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8837 1.4430 -2.0956 35 1 6.3956 1.4533 -1.6684 36 1 6.7627 1.6610 4.2590 37 1 5.7657 2.4290 3.0003 38 1 5.8395 0.6545 3.1177 39 1 10.3684 0.3545 3.7919 40 1 8.8479 -0.4544 3.2945 41 1 7.6923 0.2939 5.1748 42 1 9.3239 0.4506 5.8800 43 1 7.2903 0.4785 8.1671 44 1 8.3817 3.6743 3.5884 45 1 10.0386 3.1494 4.0180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033117744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:31 Heat of formation + Delta-G solvation = 10.390367 kcal Electronic energy + Delta-G solvation = -25368.390717 eV Core-core repulsion = 21898.792466 eV Total energy + Delta-G solvation = -3469.598251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30986 -39.45242 -38.59573 -35.92255 -35.74395 -34.09085 -31.58500 -30.92886 -29.55615 -28.08080 -27.50337 -26.13990 -24.68590 -23.08452 -22.32075 -21.95211 -20.83261 -19.47054 -19.09130 -18.85407 -17.51315 -16.95272 -16.62874 -16.61926 -16.14232 -15.77317 -15.60687 -15.31089 -14.69249 -14.49312 -14.32757 -14.07938 -13.90584 -13.77402 -13.68033 -13.45532 -13.29320 -13.18009 -12.83318 -12.75223 -12.67824 -12.37498 -12.32888 -12.08459 -12.05220 -12.04140 -11.82856 -11.61604 -11.54692 -11.28612 -10.94079 -10.68669 -9.94573 -9.55482 -9.36578 -8.84247 -7.81399 -5.17780 -0.45554 0.54371 1.05994 1.39658 1.51773 1.53099 1.59319 1.91685 2.14786 2.52349 3.38287 3.49473 3.65150 3.74603 3.86010 3.99007 4.07944 4.17819 4.19989 4.29711 4.33887 4.45978 4.46364 4.57953 4.63702 4.69500 4.74905 4.85198 4.85845 4.92913 4.97311 5.01734 5.06162 5.16162 5.19561 5.23797 5.31193 5.44591 5.49581 5.50665 5.55767 5.66199 5.78103 6.19334 6.33470 6.99923 7.12134 7.76814 8.41314 9.27774 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.003893 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.880155 B = 7191.189156 C = 8800.251706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.050 4.050 4 C -0.210 4.210 5 C -0.161 4.161 6 C -0.050 4.050 7 C -0.304 4.304 8 C 0.583 3.417 9 O -0.576 6.576 10 N -0.586 5.586 11 C 0.048 3.952 12 C 0.133 3.867 13 H 0.109 0.891 14 C -0.143 4.143 15 C 0.186 3.814 16 N -0.614 5.614 17 C -0.241 4.241 18 H 0.082 0.918 19 C -0.053 4.053 20 N -0.945 5.945 21 Si 0.971 3.029 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.283 1.283 25 C 0.126 3.874 26 S 0.240 5.760 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.010 0.990 43 H 0.247 0.753 44 H 0.047 0.953 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 -0.369 -15.615 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.089 4.089 4 C -0.330 4.330 5 C -0.190 4.190 6 C -0.085 4.085 7 C -0.424 4.424 8 C 0.373 3.627 9 O -0.459 6.459 10 N -0.315 5.315 11 C -0.097 4.097 12 C 0.029 3.971 13 H 0.127 0.873 14 C -0.182 4.182 15 C 0.062 3.938 16 N -0.341 5.341 17 C -0.370 4.370 18 H 0.100 0.900 19 C -0.247 4.247 20 N -0.593 5.593 21 Si 0.800 3.200 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.210 1.210 25 C 0.001 3.999 26 S 0.510 5.490 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.180 0.820 35 H 0.168 0.832 36 H 0.142 0.858 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.028 0.972 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.022 -0.456 -14.214 18.621 hybrid contribution 0.272 0.225 -0.410 0.541 sum -11.750 -0.231 -14.624 18.760 Atomic orbital electron populations 1.21766 0.94260 1.02296 1.02453 1.21545 0.96817 0.95086 1.02298 1.20340 0.85638 0.98521 1.04443 1.25230 1.02800 1.05238 0.99717 1.20052 0.91516 1.06830 1.00641 1.20871 0.97241 0.95913 0.94427 1.24456 0.96587 1.22229 0.99122 1.17398 0.87704 0.75902 0.81693 1.90734 1.43384 1.53147 1.58619 1.47575 1.07868 1.70726 1.05368 1.22353 0.87793 1.01011 0.98498 1.22262 0.82894 0.96235 0.95741 0.87313 1.23150 1.01569 0.97375 0.96114 1.20952 0.97185 0.83874 0.91816 1.44770 1.71237 1.02748 1.15303 1.19309 1.32324 0.91222 0.94120 0.89997 1.25488 1.02233 0.96526 1.00436 1.70147 1.52907 1.06848 1.29416 0.85265 0.78467 0.77220 0.79020 1.20055 1.22344 1.20974 1.22068 0.97769 0.94543 0.85566 1.83977 0.92462 1.66884 1.05656 0.92434 0.91703 0.92225 0.91556 0.92686 0.90202 0.88368 0.81960 0.83241 0.85848 0.91209 0.91650 0.89571 0.91251 0.95509 0.97168 0.94327 0.93457 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 3 C -0.05 -0.73 5.64 29.85 0.17 -0.56 16 4 C -0.21 -4.23 5.53 24.68 0.14 -4.09 16 5 C -0.16 -3.27 9.99 21.08 0.21 -3.06 16 6 C -0.05 -1.29 10.02 21.72 0.22 -1.07 16 7 C -0.30 -9.15 6.33 24.08 0.15 -9.00 16 8 C 0.58 21.03 7.63 86.42 0.66 21.69 16 9 O -0.58 -23.47 16.28 -4.36 -0.07 -23.54 16 10 N -0.59 -21.10 2.91 -818.72 -2.38 -23.49 16 11 C 0.05 1.69 7.74 127.77 0.99 2.68 16 12 C 0.13 4.87 3.64 46.55 0.17 5.04 16 13 H 0.11 3.87 7.11 -2.39 -0.02 3.86 16 14 C -0.14 -5.36 6.54 31.78 0.21 -5.15 16 15 C 0.19 8.69 4.31 86.73 0.37 9.06 16 16 N -0.61 -29.11 1.92 -691.00 -1.33 -30.44 16 17 C -0.24 -12.51 9.94 84.03 0.83 -11.67 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.05 -2.81 5.49 84.86 0.47 -2.34 16 20 N -0.94 -53.15 10.31 21.65 0.22 -52.93 16 21 Si 0.97 43.29 29.55 68.60 2.03 45.32 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 C 0.13 5.02 6.42 87.03 0.56 5.58 16 26 S 0.24 5.96 17.53 -56.49 -0.99 4.97 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.12 5.31 3.46 -2.39 -0.01 5.30 16 37 H 0.07 2.27 6.32 -9.22 -0.06 2.21 16 38 H 0.07 2.15 6.55 -6.20 -0.04 2.11 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 41 H 0.03 1.37 6.37 -2.38 -0.02 1.35 16 42 H 0.01 0.54 7.50 -2.39 -0.02 0.52 16 43 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -62.28 364.01 4.42 -57.86 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.91 Total: 17.55 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.04 Total: 4.70 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -3.49 Total: -106.85 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -0.99 Total: 4.97 kcal Total: -62.28 4.42 -57.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033117744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.250 kcal (2) G-P(sol) polarization free energy of solvation -62.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds